Pregenerated sensors for VMN2R34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070841Ensembl transcript IDs: ENSMUST00000173459.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGCATATTTGTTGGGGGCTTCACATCAGCTAGTGTATGATCTCTaGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTG | + |
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Preference number: 1 (lower is better) Translates to: AAYLLGASHQLVYDL*LEAQCLRDLACPGL Trigger: CAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAGATCATACACTAGCTGATGTGAAGCCCCCAACAAATATGCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| 3UTR CAA 90 bp | CTCTGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTaGTTGAGAATGCTGGTCACCCTCCTCCTCAGCTTCTTCCCAATA | + |
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Preference number: 2 (lower is better) Translates to: LWLEAQCLRDLACPG*LRMLVTLLLSFFPI Trigger: TATTGGGAAGAAGCTGAGGAGGAGGGTGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| 3UTR CAA 90 bp | TGGTTAGAGGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTaGAGAATGCTGGTCACCCTCCTCCTCAGCTTCTTCCCAATATTC | + |
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Preference number: 2 (lower is better) Translates to: WLEAQCLRDLACPGL*RMLVTLLLSFFPIF Trigger: GAATATTGGGAAGAAGCTGAGGAGGAGGGTGACCAGCATTCTCAACAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCCTCTAACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| 3UTR-3UTR TCA 90 bp | CCAATCCCTGGAGACTTAAGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGAGTCCCTGGGCTTCTaGACATTGTTGGATATAATA | + |
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Preference number: 2 (lower is better) Translates to: PIPGDLSLSGVRCVSPTDESLGF*TLLDII Trigger: TATTATATCCAACAATGTTCAGAAGCCCAGGGACTC...ATCAGTGGGAGAGACACACCTAACCCCAGAGAGACTTAAGTCTCCAGGGATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCCTTCCCAATCCCTGTTCTACACAAAGTGGTaGATTCAACTTCCTTATCAA | + |
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Preference number: 2 (lower is better) Translates to: HLQDDIPTSPTTSPSQSLFYTKW*IQLPYQ Trigger: TTGATAAGGAAGTTGAATCCACCACTTTGTGTAGAA...CAGGGATTGGGAAGGGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | CATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCCTTCCCAATCCCTGGGGTGTCTGAACTGCTaGCAGGATGAAAGCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: HLQDDIPTSPTTSPSQSLGCLNC*QDESTR Trigger: TCTTGTGCTTTCATCCTGGCAGCAGTTCAGACACCC...CAGGGATTGGGAAGGGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | AACAACTCCTCCCCCATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCAATGGGTGTCTGAACTaGTGCCAGGATGAAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: NNSSPISKMISLPPQRPANGCLN*CQDEST Trigger: TGTGCTTTCATCCTGGCAGCAGTTCAGACACCCATT...GGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATGGGGGAGGAGTTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | CATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCCTTCCCAATCCCTGCAGCAACCATGTGTTTaGCCTTGGTGCTATGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: HLQDDIPTSPTTSPSQSLQQPCV*PWCYGR Trigger: TCTACCATAGCACCAAGGGCAAACACATGGTTGCTG...CAGGGATTGGGAAGGGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR TCA 90 bp | CATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCCTTCCCAATCCCTGTGTTTGGAAGGCCAATaGAGAGAAAGGAGCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: HLQDDIPTSPTTSPSQSLCLEGQ*RERSTE Trigger: TTCTGTGCTCCTTTCTCTTCATTGGCCTTCCAAACA...CAGGGATTGGGAAGGGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | CCAATCCCTGGAGACTTAAGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATAGAGAAGTTTCCAAGTaGCAGGCAGGCCAAGTATCC | + |
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Preference number: 4 (lower is better) Translates to: PIPGDLSLSGVRCVSPTDREVSK*QAGQVS Trigger: GGATACTTGGCCTGCCTGGCACTTGGAAACTTCTCT...ATCAGTGGGAGAGACACACCTAACCCCAGAGAGACTTAAGTCTCCAGGGATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR CCA 90 bp | CCCCATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCCTTCCCAATCCGAAATCACGCCATGGTaGGGTAGAAAAGTAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PHLQDDIPTSPTTSPSQSEITPW*GRKVSD Trigger: ATCACTTACTTTTCTACCCCACCATGGCGTGATTTC...GGATTGGGAAGGGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | AACAACTCCTCCCCCATCTCCAAGATGATATCCCTACCTCCCCAACGACCAGCCGTTGATTTCATCCATTaGAAACACCAATGCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: NNSSPISKMISLPPQRPAVDFIH*KHQCQS Trigger: GCTTTGGCATTGGTGTTTGCAATGGATGAAATCAAC...GGCTGGTCGTTGGGGAGGTAGGGATATCATCTTGGAGATGGGGGAGGAGTTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR CCA 90 bp | TCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCACAGATGGCTCTGTTTaGAAGGCCAATGAAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SLGLGVSLPLMLDQAVLCTDGSV*KANEEK Trigger: TTTCTCTTCATTGGCCTTCCAAACAGAGCCATCTGT...GCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR CCA 90 bp | CTCCTCAGCTTCTTCCCAATATTCCCAATTCATCCAGAGAGTCCCTGGGCTTCTTCCTTGGTCATCATCTaGAATGACAAGGCCAATCCA | + |
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Preference number: 4 (lower is better) Translates to: LLSFFPIFPIHPESPWASSLVII*NDKANP Trigger: TGGATTGGCCTTGTCATTCCAGATGATGACCAAGGA...AGAAGCCCAGGGACTCTCTGGATGAATTGGGAATATTGGGAAGAAGCTGAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR TCA 90 bp | AGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTGAGAGATTCACAAAGTaGACAATGTCATATTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SLSGVRCVSPTDARPGSLERFTK*TMSYSS Trigger: GGATGAATATGACATTGTTCACTTTGTGAATCTCTC...AAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAGAGAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | TCTCTGGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCATTCCAAATGTGATTTaGTGTAAGACACAGATGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLGLGVSLPLMLDQAVLCIPNVI*CKTQMA Trigger: AGCCATCTGTGTCTTACAGCAAATCACATTTGGAAT...GCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCCAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | GGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATACATTGCAAACACCAATaGCAAAGCATATTTGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: GLGVSLPLMLDQAVLCCIHCKHQ*QSIFVV Trigger: AACCACAAATATGCTTTGGCATTGGTGTTTGCAATG...TATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | CCAATCCCTGGAGACTTAAGTCTCTCTGGGGTTAGGTGTGTCTCTCCCACTGATAAGAAGCTGTTCATGTaGTTCCAGAAACCTAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: PIPGDLSLSGVRCVSPTDKKLFM*FQKPKD Trigger: ATCTTTAGGTTTCTGGAAGCACATGAACAGCTTCTT...ATCAGTGGGAGAGACACACCTAACCCCAGAGAGACTTAAGTCTCCAGGGATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS-3UTR GCA 90 bp | GGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATTTTCCATTGTCTATTaGCTGATTATCAGCCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: GLGVSLPLMLDQAVLCCIFSIVY*LIISLL Trigger: CAACAGGCTGATAATCAGGCAATAGACAATGGAAAA...TATGCAGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS CCA 90 bp | TACAATCAGCACTGCACACAGAGGATGGCATCTTTCTTCTTCCTGTaGCCAACTCAATCCTGTCTACATATAAGTGAGAGTGTCGACCAT | + |
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Preference number: 5 (lower is better) Translates to: YNQHCTQRMASFFFL*PTQSCLHISESVDH Trigger: ATGGTCGACACTCTCACTTATATGTAGACAGGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCTCTGTGTGCAGTGCTGATTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS CCA 90 bp | AATGCAGTAACTGAGCCCTTGTTGCACACAATGATGATGTGGCCATaGAGAGTGTGTTCATCAATATCAACAAAGGGAGGAGAAACTGCT | + |
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Preference number: 5 (lower is better) Translates to: NAVTEPLLHTMMMWP*RVCSSISTKGGETA Trigger: AGCAGTTTCTCCTCCCTTTGTTGATATTGATGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS TCA 72 bp | CTTCCTGTGGCCAACTCAATCCTGTCTACATATAAGTaGGAGTGTCGACCATGTGGTAAATATGGGCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: LPVANSILSTYK*ECRPCGKYGLN Trigger: GTTCAGCCCATATTTACCACATGGTCGACACTCTCACTTATATGTAGACAGGATTGAGTTGGCCACAGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS TCA 72 bp | CATGATGCTTCACAAAGACACAAAGTACCACAGCTGTaGATGCAGAGAAACAGAAGGCCATTAAGGCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: HDASQRHKVPQL*MQRNRRPLRQV Trigger: CACTTGCCTTAATGGCCTTCTGTTTCTCTGCATTCACAGCTGTGGTACTTTGTGTCTTTGTGAAGCATCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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| CDS TCA 72 bp | TCAAAGACATATTTGGTAAAAGATCAGGATTTCTGTTaGTTTCATCCATTGCAAACACCAATGCCAAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SKTYLVKDQDFC*FHPLQTPMPKH Trigger: ATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAAATATGTCTTTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173459.3 |
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