Pregenerated sensors for VMN2R40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090864Ensembl transcript IDs: ENSMUST00000171942.11
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGCATATTTGATGGGAGCTTCACATCAGCTAGTGTATGATCTCTaGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTG | + |
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Preference number: 1 (lower is better) Translates to: AAYLMGASHQLVYDL*LEAQCLRDLACPGL Trigger: CAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAGATCATACACTAGCTGATGTGAAGCTCCCATCAAATATGCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CCA 90 bp | AGAGATCTTGCTTGTCCAGGTTTGTTGAGAATGCTGGTCTTTCTATaGGTCACCCTCCTCAGCTTCTTACAACTATTCCCAATTCATCCA | + |
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Preference number: 1 (lower is better) Translates to: RDLACPGLLRMLVFL*VTLLSFLQLFPIHP Trigger: TGGATGAATTGGGAATAGTTGTAAGAAGCTGAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CAA 90 bp | CTCTGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTaGTTGAGAATGCTGGTCTTTCTATGGGTCACCCTCCTCAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LWLEAQCLRDLACPG*LRMLVFLWVTLLSF Trigger: GAAGCTGAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CAA 90 bp | TGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTaGAGAATGCTGGTCTTTCTATGGGTCACCCTCCTCAGCTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: WLEAQCLRDLACPGL*RMLVFLWVTLLSFL Trigger: TAAGAAGCTGAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR TCA 72 bp | CTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATaGTATAACTACCTCCCCAACGCCCAGCCCTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LPHLTTPPPSPR*YNYLPNAQPFL Trigger: TAGGAAGGGCTGGGCGTTGGGGAGGTAGTTATATCATCTTGGAGATGGCGGAGGAGTTGTTAGATGAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CCA 72 bp | GCTTGTCCAGGTTTGTTGAGAATGCTGGTCTTTCTATaGGTCACCCTCCTCAGCTTCTTACAACTATTCCCA | + |
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Preference number: 3 (lower is better) Translates to: ACPGLLRMLVFL*VTLLSFLQLFP Trigger: TGGGAATAGTTGTAAGAAGCTGAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CCA 72 bp | TTGATGGGAGCTTCACATCAGCTAGTGTATGATCTCTaGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: LMGASHQLVYDL*LEAQCLRDLAC Trigger: ACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAGATCATACACTAGCTGATGTGAAGCTCCCATCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR TCA 72 bp | GTGTTTAGTTCTCTGAGAGGAAATGAAGCAAGGGAATaGGTGCAAGATTTTATGGACACTGTACATAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: VFSSLRGNEARE*VQDFMDTVHKF Trigger: GAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCCTTGCTTCATTTCCTCTCAGAGAACTAAACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CCA 72 bp | GAGGAAATGAAGCAAGGGAATGAGTGCAAGATTTTATaGACACTGTACATAAGTTCAGTAGATATGATACTT | + |
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Preference number: 3 (lower is better) Translates to: EEMKQGNECKIL*TLYISSVDMIL Trigger: AAGTATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCCTTGCTTCATTTCCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | AACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCTGGGGTTAGGTGTAAAGTACCAGAGCTGTaGATGCAGAGAAACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: NAQPFLIPGDLSLSGVRCKVPEL*MQRNRR Trigger: CCTTCTGTTTCTCTGCATTCACAGCTCTGGTACTTT...ACACCTAACCCCAGAGAGACTTAAGTCCCCAGGGATTAGGAAGGGCTGGGCGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | AACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCTGGGGTTAGGTGTCCATTGTCTATTGCCTaGTTATCAGCATGTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NAQPFLIPGDLSLSGVRCPLSIA*LSACCR Trigger: TCTGCAACATGCTGATAATCAGGCAATAGACAATGG...ACACCTAACCCCAGAGAGACTTAAGTCCCCAGGGATTAGGAAGGGCTGGGCGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CAA 72 bp | GCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTaGAGAATGCTGGTCTTTCTATGGGTCACCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AQCLRDLACPGL*RMLVFLWVTLL Trigger: GAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CAA 72 bp | GAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTaGTTGAGAATGCTGGTCTTTCTATGGGTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: EAQCLRDLACPG*LRMLVFLWVTL Trigger: GAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | TTTGTTGAGAATGCTGGTCTTTCTATGGGTCACCCTCCTCAGCTTCTTACAACTGAACTGCTGCCAGGATaGAAGCACAACTTAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: FVENAGLSMGHPPQLLTTELLPG*KHNLIP Trigger: TGGGATTAAGTTGTGCTTTCATCCTGGCAGCAGTTC...AGTTGTAAGAAGCTGAGGAGGGTGACCCATAGAAAGACCAGCATTCTCAACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | TTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTTCTTCCAATTGGGTCCTaGAATCAGAAAGGAGCACAT | + |
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Preference number: 4 (lower is better) Translates to: LGVSLPLMLDQAVLCCIFLPIGS*NQKGAH Trigger: ATGTGCTCCTTTCTGATTTCAGGACCCAATTGGAAG...AAATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| 3UTR CAA 72 bp | TCTCTGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTaGTCCAGGTTTGTTGAGAATGCTGGTCTTTCTATG | + |
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Preference number: 4 (lower is better) Translates to: SLVRGSMSERSC*SRFVENAGLSM Trigger: CATAGAAAGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | TTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTTGAGAGATTCCCAAAGTaGATAATGTCATATTCATCC | + |
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Preference number: 4 (lower is better) Translates to: LGVSLPLMLDQAVLCCIFERFPK*IMSYSS Trigger: GGATGAATATGACATTATTCACTTTGGGAATCTCTC...AAATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | TTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTTCATAGCTTAGAAAGGTaGCACCTTTCTGAATACATT | + |
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Preference number: 4 (lower is better) Translates to: LGVSLPLMLDQAVLCCIFHSLER*HLSEYI Trigger: AATGTATTCAGAAAGGTGTCACCTTTCTAAGCTATG...AAATATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR GCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATAGGGTGTCTGAACTGCTaGCAGGATGAAAGCACAACT | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIGCLNC*QDESTT Trigger: AGTTGTGCTTTCATCCTGGCAGCAGTTCAGACACCC...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR GCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATAAGTGGGTGTCTGAACTaGTGCCAGGATGAAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMISGCLN*CQDEST Trigger: TGTGCTTTCATCCTGGCAGCAGTTCAGACACCCACT...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATAAAGCCAGAACCACAATaGCTGTTTTGGCCAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIKPEPQ*LFWPEL Trigger: CAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTT...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | ATGAAGCAAGGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAAGAAATTGGTTTCCTTaGTCATCATCTGGGATGACA | + |
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Preference number: 4 (lower is better) Translates to: MKQGNECKILWTLYISSVRNWFP*SSSGMT Trigger: TGTCATCCCAGATGATGATCAAGGAAACCAATTTCT...TACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCCTTGCTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATATTTACCTTTAAGCAGTaGGAACTGGCTCCTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIFTFKQ*ELAPFP Trigger: TGGAAAAGGAGCCAGTTCTCACTGCTTAAAGGTAAA...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATAATGTCTACATATAAGTaGGAGTGTCGACCATGTGGT | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIMSTYK*ECRPCG Trigger: ACCACATGGTCGACACTCTCACTTATATGTAGACAT...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR CCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATATTAAGCAGTGAGAACTaGCTCCTTTTCCATTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMILSSEN*LLFHCL Trigger: TAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTAA...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR TCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATAAAGGTGACACCTTTCTaGATACATTTGTTCTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIKVTPF*IHLFCS Trigger: TGAACAGAACAAATGTATTCAGAAAGGTGTCACCTT...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR GCA 90 bp | GGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTAGATATGATATTTTCCATTGTCTATTaGCTGATTATCAGCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: GNECKILWTLYISSVDMIFSIVY*LIISML Trigger: CAACATGCTGATAATCAGGCAATAGACAATGGAAAA...TATCATATCTACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR CAA 90 bp | AACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCTGGGGTTAGGTGTAAGAAATTGGTTTCCTaGATCATCATCTGGGATGAC | + |
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Preference number: 5 (lower is better) Translates to: NAQPFLIPGDLSLSGVRCKKLVS*IIIWDD Trigger: GTCATCCCAGATGATGATCAAGGAAACCAATTTCTT...ACACCTAACCCCAGAGAGACTTAAGTCCCCAGGGATTAGGAAGGGCTGGGCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS CCA 90 bp | AGTAGGCCCTTCTTAGAAAGGAGTTTACCTTTAAGCAGTGAGAACTaGCTCCTTTTCCATTGTCTATTGCCTGATTATCAGCATGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: SRPFLERSLPLSSEN*LLFHCLLPDYQHVA Trigger: TGCAACATGCTGATAATCAGGCAATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTAAAGGTAAACTCCTTTCTAAGAAGGGCCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR CAA 90 bp | ATGAAGCAAGGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTACTGGGACCAATGAAATaGGCCATGAGAAGTGTAATA | + |
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Preference number: 5 (lower is better) Translates to: MKQGNECKILWTLYISSVLGPMK*AMRSVI Trigger: TATTACACTTCTCATGGCCAATTTCATTGGTCCCAG...TACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCCTTGCTTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR CAA 90 bp | ATGAAGCAAGGGAATGAGTGCAAGATTTTATGGACACTGTACATAAGTTCAGTACTGATTATCAGCATGTaGCAGATTCATCTCATGGAG | + |
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Preference number: 5 (lower is better) Translates to: MKQGNECKILWTLYISSVLIISM*QIHLME Trigger: CTCCATGAGATGAATCTGCAACATGCTGATAATCAG...TACTGAACTTATGTACAGTGTCCATAAAATCTTGCACTCATTCCCTTGCTTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS-3UTR CAA 90 bp | TACATAAGTTCAGTAGATATGATACTTCCTGATATCACTAGTGCAACCAGTGAGAAAGATACCTTCCAATaGGGTCCTGAAATCAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: YISSVDMILPDITSATSEKDTFQ*GPEIRK Trigger: CTTTCTGATTTCAGGACCCAATTGGAAGGTATCTTT...CTCACTGGTTGCACTAGTGATATCAGGAAGTATCATATCTACTGAACTTATGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS CAA 72 bp | TCCTTTTCCATTGTCTATTGCCTGATTATCAGCATGTaGCAGATTCATCTCATGGAGGGCATGGGCTATGGC | + |
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Preference number: 6 (lower is better) Translates to: SFSIVYCLIISM*QIHLMEGMGYG Trigger: GCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACATGCTGATAATCAGGCAATAGACAATGGAAAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS CAA 72 bp | TCTGTGACTTTGAAAGCCAGAACCACAATGACTGTTTaGGCCAGAACTGTGGAAACAGCCACAGTGAATACA | + |
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Preference number: 6 (lower is better) Translates to: SVTLKARTTMTV*ARTVETATVNT Trigger: TGTATTCACTGTGGCTGTTTCCACAGTTCTGGCCAAAACAGTCATTGTGGTTCTGGCTTTCAAAGTCACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS CCA 72 bp | CATGTTGCAGATTCATCTCATGGAGGGCATGGGCTATaGCATGCACAGCATTGTATATGTTATGACTATTCT | + |
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Preference number: 6 (lower is better) Translates to: HVADSSHGGHGL*HAQHCICYDYS Trigger: AGAATAGTCATAACATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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| CDS CCA 72 bp | TTCTTAGAAAGGAGTTTACCTTTAAGCAGTGAGAACTaGCTCCTTTTCCATTGTCTATTGCCTGATTATCAG | + |
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Preference number: 6 (lower is better) Translates to: FLERSLPLSSEN*LLFHCLLPDYQ Trigger: CTGATAATCAGGCAATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTAAAGGTAAACTCCTTTCTAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171942.11 |
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