RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096630

Ensembl transcript IDs: ENSMUST00000032238.5, ENSMUST00000232707.2, ENSMUST00000233955.2

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATaGTCTTCACAAGACCAAGGGACTCTCCTCCCATTGATGGCTGAA +
Preference number: 1 (lower is better)
Translates to: PLLLPGPGIPLYWGI*SSQDQGTLLPLMAE
Trigger: TTCAGCCATCAATGGGAGGAGAGTCCCTTGGTCTTGTGAAGATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 90 bp CTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGCCCATaGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGA +
Preference number: 1 (lower is better)
Translates to: LELKQVREQELMQSP*RNVLYWLASPGLLR
Trigger: TCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 90 bp GGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGACTaGTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCA +
Preference number: 1 (lower is better)
Translates to: GGMFFTGLLPLACSD*SLIEPKTTSPEMVP
Trigger: TGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 90 bp GTGCATGTCAACATCAGGGAAAGGGGGATATGTTCCCAGCCAGACTaGACAGATGCACACTTGAATGATGGAACCACAGCAGACTATGGC +
Preference number: 1 (lower is better)
Translates to: VHVNIRERGICSQPD*TDAHLNDGTTADYG
Trigger: GCCATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAACATATCCCCCTTTCCCTGATGTTGACATGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 90 bp AAGGGTGGACCCCTCGTTACACCAGAGAATGATTTGACCAAACTCTaGGTGCATGTCAACATCAGGGAAAGGGGGATATGTTCCCAGCCA +
Preference number: 1 (lower is better)
Translates to: KGGPLVTPENDLTKL*VHVNIRERGICSQP
Trigger: TGGCTGGGAACATATCCCCCTTTCCCTGATGTTGACATGCACTCAGAGTTTGGTCAAATCATTCTCTGGTGTAACGAGGGGTCCACCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 90 bp ACTGGGGCATATGATCTTCACAAGACCAAGGGACTCTCCTCCCATTaGTGGCTGAATAGGCCATCACCTGCTACATATGCAACTAGAGAC +
Preference number: 1 (lower is better)
Translates to: TGAYDLHKTKGLSSH*WLNRPSPATYATRD
Trigger: GTCTCTAGTTGCATATGTAGCAGGTGATGGCCTATTCAGCCATCAATGGGAGGAGAGTCCCTTGGTCTTGTGAAGATCATATGCCCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 90 bp ACCGAGCAAAGAATTCAGCACAAAGCTTACAATGAGGCTTCCCTTTaGAGAACTGGTGTGAAGGGAACATGCTTGAAGAAGGGGCACAGG +
Preference number: 1 (lower is better)
Translates to: TEQRIQHKAYNEASL*RTGVKGTCLKKGHR
Trigger: CCTGTGCCCCTTCTTCAAGCATGTTCCCTTCACACCAGTTCTCCAAAGGGAAGCCTCATTGTAAGCTTTGTGCTGAATTCTTTGCTCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 90 bp AGCCAGCACTGGAGGCTAGAATTGAAAGAATTTCCACGGCCACCATaGTTTTGCCTTTCGAGCTCAGGTAAGCTGGTACAAAAGAAATCC +
Preference number: 1 (lower is better)
Translates to: SQHWRLELKEFPRPP*FCLSSSGKLVQKKS
Trigger: GGATTTCTTTTGTACCAGCTTACCTGAGCTCGAAAGGCAAAACCATGGTGGCCGTGGAAATTCTTTCAATTCTAGCCTCCAGTGCTGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 90 bp TTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATaGAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCA +
Preference number: 1 (lower is better)
Translates to: FYSVYTFHIAVDHQR*RAGTQAGQGAGADA
Trigger: TGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 90 bp CATCACCTGCTACATATGCAACTAGAGACACAGCTCTGGGGGCACTaGTTAGTTCATATTGTTGTTCTACCTATAGGGTTGCAAACCCCT +
Preference number: 1 (lower is better)
Translates to: HHLLHMQLETQLWGH*LVHIVVLPIGLQTP
Trigger: AGGGGTTTGCAACCCTATAGGTAGAACAACAATATGAACTAACCAGTGCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAGCAGGTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 90 bp ACCAGAATATGGAAGGACCTCTGCCTTAATGAGGATTTCTATTCCTaGACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTT +
Preference number: 1 (lower is better)
Translates to: TRIWKDLCLNEDFYS*TNIMTKKQLGRKGF
Trigger: AAAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTCATTAAGGCAGAGGTCCTTCCATATTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 90 bp AGGACCTCTGCCTTAATGAGGATTTCTATTCCTGCACAAACATCATaGCCAAGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACAC +
Preference number: 1 (lower is better)
Translates to: RTSALMRISIPAQTS*PRSSWGGKVLFSLH
Trigger: GTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTCATTAAGGCAGAGGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 90 bp ATCCCAAAAATAATTTGTCTCAAGACACAAGTGACTGTTCTAGGTTaGCCAATGAACATTAGTGAGCAAGAGAAACAGAGCTTTAGAGAA +
Preference number: 1 (lower is better)
Translates to: IPKIICLKTQVTVLG*PMNISEQEKQSFRE
Trigger: TTCTCTAAAGCTCTGTTTCTCTTGCTCACTAATGTTCATTGGCCAACCTAGAACAGTCACTTGTGTCTTGAGACAAATTATTTTTGGGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 90 bp CTGATCTTCAGGACACTTGATACATTGATCCATATCTGTTTTATTTaGAATTTCTCCATCTGGACATGGGACACAATCAAAACAACAGAA +
Preference number: 1 (lower is better)
Translates to: LIFRTLDTLIHICFI*NFSIWTWDTIKTTE
Trigger: TTCTGTTGTTTTGATTGTGTCCCATGTCCAGATGGAGAAATTGCAAATAAAACAGATATGGATCAATGTATCAAGTGTCCTGAAGATCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 90 bp GACACTGATTCCTCTGTTTATTTGGATACTGATCTTCAGGACACTTaGTACATTGATCCATATCTGTTTTATTTGCAATTTCTCCATCTG +
Preference number: 1 (lower is better)
Translates to: DTDSSVYLDTDLQDT*YIDPYLFYLQFLHL
Trigger: CAGATGGAGAAATTGCAAATAAAACAGATATGGATCAATGTATCAAGTGTCCTGAAGATCAGTATCCAAATAAACAGAGGAATCAGTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGAGTCTCTGGGCTCTTTaGCTCTCAGAGTGCACCCAT +
Preference number: 2 (lower is better)
Translates to: GADAEPMEECSLLACFPWSLWAL*LSECTH
Trigger: ATGGGTGCACTCTGAGAGGCAAAGAGCCCAGAGACT...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR TCA 90 bp ACCAAAGATGCAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCATTTCCTCAACTaGCGCTCCTTTCTCCATGAT +
Preference number: 2 (lower is better)
Translates to: TKDAGLELKQVREQELMQRHFLN*RSFLHD
Trigger: ATCATGGAGAAAGGAGCGTCAGTTGAGGAAATGCCT...CTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAATCGCCAACCTTCACATaGGCTTCAGTACCGCTCTGT +
Preference number: 2 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQSPTFT*ASVPLC
Trigger: ACAGAGCGGTACTGAAGCTCATGTGAAGGTTGGCGA...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGTCAGAGTGCACCCATTaGACTCACCAAAAACTGTGG +
Preference number: 2 (lower is better)
Translates to: GADAEPMEECSLLACFPWSECTH*THQKLW
Trigger: CCACAGTTTTTGGTGAGTGCAATGGGTGCACTCTGA...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CCA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGCTGATGCAGAGCCCATaGAGGAATGTTCTTTACTGG +
Preference number: 2 (lower is better)
Translates to: GADAEPMEECSLLACFPWLMQSP*RNVLYW
Trigger: CCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAG...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGGTTGATCACCAAAGATaGAGGGCTGGAACTCAAGCA +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRVDHQR*RAGTQA
Trigger: TGCTTGAGTTCCAGCCCTGCATCTTTGGTGATCAAC...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAAAATGAGGCTTCCCTTTaGAGAACTGGTGTGAAGGGA +
Preference number: 2 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQNEASL*RTGVKG
Trigger: TCCCTTCACACCAGTTCTCCAAAGGGAAGCCTCATT...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp ACCAAAGATGCAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGGTGACTGTTCTAGGTTaGCCAATGAACATTAGTGAG +
Preference number: 2 (lower is better)
Translates to: TKDAGLELKQVREQELMQVTVLG*PMNISE
Trigger: CTCACTAATGTTCATTGGCCAACCTAGAACAGTCAC...CTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACAAAGGTCTGCTTAGCCTaGACAGGCTGGGGAGGCCAC +
Preference number: 2 (lower is better)
Translates to: SFKVKALKTLKREGNLATKVCLA*TGWGGH
Trigger: GTGGCCTCCCCAGCCTGTTCAGGCTAAGCAGACCTT...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTCTAGAGACACAGCTCTaGGGGCACTGGTTAGTTCAT +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFLETQL*GHWLVH
Trigger: ATGAACTAACCAGTGCCCCCAGAGCTGTGTCTCTAG...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTTCAGGGAGCAGGAGCTaGTGCAGAGCCCATGGAGGA +
Preference number: 2 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVSGSRS*CRAHGG
Trigger: TCCTCCATGGGCTCTGCATCAGCTCCTGCTCCCTGA...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGGTCCTTATTTGCAGATaGCTTTATTCTCTGAGAGCC +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRVLICR*LYSLRA
Trigger: GGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGAC...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp AGGCAGGTGTCTGTCTTCAAGCAGATAAAGCCTATTGTTCAAGATATGTTTAGCCAACCCACCCACTCCTaGTTCCTGGCCCTGGCATTC +
Preference number: 2 (lower is better)
Translates to: RQVSVFKQIKPIVQDMFSQPTHS*FLALAF
Trigger: GAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTG...GCTAAACATATCTTGAACAATAGGCTTTATCTGCTTGAAGACAGACACCTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp ACTGGCTTGCTTCCCCTGGCTTGCTCAGACTGCTCTCTTATAGAACCCAAGACTTTCCCTTTGGAGAACTaGTGTGAAGGGAACATGCTT +
Preference number: 2 (lower is better)
Translates to: TGLLPLACSDCSLIEPKTFPLEN*CEGNML
Trigger: AAGCATGTTCCCTTCACACCAGTTCTCCAAAGGGAA...AGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGAAAATGTCCTACAGCTaGATCTCTTGGAGGCATTTC +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRKMSYS*ISWRHF
Trigger: GAAATGCCTCCAAGAGATCCAGCTGTAGGACATTTT...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACCTGGCTTGCTTCCCCTaGCTTGCTCAGACTGCTCTC +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHLACFP*LAQTAL
Trigger: GAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAG...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTCTGATGCAGAGCCCATaGAGGAATGTTCTTTACTGG +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFLMQSP*RNVLYW
Trigger: CCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAG...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp ACTGGCTTGCTTCCCCTGGCTTGCTCAGACTGCTCTCTTATAGAACCCAAGACTCGAGCTCAGGTAAGCTaGTACAAAAGAAATCCACAC +
Preference number: 2 (lower is better)
Translates to: TGLLPLACSDCSLIEPKTRAQVS*YKRNPH
Trigger: GTGTGGATTTCTTTTGTACCAGCTTACCTGAGCTCG...AGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCGCACAAAGCTTACAATaGGGCTTCCCTTTGGAGAAC +
Preference number: 2 (lower is better)
Translates to: PACVKLTHKTSQSRPLILAQSLQ*GFPLEN
Trigger: GTTCTCCAAAGGGAAGCCTCATTGTAAGCTTTGTGC...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGAGGAACTGGAATAAATaGACTCAAGTACAGAAAACC +
Preference number: 2 (lower is better)
Translates to: GADAEPMEECSLLACFPWRNWNK*TQVQKT
Trigger: GGTTTTCTGTACTTGAGTTCATTTATTCCAGTTCCT...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCCAACCCACCCACTCCTaGTTCCTGGCCCTGGCATTC +
Preference number: 2 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCQPTHS*FLALAF
Trigger: GAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTG...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGGAGGATTTCTATTCCTaGACAAACATCATGACCAAG +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGREDFYS*TNIMTK
Trigger: CTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTC...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGGCCAGAGAACAACCATaGAAAGATAACATTGGTTTA +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRAREQP*KDNIGL
Trigger: TAAACCAATGTTATCTTTTCATGGTTGTTCTCTGGC...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCCACCAGAGAATGATTTaGCCAAACTCTGAGTGCATG +
Preference number: 2 (lower is better)
Translates to: PACVKLTHKTSQSRPLILHQRMI*PNSECM
Trigger: CATGCACTCAGAGTTTGGTCAAATCATTCTCTGGTG...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGATATGGAAGGACCTCTaGCTTAATGAGGATTTCTAT +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRIWKDL*LNEDFY
Trigger: ATAGAAATCCTCATTAAGGCAGAGGTCCTTCCATAT...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTAAAATGTCCTACAGCTaGATCTCTTGGAGGCATTTC +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFKMSYS*ISWRHF
Trigger: GAAATGCCTCCAAGAGATCCAGCTGTAGGACATTTT...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp GACGCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCGATAACAGGGAAAGGTaGTTAAGTTGCAGATGCCAT +
Preference number: 2 (lower is better)
Translates to: DAPFSMITPACVKLTHKTDNRER*LSCRCH
Trigger: ATGGCATCTGCAACTTAATCACCTTTCCCTGTTATC...GGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGGACTCTCCTCCCATTaGTGGCTGAATAGGCCATCA +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCGLSSH*WLNRPS
Trigger: TGATGGCCTATTCAGCCATCAATGGGAGGAGAGTCC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CAAGTCCAATGGGCCTCTCTTTCCAGTGATAGCCGACTAGGCCATCTTTTGATAGTCAAGCTTGATTGCTaGAACTTCCTTGTTCACAGT +
Preference number: 2 (lower is better)
Translates to: QVQWASLSSDSRLGHLLIVKLDC*NFLVHS
Trigger: ACTGTGAACAAGGAAGTTTCAGCAATCAAGCTTGAC...TATCAAAAGATGGCCTAGTCGGCTATCACTGGAAAGAGAGGCCCATTGGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACCTTTGCCTCTCAGAGTaGACCCATTGCACTCACCAA +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHLCLSE*THCTHQ
Trigger: TTGGTGAGTGCAATGGGTGCACTCTGAGAGGCAAAG...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACCTAGAGACACAGCTCTaGGGGCACTGGTTAGTTCAT +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHLETQL*GHWLVH
Trigger: ATGAACTAACCAGTGCCCCCAGAGCTGTGTCTCTAG...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGAGAGTTAAGGAGCAATaGAAATATAGAGCATATGTG +
Preference number: 2 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRRVKEQ*KYRAYV
Trigger: CACATATGCTCTATATTTCCATTGCTCCTTAACTCT...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTCTCATTTGCAGAGACTaGTTTTGTCCACATGCATTT +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFLICRD*FCPHAF
Trigger: AAATGCATGTGGACAAAACCAGTCTCTGCAAATGAG...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR TCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACGCACAAAGCTTACAATaGGGCTTCCCTTTGGAGAAC +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHAQSLQ*GFPLEN
Trigger: GTTCTCCAAAGGGAAGCCTCATTGTAAGCTTTGTGC...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTATGGACAACTTTGACTaGAAACAGATAAAGGAGTCT +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFMDNFD*KQIKES
Trigger: AGACTCCTTTATCTGTTTGCAGTCAAAGTTGTCCAT...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATCTGGCTTGCTTCCCCTaGCTTGCTCAGACTGCTCTC +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDLACFP*LAQTAL
Trigger: GAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAG...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCGCCAGAGAACAACCATaGAAAGATAACATTGGTTTA +
Preference number: 2 (lower is better)
Translates to: PACVKLTHKTSQSRPLILAREQP*KDNIGL
Trigger: TAAACCAATGTTATCTTTTCATGGTTGTTCTCTGGC...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTAATATAGAGCATATGTaGCCTGTATTTGAACTCCAA +
Preference number: 2 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFNIEHM*PVFELQ
Trigger: TTGGAGTTCAAATACAGGGCACATATGCTCTATATT...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp GACGCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAAGAGAGGGAAATCTTaGCACAAAATAATGGCTAAG +
Preference number: 2 (lower is better)
Translates to: DAPFSMITPACVKLTHKTKRGKS*HKIMAK
Trigger: CTTAGCCATTATTTTGTGGCAAGATTTCCCTCTCTT...GGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGCGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCATGGACAACTTTGACTaGAAACAGATAAAGGAGTCT +
Preference number: 2 (lower is better)
Translates to: PACVKLTHKTSQSRPLILMDNFD*KQIKES
Trigger: AGACTCCTTTATCTGTTTGCAGTCAAAGTTGTCCAT...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTAATGAGGCTTCCCTTTaGAGAACTGGTGTGAAGGGA +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCNEASL*RTGVKG
Trigger: TCCCTTCACACCAGTTCTCCAAAGGGAAGCCTCATT...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGGCAGGTGTCTGTCTTCAAGCAGATAAAGCCTATTGTTCAAGATATGTTTAGCAATGAGGCTTCCCTTTaGAGAACTGGTGTGAAGGGA +
Preference number: 2 (lower is better)
Translates to: RQVSVFKQIKPIVQDMFSNEASL*RTGVKG
Trigger: TCCCTTCACACCAGTTCTCCAAAGGGAAGCCTCATT...GCTAAACATATCTTGAACAATAGGCTTTATCTGCTTGAAGACAGACACCTGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACGCAGGCAGAAAGTTCTaGTATTTAGCACTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHAGRKF*YLALER
Trigger: CCTTTCCAGTGCTAAATACCAGAACTTTCTGCCTGC...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATCTGAGTCAAAGTCTCTaGGCTCTTTGCCTCTCAGAG +
Preference number: 2 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYLSQSL*ALCLSE
Trigger: CTCTGAGAGGCAAAGAGCCCAGAGACTTTGACTCAG...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR TCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACAGGACTCTCCTCCCATTaGTGGCTGAATAGGCCATCA +
Preference number: 2 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTGLSSH*WLNRPS
Trigger: TGATGGCCTATTCAGCCATCAATGGGAGGAGAGTCC...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCTATGTGCCCTGTATTTaGACTCCAACTGAAATTCAT +
Preference number: 2 (lower is better)
Translates to: FLHDNSSLCQVDTQNQPVYVPCI*TPTEIH
Trigger: ATGAATTTCAGTTGGAGTTCAAATACAGGGCACATA...GACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCAGAGTTAAGGAGCAATaGAAATATAGAGCATATGTG +
Preference number: 2 (lower is better)
Translates to: PACVKLTHKTSQSRPLILRVKEQ*KYRAYV
Trigger: CACATATGCTCTATATTTCCATTGCTCCTTAACTCT...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGATAACAGGGAAAGGTaGTTAAGTTGCAGATGCCAT +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCDNRER*LSCRCH
Trigger: ATGGCATCTGCAACTTAATCACCTTTCCCTGTTATC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACATCCTTGATCACTAATTaGGAAAATGTCCTACAGCTG +
Preference number: 2 (lower is better)
Translates to: SFKVKALKTLKREGNLATSLITN*ENVLQL
Trigger: CAGCTGTAGGACATTTTCTCAATTAGTGATCAAGGA...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGATGACTTTATTCTCTaGGAGCCAGATCCTAACCTT +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCDDFIL*EPDPNL
Trigger: AAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGTCCTTATTTGCAGATaGCTTTATTCTCTGAGAGCC +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCVLICR*LYSLRA
Trigger: GGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGAC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTAAACCAGTCAGAATTTaGAAAGGAGCCCAAAGTTTA +
Preference number: 2 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIKPVRI*KGAQSL
Trigger: TAAACTTTGGGCTCCTTTTCAAATTCTGACTGGTTT...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR TCA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATACGTTACACCAGAGAATaGTTTGACCAAACTCTGAGT +
Preference number: 2 (lower is better)
Translates to: RSSVTQYKSGDILLIVRIRYTRE*FDQTLS
Trigger: ACTCAGAGTTTGGTCAAATCATTCTCTGGTGTAACG...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACGAGGATTTCTATTCCTaGACAAACATCATGACCAAG +
Preference number: 2 (lower is better)
Translates to: CPYLQMTLFSESQILTFHEDFYS*TNIMTK
Trigger: CTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTC...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp TGGGAAGAAATATACATCCCAGTAAGCCAGCACTGGAGGCTAGAATTGAAAGAATTGCAAAAGCTCATTTaGAGAGACTGGTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: WEEIYIPVSQHWRLELKELQKLI*RDWFCP
Trigger: TGGACAAAACCAGTCTCTGCAAATGAGCTTTTGCAA...TTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR GCA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTTTCATAGAGTCAGATTaGAGAGATAGCAAGCTAGAC +
Preference number: 2 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFFIESD*RDSKLD
Trigger: GTCTAGCTTGCTATCTCTGCAATCTGACTCTATGAA...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CCA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCTTCCCTTTGGAGAACTaGTGTGAAGGGAACATGCTT +
Preference number: 2 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCFPLEN*CEGNML
Trigger: AAGCATGTTCCCTTCACACCAGTTCTCCAAAGGGAA...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CAA 90 bp AATGAGGATTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTaGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTG +
Preference number: 2 (lower is better)
Translates to: NEDFYSCTNIMTKKQ*GRKGFIQFTLSTLL
Trigger: CAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCGATAACAGGGAAAGGTaGTTAAGTTGCAGATGCCAT +
Preference number: 2 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCDNRER*LSCRCH
Trigger: ATGGCATCTGCAACTTAATCACCTTTCCCTGTTATC...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp GGCCAAAAATACCATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTGGATAGCACAAAGCTTACAATaGGGCTTCCCTTTGGAGAAC +
Preference number: 2 (lower is better)
Translates to: GQKYHNFRETLIPLFIWIAQSLQ*GFPLEN
Trigger: GTTCTCCAAAGGGAAGCCTCATTGTAAGCTTTGTGC...TATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGTATTTTTGGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATAGGCATTTCCTCAACTaGCGCTCCTTTCTCCATGAT +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDRHFLN*RSFLHD
Trigger: ATCATGGAGAAAGGAGCGTCAGTTGAGGAAATGCCT...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGGCAGGTGTCTGTCTTCAAGCAGATAAAGCCTATTGTTCAAGATATGTTTAGCTCCTTGATCACTAATTaGGAAAATGTCCTACAGCTG +
Preference number: 2 (lower is better)
Translates to: RQVSVFKQIKPIVQDMFSSLITN*ENVLQL
Trigger: CAGCTGTAGGACATTTTCTCAATTAGTGATCAAGGA...GCTAAACATATCTTGAACAATAGGCTTTATCTGCTTGAAGACAGACACCTGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATGATGACTTTATTCTCTaGGAGCCAGATCCTAACCTT +
Preference number: 2 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYDDFIL*EPDPNL
Trigger: AAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATC...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATTTGCTTCCCCTGGCTTaGTCAGACTGCTCTCTTATA +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDLLPLA*SDCSLI
Trigger: TATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAA...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACAGCAGATGCCATTGTTTaGAGAAATGTATTGACTACA +
Preference number: 2 (lower is better)
Translates to: SFKVKALKTLKREGNLATADAIV*RNVLTT
Trigger: TGTAGTCAATACATTTCTCCAAACAATGGCATCTGC...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATAGGAATGTTCTTTACTaGCTTGCTTCCCCTGGCTTG +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDRNVLY*LASPGL
Trigger: CAAGCCAGGGGAAGCAAGCCAGTAAAGAACATTCCT...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp TACTGGTTAGTTCATAATGTTGTTGTACCTGCAGGGTTGCAGATCTCTTTAGCTACTCACCAAAAACTGTaGGCTATCTCCAGAAATCTT +
Preference number: 2 (lower is better)
Translates to: YWLVHNVVVPAGLQISLATHQKL*AISRNL
Trigger: AAGATTTCTGGAGATAGCCCACAGTTTTTGGTGAGT...AGCTAAAGAGATCTGCAACCCTGCAGGTACAACAACATTATGAACTAACCAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR GCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTATATGGAAGGACCTCTaGCTTAATGAGGATTTCTAT +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCIWKDL*LNEDFY
Trigger: ATAGAAATCCTCATTAAGGCAGAGGTCCTTCCATAT...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGAGATTTCTGTTATTTaGTCTGACAATGGGTGTTTC +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCEISVI*SDNGCF
Trigger: GAAACACCCATTGTCAGAGCAAATAACAGAAATCTC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATAGCAGATGCCATTGTTTaGAGAAATGTATTGACTACA +
Preference number: 2 (lower is better)
Translates to: RSSVTQYKSGDILLIVRIADAIV*RNVLTT
Trigger: TGTAGTCAATACATTTCTCCAAACAATGGCATCTGC...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGGCAGGTGTCTGTCTTCAAGCAGATAAAGCCTATTGTTCAAGATATGTTTAGCGCAGATGCCATTGTTTaGAGAAATGTATTGACTACA +
Preference number: 2 (lower is better)
Translates to: RQVSVFKQIKPIVQDMFSADAIV*RNVLTT
Trigger: TGTAGTCAATACATTTCTCCAAACAATGGCATCTGC...GCTAAACATATCTTGAACAATAGGCTTTATCTGCTTGAAGACAGACACCTGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATTATGTGCCCTGTATTTaGACTCCAACTGAAATTCAT +
Preference number: 2 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYYVPCI*TPTEIH
Trigger: ATGAATTTCAGTTGGAGTTCAAATACAGGGCACATA...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR GCA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTAATATAGAGCATATGTaGCCTGTATTTGAACTCCAA +
Preference number: 2 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVNIEHM*PVFELQ
Trigger: TTGGAGTTCAAATACAGGGCACATATGCTCTATATT...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTCTAAAACACATATCTTaGCTGAACCTAACCAAGAAA +
Preference number: 2 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCLKHIS*LNLTKK
Trigger: TTTCTTGGTTAGGTTCAGCCAAGATATGTGTTTTAG...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATTCCTTGATCACTAATTaGGAAAATGTCCTACAGCTG +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDSLITN*ENVLQL
Trigger: CAGCTGTAGGACATTTTCTCAATTAGTGATCAAGGA...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATTTAGTCCATGACCCATaGAGGTATACAGAGATCTAT +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDLVHDP*RYTEIY
Trigger: ATAGATCTCTGTATACCTTCATGGGTCATGGACTAA...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR TCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACAGCCAGAGAACAACCATaGAAAGATAACATTGGTTTA +
Preference number: 2 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTAREQP*KDNIGL
Trigger: TAAACCAATGTTATCTTTTCATGGTTGTTCTCTGGC...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR TCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATTATGTGCCCTGTATTTaGACTCCAACTGAAATTCAT +
Preference number: 2 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDYVPCI*TPTEIH
Trigger: ATGAATTTCAGTTGGAGTTCAAATACAGGGCACATA...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp AAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGCCCATaGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGC +
Preference number: 3 (lower is better)
Translates to: KQVREQELMQSP*RNVLYWLASPG
Trigger: GCCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCCTGCTCCCTGACCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp ACCAAAGATGCAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGCTTGCTTCCCCTGGCTaGCTCAGACTGCTCTCTTAT +
Preference number: 3 (lower is better)
Translates to: TKDAGLELKQVREQELMQLASPG*LRLLSY
Trigger: ATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAG...CTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp ACCAAAGATGCAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGCCCTCAACAGCTGTTTaGCTAAATCCAAATGGACAA +
Preference number: 3 (lower is better)
Translates to: TKDAGLELKQVREQELMQPSTAV*LNPNGQ
Trigger: TTGTCCATTTGGATTTAGCAAAACAGCTGTTGAGGG...CTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp CTGAGTCAAAGTCTCTGGGCTCTTTGCCTCTCAGAGTaGACCCATTGCACTCACCAAAAACTGTGGGCTATC +
Preference number: 3 (lower is better)
Translates to: LSQSLWALCLSE*THCTHQKLWAI
Trigger: GATAGCCCACAGTTTTTGGTGAGTGCAATGGGTGCACTCTGAGAGGCAAAGAGCCCAGAGACTTTGACTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR GCA 72 bp GACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTaGCTAGTCTCACAAGAGACAGCTAACAACAACAGA +
Preference number: 3 (lower is better)
Translates to: DCEHPLLCLLGP*LVSQETANNNR
Trigger: TCTGTTGTTGTTAGCTGTCTCTTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp GGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGCTTaGTCAGACTGCTCTCTTATAGAACCCAAGACTACC +
Preference number: 3 (lower is better)
Translates to: GGMFFTGLLPLA*SDCSLIEPKTT
Trigger: GGTAGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp GTTTACACTTTCCACATTGCTGTTGATCACCAAAGATaGAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGA +
Preference number: 3 (lower is better)
Translates to: VYTFHIAVDHQR*RAGTQAGQGAG
Trigger: TCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp AGTCTCTGGGCTCTTTGCCTCTCAGAGTGCACCCATTaGACTCACCAAAAACTGTGGGCTATCTCCAGAAAT +
Preference number: 3 (lower is better)
Translates to: SLWALCLSECTH*THQKLWAISRN
Trigger: ATTTCTGGAGATAGCCCACAGTTTTTGGTGAGTGCAATGGGTGCACTCTGAGAGGCAAAGAGCCCAGAGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR GCA 72 bp AACATCAGGGAAAGGGGGATATGTTCCCAGCCAGACTaGACAGATGCACACTTGAATGATGGAACCACAGCA +
Preference number: 3 (lower is better)
Translates to: NIRERGICSQPD*TDAHLNDGTTA
Trigger: TGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAACATATCCCCCTTTCCCTGATGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGCCTAAAACACATATCTaGGCTGAACCTAACCAAGAA +
Preference number: 3 (lower is better)
Translates to: GADAEPMEECSLLACFPWPKTHI*AEPNQE
Trigger: TTCTTGGTTAGGTTCAGCCAAGATATGTGTTTTAGG...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp ACCAAAGATGCAGGGCTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGCCATATCTGTTTTATTaGCAATTTCTCCATCTGGAC +
Preference number: 3 (lower is better)
Translates to: TKDAGLELKQVREQELMQPYLFY*QFLHLD
Trigger: GTCCAGATGGAGAAATTGCAAATAAAACAGATATGG...CTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGCCCTGCATCTTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp CACCCACAAAGGGCCCTCTCATCCTTGATCACTAATTaGGAAAATGTCCTACAGCTGGATCTCTTGGAGGCA +
Preference number: 3 (lower is better)
Translates to: HPQRALSSLITN*ENVLQLDLLEA
Trigger: TGCCTCCAAGAGATCCAGCTGTAGGACATTTTCTCAATTAGTGATCAAGGATGAGAGGGCCCTTTGTGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp ATGTTCCCAGCCAGACTGCACAGATGCACACTTGAATaGTGGAACCACAGCAGACTATGGCATTTGAGAGTC +
Preference number: 3 (lower is better)
Translates to: MFPARLHRCTLE*WNHSRLWHLRV
Trigger: GACTCTCAAATGCCATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp GGATATGTTCCCAGCCAGACTGCACAGATGCACACTTaGATGATGGAACCACAGCAGACTATGGCATTTGAG +
Preference number: 3 (lower is better)
Translates to: GYVPSQTAQMHT*MMEPQQTMAFE
Trigger: CTCAAATGCCATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAACATATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGGGAAGAAATATACATCCCAGTAAGCCAGCACTGGAGGCTAGAATTGAAAGAACATCCACTTCTGTGTTaGCTAGGCCCCTGCCTAGTC +
Preference number: 3 (lower is better)
Translates to: WEEIYIPVSQHWRLELKEHPLLC*LGPCLV
Trigger: GACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATG...TTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGAAAACCAGTCAGAATTaGAAAAGGAGCCCAAAGTTT +
Preference number: 3 (lower is better)
Translates to: GADAEPMEECSLLACFPWKTSQN*KRSPKF
Trigger: AAACTTTGGGCTCCTTTTCAAATTCTGACTGGTTTT...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CAA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTCATCCACTTCTGTGTTaGCTAGGCCCCTGCCTAGTC +
Preference number: 3 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVHPLLC*LGPCLV
Trigger: GACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATG...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TACTGGTTAGTTCATAATGTTGTTGTACCTGCAGGGTTGCAGATCTCTTTAGCTCATCCACTTCTGTGTTaGCTAGGCCCCTGCCTAGTC +
Preference number: 3 (lower is better)
Translates to: YWLVHNVVVPAGLQISLAHPLLC*LGPCLV
Trigger: GACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATG...AGCTAAAGAGATCTGCAACCCTGCAGGTACAACAACATTATGAACTAACCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp TATGATCTTCACAAGACCAAGGGACTCTCCTCCCATTaGTGGCTGAATAGGCCATCACCTGCTACATATGCA +
Preference number: 3 (lower is better)
Translates to: YDLHKTKGLSSH*WLNRPSPATYA
Trigger: TGCATATGTAGCAGGTGATGGCCTATTCAGCCATCAATGGGAGGAGAGTCCCTTGGTCTTGTGAAGATCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp CCCCTCGTTACACCAGAGAATGATTTGACCAAACTCTaGGTGCATGTCAACATCAGGGAAAGGGGGATATGT +
Preference number: 3 (lower is better)
Translates to: PLVTPENDLTKL*VHVNIRERGIC
Trigger: ACATATCCCCCTTTCCCTGATGTTGACATGCACTCAGAGTTTGGTCAAATCATTCTCTGGTGTAACGAGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp TGGAAGGACCTCTGCCTTAATGAGGATTTCTATTCCTaGACAAACATCATGACCAAGAAGCAGTTGGGGAGG +
Preference number: 3 (lower is better)
Translates to: WKDLCLNEDFYS*TNIMTKKQLGR
Trigger: CCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAATCCTCATTAAGGCAGAGGTCCTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GACGCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCGGAAAGGTGATTAAGTaGCAGATGCCATTGTTTGGA +
Preference number: 3 (lower is better)
Translates to: DAPFSMITPACVKLTHKTGKVIK*QMPLFG
Trigger: TCCAAACAATGGCATCTGCAACTTAATCACCTTTCC...GGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp CATCACCTGCTACATATGCAACTAGAGACACAGCTCTaGGGGCACTGGTTAGTTCATATTGTTGTTCTACCT +
Preference number: 3 (lower is better)
Translates to: HHLLHMQLETQL*GHWLVHIVVLP
Trigger: AGGTAGAACAACAATATGAACTAACCAGTGCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAGCAGGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTCCTGGTTTGATGGCTTaGAAAGCCATAACCACAATG +
Preference number: 3 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIPGLMA*KAITTM
Trigger: CATTGTGGTTATGGCTTTCAAAGCCATCAAACCAGG...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp CTACATATGCAACTAGAGACACAGCTCTGGGGGCACTaGTTAGTTCATATTGTTGTTCTACCTATAGGGTTG +
Preference number: 3 (lower is better)
Translates to: LHMQLETQLWGH*LVHIVVLPIGL
Trigger: CAACCCTATAGGTAGAACAACAATATGAACTAACCAGTGCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GACGCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAACCCCTTTAGCTACTaGGGTACTTTCTTTTTCTTT +
Preference number: 3 (lower is better)
Translates to: DAPFSMITPACVKLTHKTNPFSY*GTFFFF
Trigger: AAAGAAAAAGAAAGTACCCAAGTAGCTAAAGGGGTT...GGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGCGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTAGGTCAAGAACATTATaGGAAGTAACTGCCCAAGTG +
Preference number: 3 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIRSRTL*EVTAQV
Trigger: CACTTGGGCAGTTACTTCCAATAATGTTCTTGACCT...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR TCA 72 bp AAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTaGTCACCAAAGATGCAGGGCTGGAACTCAAGCAGG +
Preference number: 3 (lower is better)
Translates to: KVLFSLHFPHCC*SPKMQGWNSSR
Trigger: CCTGCTTGAGTTCCAGCCCTGCATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR TCA 72 bp GAACCAGCCAGCAGAACTCAGAAAGAGATAGACAGGTaGGCTTATTCAGCATTAAGTCTCAATGGCTGTAAA +
Preference number: 3 (lower is better)
Translates to: EPASRTQKEIDR*AYSALSLNGCK
Trigger: TTTACAGCCATTGAGACTTAATGCTGAATAAGCTCACCTGTCTATCTCTTTCTGAGTTCTGCTGGCTGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CAA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTTGCAGATGCCATTGTTaGGAGAAATGTATTGACTAC +
Preference number: 3 (lower is better)
Translates to: CRVADLFSSLDTFSSSSICRCHC*EKCIDY
Trigger: GTAGTCAATACATTTCTCCAAACAATGGCATCTGCA...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATCTTGCTTCCCCTGGCTaGCTCAGACTGCTCTCTTAT +
Preference number: 3 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDLASPG*LRLLSY
Trigger: ATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAG...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTTTTGCAAAAGCTCATTaGCAGAGACTGGTTTTGTCC +
Preference number: 3 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFFAKAH*QRLVLS
Trigger: GGACAAAACCAGTCTCTGCAAATGAGCTTTTGCAAA...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CAA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACTGCAGATGCCATTGTTaGGAGAAATGTATTGACTAC +
Preference number: 3 (lower is better)
Translates to: CPYLQMTLFSESQILTFHCRCHC*EKCIDY
Trigger: GTAGTCAATACATTTCTCCAAACAATGGCATCTGCA...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGGAAAGGTGATTAAGTaGCAGATGCCATTGTTTGGA +
Preference number: 3 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCGKVIK*QMPLFG
Trigger: TCCAAACAATGGCATCTGCAACTTAATCACCTTTCC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTAACCCCTTTAGCTACTaGGGTACTTTCTTTTTCTTT +
Preference number: 3 (lower is better)
Translates to: CRVADLFSSLDTFSSSSINPFSY*GTFFFF
Trigger: AAAGAAAAAGAAAGTACCCAAGTAGCTAAAGGGGTT...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACGTTCCAATTTCTATCTaGAAGAGAATCTGGTGCTCA +
Preference number: 3 (lower is better)
Translates to: CPYLQMTLFSESQILTFHVPISI*KRIWCS
Trigger: TGAGCACCAGATTCTCTTCAAGATAGAAATTGGAAC...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTGTTCCAATTTCTATCTaGAAGAGAATCTGGTGCTCA +
Preference number: 3 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFVPISI*KRIWCS
Trigger: TGAGCACCAGATTCTCTTCAAGATAGAAATTGGAAC...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACACCTAAAACACATATCTaGGCTGAACCTAACCAAGAA +
Preference number: 3 (lower is better)
Translates to: SFKVKALKTLKREGNLATPKTHI*AEPNQE
Trigger: TTCTTGGTTAGGTTCAGCCAAGATATGTGTTTTAGG...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACCCAGCATGTCCTTATTaGCAGATGACTTTATTCTCT +
Preference number: 3 (lower is better)
Translates to: CPYLQMTLFSESQILTFHPACPY*QMTLFS
Trigger: AGAGAATAAAGTCATCTGCAAATAAGGACATGCTGG...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATCCTGGTTTGATGGCTTaGAAAGCCATAACCACAATG +
Preference number: 3 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYPGLMA*KAITTM
Trigger: CATTGTGGTTATGGCTTTCAAAGCCATCAAACCAGG...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTAAGATGCTTCCTGGTTaGATGGCTTTGAAAGCCATA +
Preference number: 3 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVKMLPG*MALKAI
Trigger: TATGGCTTTCAAAGCCATCAAACCAGGAAGCATCTT...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATATGCAGATGCCATTGTTaGGAGAAATGTATTGACTAC +
Preference number: 3 (lower is better)
Translates to: RSSVTQYKSGDILLIVRICRCHC*EKCIDY
Trigger: GTAGTCAATACATTTCTCCAAACAATGGCATCTGCA...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp TGGGAAGAAATATACATCCCAGTAAGCCAGCACTGGAGGCTAGAATTGAAAGAAAACCCCTTTAGCTACTaGGGTACTTTCTTTTTCTTT +
Preference number: 3 (lower is better)
Translates to: WEEIYIPVSQHWRLELKENPFSY*GTFFFF
Trigger: AAAGAAAAAGAAAGTACCCAAGTAGCTAAAGGGGTT...TTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp AGGCAGGTGTCTGTCTTCAAGCAGATAAAGCCTATTGTTCAAGATATGTTTAGCGTTCCAATTTCTATCTaGAAGAGAATCTGGTGCTCA +
Preference number: 3 (lower is better)
Translates to: RQVSVFKQIKPIVQDMFSVPISI*KRIWCS
Trigger: TGAGCACCAGATTCTCTTCAAGATAGAAATTGGAAC...GCTAAACATATCTTGAACAATAGGCTTTATCTGCTTGAAGACAGACACCTGCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATATGACCAAGAAGCAGTaGGGGAGGAAAGGTTTTATT +
Preference number: 3 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYMTKKQ*GRKGFI
Trigger: AATAAAACCTTTCCTCCCCAACTGCTTCTTGGTCAT...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp ATAATTTGTCTCAAGACACAAGTGACTGTTCTAGGTTaGCCAATGAACATTAGTGAGCAAGAGAAACAGAGC +
Preference number: 3 (lower is better)
Translates to: IICLKTQVTVLG*PMNISEQEKQS
Trigger: GCTCTGTTTCTCTTGCTCACTAATGTTCATTGGCCAACCTAGAACAGTCACTTGTGTCTTGAGACAAATTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATCCAGCATGTCCTTATTaGCAGATGACTTTATTCTCT +
Preference number: 3 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYPACPY*QMTLFS
Trigger: AGAGAATAAAGTCATCTGCAAATAAGGACATGCTGG...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp TATAATTCTTACAGTGATTCTGCAGGCAGAAAGTTCTaGTATTTAGCACTGGAAAGGACAAAGTTAGGGTAC +
Preference number: 3 (lower is better)
Translates to: YNSYSDSAGRKF*YLALERTKLGY
Trigger: GTACCCTAACTTTGTCCTTTCCAGTGCTAAATACCAGAACTTTCTGCCTGCAGAATCACTGTAAGAATTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR GCA 72 bp TCAGAGTTAAGGAGCAATGGAAATATAGAGCATATGTaGCCTGTATTTGAACTCCAACTGAAATTCATAAGG +
Preference number: 3 (lower is better)
Translates to: SELRSNGNIEHM*PVFELQLKFIR
Trigger: CCTTATGAATTTCAGTTGGAGTTCAAATACAGGGCACATATGCTCTATATTTCCATTGCTCCTTAACTCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR GCA 72 bp GACAACTTTGACTGCAAACAGATAAAGGAGTCTGACTaGGGTGTTTACCCCAAGTTATTATTTTGTCATTTA +
Preference number: 3 (lower is better)
Translates to: DNFDCKQIKESD*GVYPKLLFCHL
Trigger: TAAATGACAAAATAATAACTTGGGGTAAACACCGCAGTCAGACTCCTTTATCTGTTTGCAGTCAAAGTTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
3UTR-3UTR CAA 90 bp GGCCAAAAATACCATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTGGATATTGCAGAGACTGGTTTaGTCCACATGCATTTATTTT +
Preference number: 3 (lower is better)
Translates to: GQKYHNFRETLIPLFIWILQRLV*STCIYF
Trigger: AAAATAAATGCATGTGGACAAAACCAGTCTCTGCAA...TATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGTATTTTTGGCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
3UTR-3UTR CAA 90 bp GGCCAAAAATACCATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTGGATACCATATCTGTTTTATTaGCAATTTCTCCATCTGGAC +
Preference number: 3 (lower is better)
Translates to: GQKYHNFRETLIPLFIWIPYLFY*QFLHLD
Trigger: GTCCAGATGGAGAAATTGCAAATAAAACAGATATGG...TATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGTATTTTTGGCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp CATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTaGATACTGATCTTCAGGACACTTGATACATTGATC +
Preference number: 3 (lower is better)
Translates to: HNFRETLIPLFI*ILIFRTLDTLI
Trigger: GATCAATGTATCAAGTGTCCTGAAGATCAGTATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CCA 72 bp AAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTaGAGGAAATACTATTGTAAAACCAATTATTATGCC +
Preference number: 3 (lower is better)
Translates to: KTSQSRPLILMY*RKYYCKTNYYA
Trigger: GGCATAATAATTGGTTTTACAATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAACAGTGTTCTCCTCATTaGTGCTTCTCCCAAGTTGGC +
Preference number: 4 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQQCSPH*CFSQVG
Trigger: GCCAACTTGGGAGAAGCACCAATGAGGAGAACACTG...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
3UTR CAA 72 bp CATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTaGCTAGGCCCCTGCCTAGTCTCACAAGAGACAGCT +
Preference number: 4 (lower is better)
Translates to: HPIADCEHPLLC*LGPCLVSQETA
Trigger: AGCTGTCTCTTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp GGAGCTGATGCAGAGCCCATGGAGGAATGTTCTTTACTGGCTTGCTTCCCCTGGAAGAACAGTTCCCAGTaGATCTTCATGGGCCAAAAA +
Preference number: 4 (lower is better)
Translates to: GADAEPMEECSLLACFPWKNSSQ*IFMGQK
Trigger: TTTTTGGCCCATGAAGATCCACTGGGAACTGTTCTT...CCAGGGGAAGCAAGCCAGTAAAGAACATTCCTCCATGGGCTCTGCATCAGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR TCA 90 bp TTGCCAGCTCCTTATTTCCAGTACATCAAAGCTCCCAGCTGCAGCCAAGGCAGGGTTCCTGGAATAAAATaGGAACAACTAGGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: LPAPYFQYIKAPSCSQGRVPGIK*EQLGER
Trigger: TCTCTCCCCTAGTTGTTCTCATTTTATTCCAGGAAC...CCTGCCTTGGCTGCAGCTGGGAGCTTTGATGTACTGGAAATAAGGAGCTGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTCAAAAGGAGCATAGCTaGTCTGTGGGACGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFQKEHS*SVGRCR
Trigger: TCTACAACGTCCCACAGATCAGCTATGCTCCTTTTG...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAACGTTACACCAGAGAATaGTTTGACCAAACTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQRYTRE*FDQTLS
Trigger: ACTCAGAGTTTGGTCAAATCATTCTCTGGTGTAACG...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAATCTCTGGGCATAATTTaGATATGGAGAGGTATGGCA +
Preference number: 4 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQSLGII*IWRGMA
Trigger: TGCCATACCTCTCCATATCCAAATTATGCCCAGAGA...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp CAAGTCCAATGGGCCTCTCTTTCCAGTGATAGCCGACTAGGCCATCTTTTGATACAAAAGGAGCATAGCTaGTCTGTGGGACGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: QVQWASLSSDSRLGHLLIQKEHS*SVGRCR
Trigger: TCTACAACGTCCCACAGATCAGCTATGCTCCTTTTG...TATCAAAAGATGGCCTAGTCGGCTATCACTGGAAAGAGAGGCCCATTGGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR GCA 90 bp AATGGCCAAGGAGACAAGAACAGTTCCCAGTGGATCTTCATGGGCCAAAAATACTGTTCTCCTCATTGGTaGTTCTCCCAAGTTGGCCCT +
Preference number: 4 (lower is better)
Translates to: NGQGDKNSSQWIFMGQKYCSPHW*FSQVGP
Trigger: AGGGCCAACTTGGGAGAAGCACCAATGAGGAGAACA...GTATTTTTGGCCCATGAAGATCCACTGGGAACTGTTCTTGTCTCCTTGGCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
CDS-3UTR CCA 90 bp ACTGGCTTGCTTCCCCTGGCTTGCTCAGACTGCTCTCTTATAGAACCCAAGACTCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGAT +
Preference number: 4 (lower is better)
Translates to: TGLLPLACSDCSLIEPKTHGRGA*SKHLLD
Trigger: ATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATG...AGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCGTGCTTCTCCCAAGTTaGCCCTTTTGTAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: PACVKLTHKTSQSRPLILVLLPS*PFCRNG
Trigger: TCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCAC...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACATCGCCAACCTTCACATaGGCTTCAGTACCGCTCTGT +
Preference number: 4 (lower is better)
Translates to: SFKVKALKTLKREGNLATSPTFT*ASVPLC
Trigger: ACAGAGCGGTACTGAAGCTCATGTGAAGGTTGGCGA...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR TCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACTCGCCAACCTTCACATaGGCTTCAGTACCGCTCTGT +
Preference number: 4 (lower is better)
Translates to: CPYLQMTLFSESQILTFHSPTFT*ASVPLC
Trigger: ACAGAGCGGTACTGAAGCTCATGTGAAGGTTGGCGA...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR TCA 90 bp TACTGGTTAGTTCATAATGTTGTTGTACCTGCAGGGTTGCAGATCTCTTTAGCTGTGACAGCACTTCTGTaGCAACAGCTCTCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: YWLVHNVVVPAGLQISLAVTALL*QQLSLG
Trigger: GCCCAGAGAGAGCTGTTGTCACAGAAGTGCTGTCAC...AGCTAAAGAGATCTGCAACCCTGCAGGTACAACAACATTATGAACTAACCAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCACTGAAGCTGGACTCTaGTCCCAAGAATCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: FLHDNSSLCQVDTQNQPVTEAGL*SQESGQ
Trigger: TTGACCAGATTCTTGGGACCAGAGTCCAGCTTCAGT...GACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp ACTGGCTTGCTTCCCCTGGCTTGCTCAGACTGCTCTCTTATAGAACCCAAGACTTGCAATTTCTCCATCTaGACATGGGACACAATCAAA +
Preference number: 4 (lower is better)
Translates to: TGLLPLACSDCSLIEPKTCNFSI*TWDTIK
Trigger: TTTGATTGTGTCCCATGTCCAGATGGAGAAATTGCA...AGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR GCA 90 bp GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTGCCTAGTCTCACAACGCAAAAACATATTCTaGTATATGGCTTGTATCTTC +
Preference number: 4 (lower is better)
Translates to: ADCEHPLLCLLGPCLVSQRKNIF*YMACIF
Trigger: GAAGATACAAGCCATATAGCAGAATATGTTTTTGCG...TTGTGAGACTAGGCAGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTGGAGTAAACATTTATTaGATGAGTCTCCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFGVNIY*MSLLPL
Trigger: GAGTGGAAGGAGACTCATCCAATAAATGTTTACTCC...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CAA 72 bp GCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTaGACACACAAAACCAGCCAGTCAAGACCTCTTATA +
Preference number: 4 (lower is better)
Translates to: APFSMITPACVK*THKTSQSRPLI
Trigger: TATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CAA 72 bp AGAGAAGTAATATCTGAGTCAAAGTCTCTGGGCTCTTaGCCTCTCAGAGTGCACCCATTGCACTCACCAAAA +
Preference number: 4 (lower is better)
Translates to: REVISESKSLGS*PLRVHPLHSPK
Trigger: TTTTGGTGAGTGCAATGGGTGCACTCTGAGAGGCAAAGAGCCCAGAGACTTTGACTCAGATATTACTTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
CDS-3UTR GCA 90 bp ACTGGCTTGCTTCCCCTGGCTTGCTCAGACTGCTCTCTTATAGAACCCAAGACTCGCAAAAACATATTCTaGTATATGGCTTGTATCTTC +
Preference number: 4 (lower is better)
Translates to: TGLLPLACSDCSLIEPKTRKNIF*YMACIF
Trigger: GAAGATACAAGCCATATAGCAGAATATGTTTTTGCG...AGTCTTGGGTTCTATAAGAGAGCAGTCTGAGCAAGCCAGGGGAAGCAAGCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR GCA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATATGTTCTCCTCATTGGTaGTTCTCCCAAGTTGGCCCT +
Preference number: 4 (lower is better)
Translates to: RSSVTQYKSGDILLIVRICSPHW*FSQVGP
Trigger: AGGGCCAACTTGGGAGAAGCACCAATGAGGAGAACA...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR CCA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTACTGAAGCTGGACTCTaGTCCCAAGAATCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFTEAGL*SQESGQ
Trigger: TTGACCAGATTCTTGGGACCAGAGTCCAGCTTCAGT...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCGCAAAACAAATTCCATaGCTGATCATCTCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: PACVKLTHKTSQSRPLILAKQIP*LIISLV
Trigger: TACCAAGGAGATGATCAGCCATGGAATTTGTTTTGC...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTCAGTGTTCTCCTCATTaGTGCTTCTCCCAAGTTGGC +
Preference number: 4 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCQCSPH*CFSQVG
Trigger: GCCAACTTGGGAGAAGCACCAATGAGGAGAACACTG...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR TCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTGTTCCTGGAATAAAATaGGAACAACTAGGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIVPGIK*EQLGER
Trigger: TCTCTCCCCTAGTTGTTCTCATTTTATTCCAGGAAC...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTATCCCAGGGACTTGTTaGATAGAATATTTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIIPGTC*IEYLGP
Trigger: AGGACCCAAATATTCTATTCAACAAGTCCCTGGGAT...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTCAAAAGGAGCATAGCTaGTCTGTGGGACGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCQKEHS*SVGRCR
Trigger: TCTACAACGTCCCACAGATCAGCTATGCTCCTTTTG...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTGTCAAGCTTGATTGCTaGAACTTCCTTGTTCACAGT +
Preference number: 4 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIVKLDC*NFLVHS
Trigger: ACTGTGAACAAGGAAGTTTCAGCAATCAAGCTTGAC...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR CCA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATAACTGAAGCTGGACTCTaGTCCCAAGAATCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: RSSVTQYKSGDILLIVRITEAGL*SQESGQ
Trigger: TTGACCAGATTCTTGGGACCAGAGTCCAGCTTCAGT...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTGTGCTTCTCCCAAGTTaGCCCTTTTGTAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCVLLPS*PFCRNG
Trigger: TCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCAC...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCACATATTCTGCTATATaGCTTGTATCTTCAACGCCA +
Preference number: 4 (lower is better)
Translates to: FLHDNSSLCQVDTQNQPVTYSAI*LVSSTP
Trigger: TGGCGTTGAAGATACAAGCCATATAGCAGAATATGT...GACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTCTCGGGAGATCTGAATaGATATTGATGTTGAAATGC +
Preference number: 4 (lower is better)
Translates to: CRVADLFSSLDTFSSSSILGRSE*ILMLKC
Trigger: GCATTTCAACATCAATATCCATTCAGATCTCCCGAG...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TGCAGGGTTGCAGATCTCTTTAGCTCCTTAGATACTTTCTCTAGCTCCTCCATTGCAAAACAAATTCCATaGCTGATCATCTCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: CRVADLFSSLDTFSSSSIAKQIP*LIISLV
Trigger: TACCAAGGAGATGATCAGCCATGGAATTTGTTTTGC...AATGGAGGAGCTAGAGAAAGTATCTAAGGAGCTAAAGAGATCTGCAACCCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGAT +
Preference number: 4 (lower is better)
Translates to: CPYLQMTLFSESQILTFHHGRGA*SKHLLD
Trigger: ATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATG...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CAA 72 bp AAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTaGATCACCAAAGATGCAGGGCTGGAACTCAAGCAG +
Preference number: 4 (lower is better)
Translates to: KGFIQFTLSTLL*ITKDAGLELKQ
Trigger: CTGCTTGAGTTCCAGCCCTGCATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
3UTR CAA 72 bp TCACCAAAAACTGTGGGCTATCTCCAGAAATCTTACTaGCTTGCCATAGTATTTCCTAGATGGCTTCTGTCA +
Preference number: 4 (lower is better)
Translates to: SPKTVGYLQKSY*LAIVFPRWLLS
Trigger: TGACAGAAGCCATCTAGGAAATACTATGGCAAGCAAGTAAGATTTCTGGAGATAGCCCACAGTTTTTGGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232707.2
CDS-3UTR TCA 90 bp TACTGGTTAGTTCATAATGTTGTTGTACCTGCAGGGTTGCAGATCTCTTTAGCTATCCCAGGGACTTGTTaGATAGAATATTTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: YWLVHNVVVPAGLQISLAIPGTC*IEYLGP
Trigger: AGGACCCAAATATTCTATTCAACAAGTCCCTGGGAT...AGCTAAAGAGATCTGCAACCCTGCAGGTACAACAACATTATGAACTAACCAGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATCACCAGAGAATGATTTaGCCAAACTCTGAGTGCATG +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYHQRMI*PNSECM
Trigger: CATGCACTCAGAGTTTGGTCAAATCATTCTCTGGTG...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTCTCGGGAGATCTGAATaGATATTGATGTTGAAATGC +
Preference number: 4 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCLGRSE*ILMLKC
Trigger: GCATTTCAACATCAATATCCATTCAGATCTCCCGAG...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGAT +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYHGRGA*SKHLLD
Trigger: ATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATG...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACAGTGCTTCTCCCAAGTTaGCCCTTTTGTAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTVLLPS*PFCRNG
Trigger: TCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCAC...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTATCAAAACAACAGAATaGTTTCCCCTCAACAGCTGT +
Preference number: 4 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVIKTTE*FPLNSC
Trigger: ACAGCTGTTGAGGGGAAACCATTCTGTTGTTTTGAT...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATGTGACTGTTCTAGGTTaGCCAATGAACATTAGTGAG +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYVTVLG*PMNISE
Trigger: CTCACTAATGTTCATTGGCCAACCTAGAACAGTCAC...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACAAACCACAGCAGACTATaGCATTTGAGAGTCGGGTCA +
Preference number: 4 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTNHSRL*HLRVGS
Trigger: TGACCCGACTCTCAAATGCCATAGTCTGCTGTGGTT...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACAGGATCACATAGCATTTaGGAAGAAATATACATCCCA +
Preference number: 4 (lower is better)
Translates to: SFKVKALKTLKREGNLATGSHSI*EEIYIP
Trigger: TGGGATGTATATTTCTTCCCAAATGCTATGTGATCC...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
3UTR CAA 72 bp TTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTaGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCC +
Preference number: 4 (lower is better)
Translates to: FYSCTNIMTKKQ*GRKGFIQFTLS
Trigger: GGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR GCA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTTCCAATAACAAAATCTaGATCTTGATAGTAGCCAGA +
Preference number: 4 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFSNNKI*ILIVAR
Trigger: TCTGGCTACTATCAAGATGCAGATTTTGTTATTGGA...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR GCA 90 bp TGGGAAGAAATATACATCCCAGTAAGCCAGCACTGGAGGCTAGAATTGAAAGAATCCAATAACAAAATCTaGATCTTGATAGTAGCCAGA +
Preference number: 4 (lower is better)
Translates to: WEEIYIPVSQHWRLELKESNNKI*ILIVAR
Trigger: TCTGGCTACTATCAAGATGCAGATTTTGTTATTGGA...TTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR GCA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACACGCAAAAACATATTCTaGTATATGGCTTGTATCTTC +
Preference number: 4 (lower is better)
Translates to: SFKVKALKTLKREGNLATRKNIF*YMACIF
Trigger: GAAGATACAAGCCATATAGCAGAATATGTTTTTGCG...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATGCAAAACAAATTCCATaGCTGATCATCTCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYAKQIP*LIISLV
Trigger: TACCAAGGAGATGATCAGCCATGGAATTTGTTTTGC...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCGGAGTAAACATTTATTaGATGAGTCTCCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCGVNIY*MSLLPL
Trigger: GAGTGGAAGGAGACTCATCCAATAAATGTTTACTCC...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATTTCTCCATCTGGACATaGGACACAATCAAAACAACA +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYFSIWT*DTIKTT
Trigger: TGTTGTTTTGATTGTGTCCCATGTCCAGATGGAGAA...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR TCA 90 bp GGCCAAAAATACCATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTGGATAGTTCCTGGAATAAAATaGGAACAACTAGGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: GQKYHNFRETLIPLFIWIVPGIK*EQLGER
Trigger: TCTCTCCCCTAGTTGTTCTCATTTTATTCCAGGAAC...TATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGTATTTTTGGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR TCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACAGTCAAGCTTGATTGCTaGAACTTCCTTGTTCACAGT +
Preference number: 4 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTVKLDC*NFLVHS
Trigger: ACTGTGAACAAGGAAGTTTCAGCAATCAAGCTTGAC...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR CCA 90 bp CACAAAACCAGCCAGTCAAGACCTCTTATACTCATGTATTGGAGGAAATACTATACATATTCTGCTATATaGCTTGTATCTTCAACGCCA +
Preference number: 4 (lower is better)
Translates to: HKTSQSRPLILMYWRKYYTYSAI*LVSSTP
Trigger: TGGCGTTGAAGATACAAGCCATATAGCAGAATATGT...ATAGTATTTCCTCCAATACATGAGTATAAGAGGTCTTGACTGGCTGGTTTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCACATATTCTGCTATATaGCTTGTATCTTCAACGCCA +
Preference number: 4 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCTYSAI*LVSSTP
Trigger: TGGCGTTGAAGATACAAGCCATATAGCAGAATATGT...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp TACTGGTTAGTTCATAATGTTGTTGTACCTGCAGGGTTGCAGATCTCTTTAGCTATTCCTCTGTTTATTTaGATACTGATCTTCAGGACA +
Preference number: 4 (lower is better)
Translates to: YWLVHNVVVPAGLQISLAIPLFI*ILIFRT
Trigger: TGTCCTGAAGATCAGTATCCAAATAAACAGAGGAAT...AGCTAAAGAGATCTGCAACCCTGCAGGTACAACAACATTATGAACTAACCAGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CCA 90 bp GGCCAAAAATACCATAATTTTAGGGAGACACTGATTCCTCTGTTTATTTGGATAACTCCCAGGCAAATGTaGAAACCAGAAGAATCCTAT +
Preference number: 4 (lower is better)
Translates to: GQKYHNFRETLIPLFIWITPRQM*KPEESY
Trigger: ATAGGATTCTTCTGGTTTCCACATTTGCCTGGGAGT...TATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGTATTTTTGGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATGGAGTAAACATTTATTaGATGAGTCTCCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDGVNIY*MSLLPL
Trigger: GAGTGGAAGGAGACTCATCCAATAAATGTTTACTCC...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CCA 90 bp AAGAATGGACATAACTATTTAAGACCGAGCAAAGAATTCAGCACAAAGCTTACACCCAGTGGATCTTCATaGGCCAAAAATACCATAATT +
Preference number: 4 (lower is better)
Translates to: KNGHNYLRPSKEFSTKLTPSGSS*AKNTII
Trigger: AATTATGGTATTTTTGGCCCATGAAGATCCACTGGG...TGTAAGCTTTGTGCTGAATTCTTTGCTCGGTCTTAAATAGTTATGTCCATTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR GCA 90 bp AGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTGATCACCAAAGATGAGATTTCTGTTATTTaGTCTGACAATGGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: RKGFIQFTLSTLLLITKDEISVI*SDNGCF
Trigger: GAAACACCCATTGTCAGAGCAAATAACAGAAATCTC...ATCTTTGGTGATCAACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS TCA 90 bp GAGGAGCCTGGAGTAAACATTTATTGGATGAGTCTCCTTCCACTCTaGGTGACAGCTCCTCATGGAGTGCCTGGGCAATGGCATACACAG +
Preference number: 5 (lower is better)
Translates to: EEPGVNIYWMSLLPL*VTAPHGVPGQWHTQ
Trigger: CTGTGTATGCCATTGCCCAGGCACTCCATGAGGAGCTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS GCA 90 bp AGCTATAGGGTGAGGTATTCATATCCCAAGCATGCAGAGGTCGTGTaGTCAGGCTGCCATTTGGCTCACATTGACTTAGATCCCAGAGTC +
Preference number: 5 (lower is better)
Translates to: SYRVRYSYPKHAEVV*SGCHLAHIDLDPRV
Trigger: GACTCTGGGATCTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGCTTGGGATATGAATACCTCACCCTATAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CCA 90 bp TGGCCCTTTTGTAGGAATGGATGGAGCTTCCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGATGAGTCTCCTTCCACTCTGAGTGAC +
Preference number: 5 (lower is better)
Translates to: WPFCRNGWSFHGRGA*SKHLLDESPSTLSD
Trigger: GTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGCTCCATCCATTCCTACAAAAGGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS CCA 90 bp AACCAGAAGAATCCTATTTCTGGATCCTTCCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGATGAGTCTCCTTCCACTCTGAGTGAC +
Preference number: 5 (lower is better)
Translates to: NQKNPISGSFHGRGA*SKHLLDESPSTLSD
Trigger: GTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGGATCCAGAAATAGGATTCTTCTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp CCCCAGAACAGTAATGTGGGGTTACAACAGCACAGCAGCCAGTCTGGTAAGTTTAAGAATCCCAGGGACTaGTTGAATAGAATATTTGGG +
Preference number: 5 (lower is better)
Translates to: PQNSNVGLQQHSSQSGKFKNPRD*LNRIFG
Trigger: CCCAAATATTCTATTCAACAAGTCCCTGGGATTCTT...AAACTTACCAGACTGGCTGCTGTGCTGTTGTAACCCCACATTACTGTTCTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp GACGCTCCTTTCTCCATGATAACTCCAGCCTGTGTCAAGTTGACACACAAAACCATTGCTGAAACTTCCTaGTTCACAGTGTTCTCCTCA +
Preference number: 5 (lower is better)
Translates to: DAPFSMITPACVKLTHKTIAETS*FTVFSS
Trigger: TGAGGAGAACACTGTGAACAAGGAAGTTTCAGCAAT...GGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCATGGAGAAAGGAGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR CAA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCCCCTCAACAGCTGTTTaGCTAAATCCAAATGGACAA +
Preference number: 5 (lower is better)
Translates to: PACVKLTHKTSQSRPLILPSTAV*LNPNGQ
Trigger: TTGTCCATTTGGATTTAGCAAAACAGCTGTTGAGGG...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS GCA 90 bp AGAGACTTAGAACTCGGGAGATCTGAATGGATATTGATGTTGAAATaGCTCCTATCACTGCAACCAGCTTATCAGTCTTTTCAGGCCTGC +
Preference number: 5 (lower is better)
Translates to: RDLELGRSEWILMLK*LLSLQPAYQSFQAC
Trigger: GCAGGCCTGAAAAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTCTAAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp CCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTCAAGACCTCTTATACTCCCATATCTGTTTTATTaGCAATTTCTCCATCTGGAC +
Preference number: 5 (lower is better)
Translates to: PACVKLTHKTSQSRPLILPYLFY*QFLHLD
Trigger: GTCCAGATGGAGAAATTGCAAATAAAACAGATATGG...GAGTATAAGAGGTCTTGACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CAA 90 bp TTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGTTTATTGCTGAAACTTCCTaGTTCACAGTGTTCTCCTCA +
Preference number: 5 (lower is better)
Translates to: FLFLHKHHDQEAVGEERFIAETS*FTVFSS
Trigger: TGAGGAGAACACTGTGAACAAGGAAGTTTCAGCAAT...AAACCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS-3UTR CAA 90 bp TGTCCTTATTTGCAGATGACTTTATTCTCTGAGAGCCAGATCCTAACCTTCCACTGGAGTAAACATTTATaGGATGAGTCTCCTTCCACT +
Preference number: 5 (lower is better)
Translates to: CPYLQMTLFSESQILTFHWSKHL*DESPST
Trigger: AGTGGAAGGAGACTCATCCAATAAATGTTTACTCCA...GTGGAAGGTTAGGATCTGGCTCTCAGAGAATAAAGTCATCTGCAAATAAGGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp TCCTTCAAGGTAAAAGCTCTGAAGACACTCAAAAGAGAGGGAAATCTTGCCACAGATTCCTCTGTTTATTaGGATACTGATCTTCAGGAC +
Preference number: 5 (lower is better)
Translates to: SFKVKALKTLKREGNLATDSSVY*DTDLQD
Trigger: GTCCTGAAGATCAGTATCCAAATAAACAGAGGAATC...TGTGGCAAGATTTCCCTCTCTTTTGAGTGTCTTCAGAGCTTTTACCTTGAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CAA 90 bp ACTCCTAAAGCAGGCTTAAGAAAGGTAGTGAGTCAGAGAATTCATAAAGTTTGCCCTGGTTTGATGGCTTaGAAAGCCATAACCACAATG +
Preference number: 5 (lower is better)
Translates to: TPKAGLRKVVSQRIHKVCPGLMA*KAITTM
Trigger: CATTGTGGTTATGGCTTTCAAAGCCATCAAACCAGG...GCAAACTTTATGAATTCTCTGACTCACTACCTTTCTTAAGCCTGCTTTAGGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CAA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTAAGATGCTTCCTGGTTaGATGGCTTTGAAAGCCATA +
Preference number: 5 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCKMLPG*MALKAI
Trigger: TATGGCTTTCAAAGCCATCAAACCAGGAAGCATCTT...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032238.5
CDS-3UTR CAA 90 bp AGAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTAAGAATCCCAGGGACTaGTTGAATAGAATATTTGGG +
Preference number: 5 (lower is better)
Translates to: RSSWGGKVLFSLHFPHCCKNPRD*LNRIFG
Trigger: CCCAAATATTCTATTCAACAAGTCCCTGGGATTCTT...ACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp GAAGCAGTTGGGGAGGAAAGGTTTTATTCAGTTTACACTTTCCACATTGCTGTTAAGAATCCCAGGGACTaGTTGAATAGAATATTTGGG +
Preference number: 5 (lower is better)
Translates to: EAVGEERFYSVYTFHIAVKNPRD*LNRIFG
Trigger: CCCAAATATTCTATTCAACAAGTCCCTGGGATTCTT...AACAGCAATGTGGAAAGTGTAAACTGAATAAAACCTTTCCTCCCCAACTGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS-3UTR CAA 90 bp AGGAGCAGTGTAACCCAATACAAATCCGGTGACATCCTTCTCATTGTTAGAATATGGAGTAAACATTTATaGGATGAGTCTCCTTCCACT +
Preference number: 5 (lower is better)
Translates to: RSSVTQYKSGDILLIVRIWSKHL*DESPST
Trigger: AGTGGAAGGAGACTCATCCAATAAATGTTTACTCCA...TATTCTAACAATGAGAAGGATGTCACCGGATTTGTATTGGGTTACACTGCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CCA 72 bp GTGCTTCTCCCAAGTTGGCCCTTTTGTAGGAATGGATaGAGCTTCCATGGGAGAGGAGCCTGGAGTAAACAT +
Preference number: 6 (lower is better)
Translates to: VLLPSWPFCRNG*SFHGRGAWSKH
Trigger: ATGTTTACTCCAGGCTCCTCTCCCATGGAAGCTCCATCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS TCA 72 bp GGAGTAAACATTTATTGGATGAGTCTCCTTCCACTCTaGGTGACAGCTCCTCATGGAGTGCCTGGGCAATGG +
Preference number: 6 (lower is better)
Translates to: GVNIYWMSLLPL*VTAPHGVPGQW
Trigger: CCATTGCCCAGGCACTCCATGAGGAGCTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CCA 72 bp TTCACAGTGTTCTCCTCATTGGTGCTTCTCCCAAGTTaGCCCTTTTGTAGGAATGGATGGAGCTTCCATGGG +
Preference number: 6 (lower is better)
Translates to: FTVFSSLVLLPS*PFCRNGWSFHG
Trigger: CCCATGGAAGCTCCATCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCACCAATGAGGAGAACACTGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS CCA 72 bp GTGCTTCTCCCAAGTTGGCCCTTTTGTAGGAATGGATaGAGCAGTGATCTCACATGTGACAGCACTTCTGTG +
Preference number: 6 (lower is better)
Translates to: VLLPSWPFCRNG*SSDLTCDSTSV
Trigger: CACAGAAGTGCTGTCACATGTGAGATCACTGCTCCATCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS CAA 72 bp AGCTTCCATGGGAGAGGAGCCTGGAGTAAACATTTATaGGATGAGTCTCCTTCCACTCTGAGTGACAGCTCC +
Preference number: 6 (lower is better)
Translates to: SFHGRGAWSKHL*DESPSTLSDSS
Trigger: GGAGCTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS CAA 72 bp TCCTTCCATGGGAGAGGAGCCTGGAGTAAACATTTATaGGATGAGTCTCCTTCCACTCTGAGTGACAGCTCC +
Preference number: 6 (lower is better)
Translates to: SFHGRGAWSKHL*DESPSTLSDSS
Trigger: GGAGCTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS GCA 72 bp GTGAGGTATTCATATCCCAAGCATGCAGAGGTCGTGTaGTCAGGCTGCCATTTGGCTCACATTGACTTAGAT +
Preference number: 6 (lower is better)
Translates to: VRYSYPKHAEVV*SGCHLAHIDLD
Trigger: ATCTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGCTTGGGATATGAATACCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CAA 90 bp ATTTCTGGATCCTTCCATGGGAGAGGAGCCTGGAGTAAACATTTATaGGATGAGTCTCCTTCCACTCTGAGTGACAGCTCCTCATGGAGT +
Preference number: 6 (lower is better)
Translates to: ISGSFHGRGAWSKHL*DESPSTLSDSSSWS
Trigger: ACTCCATGAGGAGCTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGGATCCAGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS CAA 90 bp ATAACAGCAGTTGGACAATTCCCTGATACAGAGCTGCGGTGTGCATaGAAAACTGATAAGGAGACTGAAGCTGGACTCTGGTCCCAAGAA +
Preference number: 6 (lower is better)
Translates to: ITAVGQFPDTELRCA*KTDKETEAGLWSQE
Trigger: TTCTTGGGACCAGAGTCCAGCTTCAGTCTCCTTATCAGTTTTCAATGCACACCGCAGCTCTGTATCAGGGAATTGTCCAACTGCTGTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS TCA 72 bp TTGGACAATTCCCTGATACAGAGCTGCGGTGTGCATTaGAAACTGATAAGGAGACTGAAGCTGGACTCTGGT +
Preference number: 6 (lower is better)
Translates to: LDNSLIQSCGVH*KLIRRLKLDSG
Trigger: ACCAGAGTCCAGCTTCAGTCTCCTTATCAGTTTTCAATGCACACCGCAGCTCTGTATCAGGGAATTGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS TCA 72 bp GGCATACACAGCAGCATAGACTTTGTAGCTATAGGGTaGGGTATTCATATCCCAAGCATGCAGAGGTCGTGT +
Preference number: 6 (lower is better)
Translates to: GIHSSIDFVAIG*GIHIPSMQRSC
Trigger: ACACGACCTCTGCATGCTTGGGATATGAATACCTCACCCTATAGCTACAAAGTCTATGCTGCTGTGTATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS TCA 72 bp GGGCATAATTTGGATATGGAGAGGTATGGCAAAGGGTaGACTCCCAGGCAAATGTGGAAACCAGAAGAATCC +
Preference number: 6 (lower is better)
Translates to: GHNLDMERYGKG*TPRQMWKPEES
Trigger: GGATTCTTCTGGTTTCCACATTTGCCTGGGAGTTCACCCTTTGCCATACCTCTCCATATCCAAATTATGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS TCA 72 bp GATGGAGCAGTGATCTCACATGTGACAGCACTTCTGTaGCAACAGCTCTCTCTGGGCATAATTTGGATATGG +
Preference number: 6 (lower is better)
Translates to: DGAVISHVTALL*QQLSLGIIWIW
Trigger: CCATATCCAAATTATGCCCAGAGAGAGCTGTTGTCACAGAAGTGCTGTCACATGTGAGATCACTGCTCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233955.2
CDS CCA 72 bp TGTAGGAATGGATGGAGCTTCCATGGGAGAGGAGCCTaGAGTAAACATTTATTGGATGAGTCTCCTTCCACT +
Preference number: 6 (lower is better)
Translates to: CRNGWSFHGRGA*SKHLLDESPST
Trigger: AGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGCTCCATCCATTCCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS GCA 72 bp CTGAAACTTCCTTGTTCACAGTGTTCTCCTCATTGGTaGTTCTCCCAAGTTGGCCCTTTTGTAGGAATGGAT +
Preference number: 6 (lower is better)
Translates to: LKLPCSQCSPHW*FSQVGPFVGMD
Trigger: ATCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCACCAATGAGGAGAACACTGTGAACAAGGAAGTTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
CDS CAA 72 bp GCCATAGAACCTTCCGCAGCCTTCATCTCAATGAAGTaGACATTGAAGAGAAAGAATCCCAGGGACTTGTTG +
Preference number: 6 (lower is better)
Translates to: AIEPSAAFISMK*TLKRKNPRDLL
Trigger: CAACAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGATGAAGGCTGCGGAAGGTTCTATGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS TCA 72 bp TATCATCTGGAACCACTAGGCCAACCCAGATCCAAGTaGAGTATAACAGCAGTTGGACAATTCCCTGATACA +
Preference number: 6 (lower is better)
Translates to: YHLEPLGQPRSK*SITAVGQFPDT
Trigger: TGTATCAGGGAATTGTCCAACTGCTGTTATACTTCACTTGGATCTGGGTTGGCCTAGTGGTTCCAGATGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CCA 72 bp GGACGTTGTAGAGACTTAGAACTCGGGAGATCTGAATaGATATTGATGTTGAAATGCCTCCTATCACTGCAA +
Preference number: 6 (lower is better)
Translates to: GRCRDLELGRSE*ILMLKCLLSLQ
Trigger: TTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTCTAAGTCTCTACAACGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CAA 90 bp GAGAGCAAAGCCATAGAACCTTCCGCAGCCTTCATCTCAATGAAGTaGACATTGAAGAGAAAGAATCCCAGGGACTTGTTGAATAGAATA +
Preference number: 6 (lower is better)
Translates to: ESKAIEPSAAFISMK*TLKRKNPRDLLNRI
Trigger: TATTCTATTCAACAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGATGAAGGCTGCGGAAGGTTCTATGGCTTTGCTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS CAA 90 bp CGTTGTAGAGACTTAGAACTCGGGAGATCTGAATGGATATTGATGTaGAAATGCCTCCTATCACTGCAACCAGCTTATCAGTCTTTTCAG +
Preference number: 6 (lower is better)
Translates to: RCRDLELGRSEWILM*KCLLSLQPAYQSFQ
Trigger: CTGAAAAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTCTAAGTCTCTACAACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS GCA 72 bp GAACTCGGGAGATCTGAATGGATATTGATGTTGAAATaGCTCCTATCACTGCAACCAGCTTATCAGTCTTTT +
Preference number: 6 (lower is better)
Translates to: ELGRSEWILMLK*LLSLQPAYQSF
Trigger: AAAAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS GCA 72 bp CACTCTAAGGGAAAAGAGTCCTCCAATAACAAAATCTaGATCTTGATAGTAGCCAGAAGAAGCATATTTAGT +
Preference number: 6 (lower is better)
Translates to: HSKGKESSNNKI*ILIVARRSIFS
Trigger: ACTAAATATGCTTCTTCTGGCTACTATCAAGATGCAGATTTTGTTATTGGAGGACTCTTTTCCCTTAGAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2
CDS TCA 72 bp CTGAGAAAATCCTTGAATCCCAGAATTTCATCCATGTaGAATGAAAATGATAATCCTCCACCAAAGTGTGTA +
Preference number: 6 (lower is better)
Translates to: LRKSLNPRISSM*NENDNPPPKCV
Trigger: TACACACTTTGGTGGAGGATTATCATTTTCATTTCACATGGATGAAATTCTGGGATTCAAGGATTTTCTCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032238.5
ENSMUST00000232707.2
ENSMUST00000233955.2