Pregenerated sensors for VMN2R41 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090892Ensembl transcript IDs: ENSMUST00000168807.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCTGACTCTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATaGTATAACTACCTCCCCAACGCCCAGCCCTTCCTAATCCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: LLTLPHLTTPPPSPR*YNYLPNAQPFLIPG Trigger: CCCAGGGATTAGGAAGGGCTGGGCGTTGGGGAGGTAGTTATATCATCTTGGAGATGGCGGAGGAGTTGTTAGATGAGGAAGAGTCAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCTGGGGTTAGGTGTGTCTTCTCTGAGAGGAAATaGAGCAAGGGAATGAGTGCA | + |
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Preference number: 2 (lower is better) Translates to: AQPFLIPGDLSLSGVRCVFSERK*SKGMSA Trigger: TGCACTCATTCCCTTGCTTCATTTCCTCTCAGAGAA...GACACACCTAACCCCAGAGAGACTTAAGTCCCCAGGGATTAGGAAGGGCTGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCTGGGGTTAGGTGTGTCAATGAAGCAAGGGAATaGGTGCAAGATTTTATGGAC | + |
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Preference number: 2 (lower is better) Translates to: AQPFLIPGDLSLSGVRCVNEARE*VQDFMD Trigger: GTCCATAAAATCTTGCACTCATTCCCTTGCTTCATT...GACACACCTAACCCCAGAGAGACTTAAGTCCCCAGGGATTAGGAAGGGCTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR TCA 90 bp | GACTTAAGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCGAGTCCCTGGGCTTCTaGTCATTGTTGGATATAATA | + |
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Preference number: 2 (lower is better) Translates to: DLSLSGVRCVSPTDARPGESLGF*SLLDII Trigger: TATTATATCCAACAATGATCAGAAGCCCAGGGACTC...GCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAGAGAGACTTAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR TCA 90 bp | GACTTAAGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCCTTGTCCAGGTTTGTTaGGAATGCTGGTCTTTCTAT | + |
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Preference number: 2 (lower is better) Translates to: DLSLSGVRCVSPTDARPGLVQVC*ECWSFY Trigger: ATAGAAAGACCAGCATTCTCAACAAACCTGGACAAG...GCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAGAGAGACTTAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR GCA 90 bp | GTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTATGTCTGAGAGATCTTaGTTGTCCAGGTTTGTTGAG | + |
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Preference number: 2 (lower is better) Translates to: VRCVSPTDARPGSLMLHIMSERS*LSRFVE Trigger: CTCAACAAACCTGGACAAGCAAGATCTCTCAGACAT...AATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| 3UTR-3UTR TCA 90 bp | TCTTGCTTGTCCAGGTTTGTTGAGAATGCTGGTCTTTCTATGGGTCACCCTCCTAGAGGGCAATCTCCATaGAAGCAAAACGAAAAAGTA | + |
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Preference number: 2 (lower is better) Translates to: SCLSRFVENAGLSMGHPPRGQSP*KQNEKV Trigger: TACTTTTTCGTTTTGCTTTCATGGAGATTGCCCTCT...AGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS-3UTR CCA 90 bp | GTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTGCTGTAAGACACAAATaGCTCTGTTTGGAAGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: VRCVSPTDARPGSLMLHIAVRHK*LCLEGQ Trigger: TTGGCCTTCCAAACAGAGCCATTTGTGTCTTACAGC...AATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS-3UTR CCA 90 bp | GATCTCTGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTTGTCAAGCAGTGAGAACTaGCTCCTTTTCCATTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: DLWLEAQCLRDLACPGLLSSSEN*LLFHCL Trigger: TAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTGA...CAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS-3UTR CCA 90 bp | GTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTGCACACAAAACACATTaGAGTAGGGAACATATAGGA | + |
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Preference number: 4 (lower is better) Translates to: VRCVSPTDARPGSLMLHIAHKTH*SREHIG Trigger: TCCTATATGTTCCCTACTCCAATGTGTTTTGTGTGC...AATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS TCA 90 bp | TGCAAACAAAACAGCAGGCTGCCATTCCCTCCTTCCATAATCTTCTaGATCCAGGACTACATTCCGCACTGCACACAGAGGATGGCATCT | + |
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Preference number: 5 (lower is better) Translates to: CKQNSRLPFPPSIIF*IQDYIPHCTQRMAS Trigger: AGATGCCATCCTCTGTGTGCAGTGCGGAATGTAGTCCTGGATTCAGAAGATTATGGAAGGAGGGAATGGCAGCCTGCTGTTTTGTTTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS TCA 90 bp | TGCCATGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTaGGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: CHAGQISQDTVECSI*ALVAHNDDVAMESV Trigger: CACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATTCTACTGTATCCTGGGATATTTGGCCTGCATGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS TCA 90 bp | TCATGGAGGGCATGGGCTATGGCATGCACAGCATTGTATATGTTATaGCTATTCTCACTAAAGGTCATGTCAAACTTCTGTTCCATTAGC | + |
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Preference number: 5 (lower is better) Translates to: SWRAWAMACTALYML*LFSLKVMSNFCSIS Trigger: GCTAATGGAACAGAAGTTTGACATGACCTTTAGTGAGAATAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS TCA 90 bp | TTCTGTTCAGTGTTGGCATATTGGTATTCTGGACAATTCATGCATTaGTCCATATTTGTCTCATTAGAAATTTCATTTTCTGGGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: FCSVLAYWYSGQFMH*SIFVSLEISFSGQG Trigger: CCCCTGCCCAGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGCATGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS CAA 90 bp | CCTGATACCAGGAAGTTTCTCAATCTTCTTCCTGGGTCTGTGACTTaGAAAGCCAGAACCACAATGACTGTTTTGGCCAGAACTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: PDTRKFLNLLPGSVT*KARTTMTVLARTVE Trigger: TTCCACAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTTTCAAAGTCACAGACCCAGGAAGAAGATTGAGAAACTTCCTGGTATCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS GCA 72 bp | CAAGCAGTGAGAACTGGCTCCTTTTCCATTGTCTATTaGCTGATTATCAGCATGTTGCAGATTCATCTCATG | + |
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Preference number: 6 (lower is better) Translates to: QAVRTGSFSIVY*LIISMLQIHLM Trigger: CATGAGATGAATCTGCAACATGCTGATAATCAGGCAATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS TCA 72 bp | AATCTTTTTCAGTGGGTGTCTGAACTGCTGCCAGGATaGAAGCACAACTTAATCCCAAATATTCATCCATTA | + |
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Preference number: 6 (lower is better) Translates to: NLFQWVSELLPG*KHNLIPNIHPL Trigger: TAATGGATGAATATTTGGGATTAAGTTGTGCTTTCATCCTGGCAGCAGTTCAGACACCCACTGAAAAAGATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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| CDS CAA 90 bp | GGTGACACCTTTCTGAATACATTTGTTCTGTTCAGTGTTGGCATATaGGTATTCTGGACAATTCATGCATTGATCCATATTTGTCTCATT | + |
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Preference number: 6 (lower is better) Translates to: GDTFLNTFVLFSVGI*VFWTIHALIHICLI Trigger: AATGAGACAAATATGGATCAATGCATGAATTGTCCAGAATACCAATATGCCAACACTGAACAGAACAAATGTATTCAGAAAGGTGTCACC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168807.3 |
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