Pregenerated sensors for VMN2R39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096658Ensembl transcript IDs: ENSMUST00000174388.4
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTTCACATCAGCTGTATGATCTCATTCACATAGTCTATGAACTCTaGTTAGATGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTG | + |
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Preference number: 1 (lower is better) Translates to: ASHQLYDLIHIVYEL*LDAQCLRDLACPGL Trigger: CAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGTTCATAGACTATGTGAATGAGATCATACAGCTGATGTGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR-3UTR TCA 90 bp | TTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTTTCACATCAGCTGTATaGTCTCATTCACATAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: FHRGPWLLSIVGYNIFVLFTSAV*SHSHSL Trigger: TAGACTATGTGAATGAGATCATACAGCTGATGTGAA...AAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGCCCCTGTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR TCA 72 bp | GCTTGTCCAGGTTTGTTGAGACTGCTGATGTTTCTATaGGTTGCCCTCCTACTCTGCTTCTTGCAACTATTC | + |
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Preference number: 3 (lower is better) Translates to: ACPGLLRLLMFL*VALLLCFLQLF Trigger: GAATAGTTGCAAGAAGCAGAGTAGGAGGGCAACTCATAGAAACATCAGCAGTCTCAACAAACCTGGACAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR GCA 72 bp | ATATATTTGTACTTGATGATATCCCTACATCCCCAATaGCCAGCACTTCCCAATCCCTGGGGACTTAATTCT | + |
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Preference number: 3 (lower is better) Translates to: IYLYLMISLHPQ*PALPNPWGLNS Trigger: AGAATTAAGTCCCCAGGGATTGGGAAGTGCTGGGCATTGGGGATGTAGGGATATCATCAAGTACAAATATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR CCA 72 bp | CAGCTGTATGATCTCATTCACATAGTCTATGAACTCTaGTTAGATGCTCAATGTCTGAGAGATCTTGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: QLYDLIHIVYEL*LDAQCLRDLAC Trigger: ACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGTTCATAGACTATGTGAATGAGATCATACAGCTG 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR TCA 72 bp | GAGTTTAATTCTGTGAGAGGAAATGAAGCAAGTGAATaGGTTCAAGATTTGTGGACTCTATATAGAAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: EFNSVRGNEASE*VQDLWTLYRSS Trigger: TGAACTTCTATATAGAGTCCACAAATCTTGAACTCATTCACTTGCTTCATTTCCTCTCACAGAATTAAACTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | TTAATTCTGTCTAGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGCTCTCCACAGCAACCATaGCCTTGCCCTTGGTGCTAT | + |
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Preference number: 4 (lower is better) Translates to: LILSRVRCVSPTDARPGSSPQQP*PCPWCY Trigger: ATAGCACCAAGGGCAAGGTCATGGTTGCTGTGGAGA...GCTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCTAGACAGAATTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CCA 90 bp | CTGCTTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCAGAAATCCCACCATGGTaGGGTAGGAAAGTAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LLLATIPNSSTGAPGFCPEIPPW*GRKVSD Trigger: ATCACTTACTTTCCTACCCCACCATGGTGGGATTTC...TGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | CTGCTTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCAGCAATAATATGTAGCTaGGGATTCTGTTATTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LLLATIPNSSTGAPGFCPAIICS*GFCYWP Trigger: AGGCCAATAACAGAATCCTCAGCTACATATTATTGC...TGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | GCTTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGCACACAGAACACATTaGAATAGGGAACATATGGGA | + |
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Preference number: 4 (lower is better) Translates to: ASCNYSQFFHRGPWLLSIAHRTH*NREHMG Trigger: TCCCATATGTTCCCTATTTCAATGTGTTCTGTGTGC...AATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CCA 90 bp | TTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGTGGAGTGCATGGGCTATaGCATACACAGCATTGTATA | + |
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Preference number: 4 (lower is better) Translates to: FLQLFPILPQGPLASVHCGVHGL*HTQHCI Trigger: TATACAATGCTGTGTATGCCATAGCCCATGCACTCC...ACAATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | TTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTTTTCAGGGCAGGGCCTaGAAACAAAACAGCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FHRGPWLLSIVGYNIFVLFQGRA*KQNSRL Trigger: CAGCCTGCTGTTTTGTTTGCAGGCCCTGCCCTGAAA...AAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGCCCCTGTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | TCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTAGAAATTGGTTTCCTTaGTCATCATCTGGGATGAGA | + |
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Preference number: 4 (lower is better) Translates to: SCNYSQFFHRGPWLLSIVRNWFP*SSSGMR Trigger: TCTCATCCCAGATGATGATCAAGGAAACCAATTTCT...AACAATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | TCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTATAAATCTTTGCTTCTaGGATGGAACCAAGTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: SCNYSQFFHRGPWLLSIVINLCF*DGTKSV Trigger: TACAGACTTGGTTCCATCTCAGAAGCAAAGATTTAT...AACAATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | ACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTGATGAAAGTACCACAGCTGTaGATGCAGAGAAACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: TGAPGFCPLLDIIYLYLMKVPQL*MQRNRR Trigger: CCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTT...CATCAAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGCCCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | GACCTGTATCTCATTTTTCTACACAAAGTGATGGATTCAACTGCCTTATCAACTCCAAGAAAGCCACAATaGAGCTTCCAAGTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DLYLIFLHKVMDSTALSTPRKPQ*SFQVPG Trigger: GCCTGGCACTTGGAAGCTTCATTGTGGCTTTCTTGG...AGTTGATAAGGCAGTTGAATCCATCACTTTGTGTAGAAAAATGAGATACAGGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | ATCACTAGAGCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTATAACAATGAAGCTTCCAAGTaGCAGGCAGGCCAAGTATCC | + |
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Preference number: 4 (lower is better) Translates to: ITRATSESDSKTGHIHYNNEASK*QAGQVS Trigger: GGATACTTGGCCTGCCTGGCACTTGGAAGCTTCATT...GTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR CAA 72 bp | ACTCTGGTTAGATGCTCAATGTCTGAGAGATCTTGCTaGTCCAGGTTTGTTGAGACTGCTGATGTTTCTATG | + |
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Preference number: 4 (lower is better) Translates to: TLVRCSMSERSC*SRFVETADVSM Trigger: CATAGAAACATCAGCAGTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR CAA 72 bp | GCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTaGTACTTGATGATATCCCTACATCCCCAATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: APGFCPLLDIIY*YLMISLHPQCP Trigger: TGGGCATTGGGGATGTAGGGATATCATCAAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CCA 90 bp | ATCACTAGAGCAACCAGTGAGAGTGATTCTAAAACTGGACACATTCACTATAACCCAGAAATCCCACCATaGTGGGGTAGGAAAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: ITRATSESDSKTGHIHYNPEIPP*WGRKVS Trigger: ACTTACTTTCCTACCCCACCATGGTGGGATTTCTGG...GTTATAGTGAATGTGTCCAGTTTTAGAATCACTCTCACTGGTTGCTCTAGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| 3UTR CAA 72 bp | GCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTaGTACTTGACAGCAGAAAAGGAACACTTCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: APGFCPLLDIIY*YLTAEKEHFLL Trigger: AAGGAGGAAGTGTTCCTTTTCTGCTGTCAAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | GACCTGTATCTCATTTTTCTACACAAAGTGATGGATTCAACTGCCTTATCAACTGATCATCATCTGGGATaGGAAGGCCAATCCAATTCC | + |
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Preference number: 4 (lower is better) Translates to: DLYLIFLHKVMDSTALSTDHHLG*EGQSNS Trigger: GGAATTGGATTGGCCTTCTCATCCCAGATGATGATC...AGTTGATAAGGCAGTTGAATCCATCACTTTGTGTAGAAAAATGAGATACAGGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | GTCTATGAACTCTGGTTAGATGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTAATCCCAAGGTGTTGTaGGAGATTCTCAAAATGAAA | + |
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Preference number: 4 (lower is better) Translates to: VYELWLDAQCLRDLACPGNPKVL*EILKMK Trigger: TTTCATTTTGAGAATCTCTCACAACACCTTGGGATT...ACCTGGACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGTTCATAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | TTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTGTGAAAAATATGGGCTaGACTTTCCTAACTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: FHRGPWLLSIVGYNIFVLVKNMG*TFLTSP Trigger: AGGTGAAGTTAGGAAAGTTCAGCCCATATTTTTCAC...AAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGCCCCTGTGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | GTCTATGAACTCTGGTTAGATGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTAAAGTTTCGACCATGTaGAAAATATGGGCTGAACTT | + |
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Preference number: 4 (lower is better) Translates to: VYELWLDAQCLRDLACPGKVSTM*KIWAEL Trigger: AAGTTCAGCCCATATTTTTCACATGGTCGAAACTTT...ACCTGGACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGTTCATAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | TATAGAAGTTCAGTAGATATGATACTTCATGACATCACTAGAGCAACCAGTGAGAACAAAACAGCAGGCTaGCATTCCCTCCTTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: YRSSVDMILHDITRATSENKTAG*HSLLPQ Trigger: TTGTGGAAGGAGGGAATGGCAGCCTGCTGTTTTGTT...CTCACTGGTTGCTCTAGTGATGTCATGAAGTATCATATCTACTGAACTTCTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR TCA 90 bp | TTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTGATCAGGATTCCTGTTaGTTTCATCCATTGAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: FHRGPWLLSIVGYNIFVLDQDSC*FHPLKR Trigger: TCTTTTCAATGGATGAAATCAACAGGAATCCTGATC...AAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGGGGCCCCTGTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | GACCTGTATCTCATTTTTCTACACAAAGTGATGGATTCAACTGCCTTATCAACTAGGTTTCTGAACTGCTaGCAGGATGAAAGCACAAGT | + |
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Preference number: 4 (lower is better) Translates to: DLYLIFLHKVMDSTALSTRFLNC*QDESTS Trigger: ACTTGTGCTTTCATCCTGGCAGCAGTTCAGAAACCT...AGTTGATAAGGCAGTTGAATCCATCACTTTGTGTAGAAAAATGAGATACAGGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | CCTGGCTTCTGTCCATTGTTGGATATAATATATTTGTACTTGATGATATCCCTATACCACAGCTGTGAATaGAGAGAAACAGAAGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PGFCPLLDIIYLYLMISLYHSCE*RETEGH Trigger: ATGGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTA...TAGGGATATCATCAAGTACAAATATATTATATCCAACAATGGACAGAAGCCAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR GCA 90 bp | GATTCTAAAACTGGACACATTCACTATAACCCAATATTTGGTGGATATGTACCAATAGGTGTGTCATGGTaGTTCACAAAGACACAAAGT | + |
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Preference number: 4 (lower is better) Translates to: DSKTGHIHYNPIFGGYVPIGVSW*FTKTQS Trigger: ACTTTGTGTCTTTGTGAAGCACCATGACACACCTAT...TGGTACATATCCACCAAATATTGGGTTATAGTGAATGTGTCCAGTTTTAGAATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | CTGCTTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCAGGTAGGGAAATTCCATaGCTTTGTGGTGATCCATAT | + |
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Preference number: 5 (lower is better) Translates to: LLLATIPNSSTGAPGFCPGREIP*LCGDPY Trigger: ATATGGATCACCACAAAGCAATGGAATTTCCCTACC...TGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | CTGCTTCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCAAAGAAATTGGTTTCCTaGATCATCATCTGGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: LLLATIPNSSTGAPGFCPKKLVS*IIIWDE Trigger: CTCATCCCAGATGATGATCAAGGAAACCAATTTCTT...TGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGAAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | TCTTGCAACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTCAATCAAATGAGGCATaGGATGAATTGCTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SCNYSQFFHRGPWLLSIVQSNEA*DELLFS Trigger: GCTGAAGAGCAATTCATCCAATGCCTCATTTGATTG...AACAATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CCA 90 bp | TACATTCCGCACTGCACACAGAGGATGGCATCTTTCTACTTCCTGTaGCCACCTCAAGCATGTCTACATATAAGTGAAAGTTTCGACCAT | + |
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Preference number: 5 (lower is better) Translates to: YIPHCTQRMASFYFL*PPQACLHISESFDH Trigger: ATGGTCGAAACTTTCACTTATATGTAGACATGCTTGAGGTGGCCACAGGAAGTAGAAAGATGCCATCCTCTGTGTGCAGTGCGGAATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | AACTATTCCCAATTCTTCCACAGGGGCCCCTGGCTTCTGTCCATTGTTGGATATGAGGCATTGGATGAATaGCTCTTCAGCATTTTACAG | + |
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Preference number: 5 (lower is better) Translates to: NYSQFFHRGPWLLSIVGYEALDE*LFSILQ Trigger: CTGTAAAATGCTGAAGAGCAATTCATCCAATGCCTC...ATATCCAACAATGGACAGAAGCCAGGGGCCCCTGTGGAAGAATTGGGAATAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS GCA 90 bp | GTCTACTGCCTGATTATCAACCTGCTGCAAATTCATCTCATGGAGTaGATGGGCTATGGCATACACAGCATTGTATATGTTATGACTACT | + |
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Preference number: 5 (lower is better) Translates to: VYCLIINLLQIHLME*MGYGIHSIVYVMTT Trigger: AGTAGTCATAACATATACAATGCTGTGTATGCCATAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAATCAGGCAGTAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | GACCTGTATCTCATTTTTCTACACAAAGTGATGGATTCAACTGCCTTATCAACTGTGTCAGGCAGATTCTaGGCCAAGAAAGCCACAATG | + |
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Preference number: 5 (lower is better) Translates to: DLYLIFLHKVMDSTALSTVSGRF*AKKATM Trigger: CATTGTGGCTTTCTTGGCCAAGAATCTGCCTGACAC...AGTTGATAAGGCAGTTGAATCCATCACTTTGTGTAGAAAAATGAGATACAGGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS TCA 90 bp | TCATGGAGTGCATGGGCTATGGCATACACAGCATTGTATATGTTATaGCTACTCTCACTAAAGGCCATGTCAAATTTCTGTTCCATTAGC | + |
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Preference number: 5 (lower is better) Translates to: SWSAWAMAYTALYML*LLSLKAMSNFCSIS Trigger: GCTAATGGAACAGAAATTTGACATGGCCTTTAGTGAGAGTAGTCATAACATATACAATGCTGTGTATGCCATAGCCCATGCACTCCATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | GTCTATGAACTCTGGTTAGATGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTACTCTCTTTGATGTTTaGGGTAGAATTTCTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: VYELWLDAQCLRDLACPGTLFDV*GRISFW Trigger: CCAGAAAGAAATTCTACCCAAAACATCAAAGAGAGT...ACCTGGACAAGCAAGATCTCTCAGACATTGAGCATCTAACCAGAGTTCATAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS-3UTR CAA 90 bp | TATAGAAGTTCAGTAGATATGATACTTCATGACATCACTAGAGCAACCAGTGAGTCTTTCATAATCAATTaGTCCCCAACAGGATTAGTG | + |
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Preference number: 5 (lower is better) Translates to: YRSSVDMILHDITRATSESFIIN*SPTGLV Trigger: CACTAATCCTGTTGGGGACAAATTGATTATGAAAGA...CTCACTGGTTGCTCTAGTGATGTCATGAAGTATCATATCTACTGAACTTCTATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS GCA 72 bp | CAAGCAGTGAGAACTGGCTCCTTTCCCATTGTCTACTaGCTGATTATCAACCTGCTGCAAATTCATCTCATG | + |
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Preference number: 6 (lower is better) Translates to: QAVRTGSFPIVY*LIINLLQIHLM Trigger: CATGAGATGAATTTGCAGCAGGTTGATAATCAGGCAGTAGACAATGGGAAAGGAGCCAGTTCTCACTGCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS TCA 72 bp | CATGGTGCTTCACAAAGACACAAAGTACCACAGCTGTaGATGCAGAGAAACAGAAGGCCATTAAGGCAAGTA | + |
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Preference number: 6 (lower is better) Translates to: HGASQRHKVPQL*MQRNRRPLRQV Trigger: TACTTGCCTTAATGGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTTGTGTCTTTGTGAAGCACCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CCA 72 bp | CCTGCTGCAAATTCATCTCATGGAGTGCATGGGCTATaGCATACACAGCATTGTATATGTTATGACTACTCT | + |
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Preference number: 6 (lower is better) Translates to: PAANSSHGVHGL*HTQHCICYDYS Trigger: AGAGTAGTCATAACATATACAATGCTGTGTATGCCATAGCCCATGCACTCCATGAGATGAATTTGCAGCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CAA 72 bp | TCCAGGAAGTTCCAGAAACTTAAAGATACCTCCCAATaGGGTCCTGTAAGCAGAAACGAACACATACTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SRKFQKLKDTSQ*GPVSRNEHILS Trigger: AGAGAGTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGAGGTATCTTTAAGTTTCTGGAACTTCCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CAA 90 bp | AAGAAGCTGTCCAGGAAGTTCCAGAAACTTAAAGATACCTCCCAATaGGGTCCTGTAAGCAGAAACGAACACATACTCTCTTCATTACAG | + |
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Preference number: 6 (lower is better) Translates to: KKLSRKFQKLKDTSQ*GPVSRNEHILSSLQ Trigger: CTGTAATGAAGAGAGTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGAGGTATCTTTAAGTTTCTGGAACTTCCTGGACAGCTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS GCA 72 bp | CTGATTATCAACCTGCTGCAAATTCATCTCATGGAGTaGATGGGCTATGGCATACACAGCATTGTATATGTT | + |
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Preference number: 6 (lower is better) Translates to: LIINLLQIHLME*MGYGIHSIVYV Trigger: AACATATACAATGCTGTGTATGCCATAGCCCATGCACTCCATGAGATGAATTTGCAGCAGGTTGATAATCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS GCA 72 bp | ATTCTGTTATTGGCCTTCACAATAGGTGTGTCATGGTaGTTCACAAAGACACAAAGTACCACAGCTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: ILLLAFTIGVSW*FTKTQSTTAVN Trigger: ATTCACAGCTGTGGTACTTTGTGTCTTTGTGAAGCACCATGACACACCTATTGTGAAGGCCAATAACAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS TCA 72 bp | GCATGGGCTATGGCATACACAGCATTGTATATGTTATaGCTACTCTCACTAAAGGCCATGTCAAATTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: AWAMAYTALYML*LLSLKAMSNFC Trigger: ACAGAAATTTGACATGGCCTTTAGTGAGAGTAGTCATAACATATACAATGCTGTGTATGCCATAGCCCATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CAA 90 bp | GTTCTGTTCTGTGTTGGCATATTGGTATTCTGGACAATTCACACATaGATCCATATTTGTCTCATTAGAAATTTCATTTTCAGGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: VLFCVGILVFWTIHT*IHICLIRNFIFRAG Trigger: CCCTGCCCTGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGTGTGAATTGTCCAGAATACCAATATGCCAACACAGAACAGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CCA 72 bp | TTCATAATCAATTTGTCCCCAACAGGATTAGTGAAGTaGATCTTTCTAAGAAAGGAGTTTACCTTCAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: FIINLSPTGLVK*IFLRKEFTFKQ Trigger: CTGCTTGAAGGTAAACTCCTTTCTTAGAAAGATCCACTTCACTAATCCTGTTGGGGACAAATTGATTATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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| CDS CAA 72 bp | TGTTCCATTAGCCAATCAAATGAGGCATTGGATGAATaGCTCTTCAGCATTTTACAGTTAGATGCTAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: CSISQSNEALDE*LFSILQLDAKD Trigger: ATCCTTAGCATCTAACTGTAAAATGCTGAAGAGCAATTCATCCAATGCCTCATTTGATTGGCTAATGGAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174388.4 |
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