RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053720

Ensembl transcript IDs: ENSMUST00000066317.5

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AGAAGTTCAGTAGATATGATACTTCATGACATCACTAGAGCAACCAGTGAGAGTGAAATCCCACCACGGTaGGGTAGGAAAGTAAGTGAT +
Preference number: 4 (lower is better)
Translates to: RSSVDMILHDITRATSESEIPPR*GRKVSD
Trigger: ATCACTTACTTTCCTACCCCACCGTGGTGGGATTTC...ACTCTCACTGGTTGCTCTAGTGATGTCATGAAGTATCATATCTACTGAACTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp CATGACATCACTAGAGCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTCTTTGCTTCTGAGATaGAACCAAGTCTGTACAAAA +
Preference number: 4 (lower is better)
Translates to: HDITRATSESDSKTGHIHSLLLR*NQVCTK
Trigger: TTTTGTACAGACTTGGTTCCATCTCAGAAGCAAAGA...GTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGATGTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp GAGAGTGATTCTAAAACTGGACACATTCACTATAACCCAATATTTGGTGGATATTCTCAATCTTCTCCCTaGGTCTGTGACTTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: ESDSKTGHIHYNPIFGGYSQSSP*VCDFEG
Trigger: GCCTTCAAAGTCACAGACCCAGGGAGAAGATTGAGA...ATATCCACCAAATATTGGGTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp GAGAGTGATTCTAAAACTGGACACATTCACTATAACCCAATATTTGGTGGATATTCTTTCTACTTCCTGTaGCCACCTCAAGCATGTCTA +
Preference number: 4 (lower is better)
Translates to: ESDSKTGHIHYNPIFGGYSFYFL*PPQACL
Trigger: TAGACATGCTTGAGGTGGCCACAGGAAGTAGAAAGA...ATATCCACCAAATATTGGGTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp GCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTATAACCCAATATTTACAATAGGTGTGTCATaGTGCTTCACAAAGACACAA +
Preference number: 4 (lower is better)
Translates to: ATSESDSKTGHIHYNPIFTIGVS*CFTKTQ
Trigger: TTGTGTCTTTGTGAAGCACCATGACACACCTATTGT...AAATATTGGGTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp GACATCACTAGAGCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTATCTCTCTTTGATGTTTTaGGTAGAATTTCTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: DITRATSESDSKTGHIHYLSLMF*VEFLSG
Trigger: ACCAGAAAGAAATTCTACCCAAAACATCAAAGAGAG...ATAGTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGATGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CCA 90 bp CAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTATAACCCAATATTTGACAGGATTAGTGAAGTaGATCTTTCTAAGAAAGGAG +
Preference number: 4 (lower is better)
Translates to: QPVRVILKLDTFTITQYLTGLVK*IFLRKE
Trigger: CTCCTTTCTTAGAAAGATCCACTTCACTAATCCTGT...CAAATATTGGGTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS TCA 90 bp TGCCAGGCAGGCCAAGTATCCAAGAACACAGTAGAATGCAGTAACTaGGCCCTTGTTGCACACAATGATGATGTGGCCATGCTGAGAGTG +
Preference number: 5 (lower is better)
Translates to: CQAGQVSKNTVECSN*ALVAHNDDVAMLRV
Trigger: CACTCTCAGCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGCATTCTACTGTGTTCTTGGATACTTGGCCTGCCTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS TCA 90 bp GCAGTAACTGAGCCCTTGTTGCACACAATGATGATGTGGCCATGCTaGGAGTGTTCATCAATATCAACAAAGGGAGGAGAAACTGCTAGC +
Preference number: 5 (lower is better)
Translates to: AVTEPLLHTMMMWPC*ECSSISTKGGETAS
Trigger: GCTAGCAGTTTCTCCTCCCTTTGTTGATATTGATGAACACTCTCAGCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS GCA 90 bp AGAAATTTCATTTTCAGGGCAGGGCCTGCAAACAAAACAGCAGGCTaGCATTCCCTCCTTCCACAATCTTCTGAATCCAGGACTACATTC +
Preference number: 5 (lower is better)
Translates to: RNFIFRAGPANKTAG*HSLLPQSSESRTTF
Trigger: GAATGTAGTCCTGGATTCAGAAGATTGTGGAAGGAGGGAATGGCAGCCTGCTGTTTTGTTTGCAGGCCCTGCCCTGAAAATGAAATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS GCA 90 bp GTCTACTGCCTGATTATCAACCTGCTGCAAATTCATCTCATGGAGTaGATGGGCTACGACATACACAGCATTGTATATGTTATGACTACT +
Preference number: 5 (lower is better)
Translates to: VYCLIINLLQIHLME*MGYDIHSIVYVMTT
Trigger: AGTAGTCATAACATATACAATGCTGTGTATGTCGTAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAATCAGGCAGTAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS TCA 90 bp TCATGGAGTGCATGGGCTACGACATACACAGCATTGTATATGTTATaGCTACTCTCACTAAAGGCCATGTCAAATTTCTGTTCCATTAGC +
Preference number: 5 (lower is better)
Translates to: SWSAWATTYTALYML*LLSLKAMSNFCSIS
Trigger: GCTAATGGAACAGAAATTTGACATGGCCTTTAGTGAGAGTAGTCATAACATATACAATGCTGTGTATGTCGTAGCCCATGCACTCCATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS-3UTR CAA 90 bp CATGACATCACTAGAGCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTGTTTCATAATCACTTaGTCCCCAACAGGATTAGTG +
Preference number: 5 (lower is better)
Translates to: HDITRATSESDSKTGHIHCFIIT*SPTGLV
Trigger: CACTAATCCTGTTGGGGACAAAGTGATTATGAAACA...GTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGATGTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS TCA 90 bp TTCTGTTCTGTGTTGGCATATTGGTATTCTGGACAATTCACACATTaGTCCATATTTGTCTCATTAGAAATTTCATTTTCAGGGCAGGGC +
Preference number: 5 (lower is better)
Translates to: FCSVLAYWYSGQFTH*SIFVSLEISFSGQG
Trigger: GCCCTGCCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGTGTGAATTGTCCAGAATACCAATATGCCAACACAGAACAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS CCA 72 bp GAATCCAGGACTACATTCCGCACTGCACACAGAGGATaGCATCTTTCTACTTCCTGTGGCCACCTCAAGCAT +
Preference number: 6 (lower is better)
Translates to: ESRTTFRTAHRG*HLSTSCGHLKH
Trigger: ATGCTTGAGGTGGCCACAGGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCGGAATGTAGTCCTGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS GCA 72 bp CTGATTATCAACCTGCTGCAAATTCATCTCATGGAGTaGATGGGCTACGACATACACAGCATTGTATATGTT +
Preference number: 6 (lower is better)
Translates to: LIINLLQIHLME*MGYDIHSIVYV
Trigger: AACATATACAATGCTGTGTATGTCGTAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS TCA 72 bp GCATGGGCTACGACATACACAGCATTGTATATGTTATaGCTACTCTCACTAAAGGCCATGTCAAATTTCTGT +
Preference number: 6 (lower is better)
Translates to: AWATTYTALYML*LLSLKAMSNFC
Trigger: ACAGAAATTTGACATGGCCTTTAGTGAGAGTAGTCATAACATATACAATGCTGTGTATGTCGTAGCCCATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5
CDS CCA 72 bp TTCATAATCACTTTGTCCCCAACAGGATTAGTGAAGTaGATCTTTCTAAGAAAGGAGTTTACCTTCAAGCAG +
Preference number: 6 (lower is better)
Translates to: FIITLSPTGLVK*IFLRKEFTFKQ
Trigger: CTGCTTGAAGGTAAACTCCTTTCTTAGAAAGATCCACTTCACTAATCCTGTTGGGGACAAAGTGATTATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066317.5