RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091635

Ensembl transcript IDs: ENSMUST00000053253.10

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCGAAAAATCTCCCCAGCAACCACAGTCGGGACCAATCCGGAGTTaGTGCACTTTCATTAGACTCCTTCCTTGTTTCCCTCCCATACCC +
Preference number: 1 (lower is better)
Translates to: VEKSPQQPQSGPIRS*CTFIRLLPCFPPIP
Trigger: GGGTATGGGAGGGAAACAAGGAAGGAGTCTAATGAAAGTGCAGCAACTCCGGATTGGTCCCGACTGTGGTTGCTGGGGAGATTTTTCGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 90 bp GAAAAATCTCCCCAGCAACCACAGTCGGGACCAATCCGGAGTTGCTaGACTTTCATTAGACTCCTTCCTTGTTTCCCTCCCATACCCATT +
Preference number: 1 (lower is better)
Translates to: EKSPQQPQSGPIRSC*TFIRLLPCFPPIPI
Trigger: AATGGGTATGGGAGGGAAACAAGGAAGGAGTCTAATGAAAGTGCAGCAACTCCGGATTGGTCCCGACTGTGGTTGCTGGGGAGATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CCA 90 bp AGACTCCTCTACCCCTGTGTAGGATATGAGTCATCTCCAGAGCTCTaGCTTTCCCTGAATAAAGCCTCATGTGGTTTGCATCAAGCTTTG +
Preference number: 1 (lower is better)
Translates to: RLLYPCVGYESSPEL*LSLNKASCGLHQAL
Trigger: CAAAGCTTGATGCAAACCACATGAGGCTTTATTCAGGGAAAGCCAGAGCTCTGGAGATGACTCATATCCTACACAGGGGTAGAGGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 90 bp GAAGGATCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTaGAAAGCTTCTAGCCTACACAACCATTTACAGAAAACTTTAAAT +
Preference number: 1 (lower is better)
Translates to: EGSLHSAWQHGSKQA*KASSLHNHLQKTLN
Trigger: ATTTAAAGTTTTCTGTAAATGGTTGTGTAGGCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGATCCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CCA 90 bp GAAGTCAAGACAAGAACTTGGATGCAGACATTCAATGAGAGAACATaGAATAATGCTGATTACTGGCTTCATGTCCATGCTCTCTACAGT +
Preference number: 1 (lower is better)
Translates to: EVKTRTWMQTFNERT*NNADYWLHVHALYS
Trigger: ACTGTAGAGAGCATGGACATGAAGCCAGTAATCAGCATTATTCCATGTTCTCTCATTGAATGTCTGCATCCAAGTTCTTGTCTTGACTTC
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 90 bp AAGCTATTACAAAATCTCAGGCCTCTGAGAGGGCCATCAACAATATaGAACACTGTAACTATGCTCCACACTCTCCTAATATTCAATCTT +
Preference number: 1 (lower is better)
Translates to: KLLQNLRPLRGPSTI*NTVTMLHTLLIFNL
Trigger: AAGATTGAATATTAGGAGAGTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTGAGATTTTGTAATAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 90 bp GTGTTTTCACATAAAGTTCAAGAGCATTATACAGCAGGCACAATCTaGATCCCACAGATTGTACTCTTCTTACTATTTTACCTGATATTC +
Preference number: 1 (lower is better)
Translates to: VFSHKVQEHYTAGTI*IPQIVLFLLFYLIF
Trigger: GAATATCAGGTAAAATAGTAAGAAGAGTACAATCTGTGGGATTCAGATTGTGCCTGCTGTATAATGCTCTTGAACTTTATGTGAAAACAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR-3UTR TCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTATCCTGAGGCCTGAGTaGGGGGCTCCTCTCAGAGTC +
Preference number: 2 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGILRPE*GAPLRV
Trigger: GACTCTGAGAGGAGCCCCTCACTCAGGCCTCAGGAT...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR-3UTR CCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTCAATTTGCCCAGAGATaGCACTGTCACAGCAGTAGG +
Preference number: 2 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGQFAQR*HCHSSR
Trigger: CCTACTGCTGTGACAGTGCCATCTCTGGGCAAATTG...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CAA 90 bp CTCTGGCTTTCCCTGAATAAAGCCTCATGTGGTTTGCATCAAGCTTaGTCTCTCGTGAGTTCTTGGGTGTTTGCTATTATCCTGAGGCCT +
Preference number: 2 (lower is better)
Translates to: LWLSLNKASCGLHQA*SLVSSWVFAIILRP
Trigger: AGGCCTCAGGATAATAGCAAACACCCAAGAACTCACGAGAGACAAAGCTTGATGCAAACCACATGAGGCTTTATTCAGGGAAAGCCAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR-3UTR TCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTAGCATAGGTAGACCATaGAGTTTTACCAATAGACCC +
Preference number: 2 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGSIGRP*SFTNRP
Trigger: GGGTCTATTGGTAAAACTTCATGGTCTACCTATGCT...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR-3UTR TCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTGTCAAAAGAACCATATaGGAAAAGTCCTATTTCCCT +
Preference number: 2 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGVKRTI*EKSYFP
Trigger: AGGGAAATAGGACTTTTCTCATATGGTTCTTTTGAC...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR-3UTR CCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTCTAAAACTTAGTAATTaGCATTCCATTAGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGLKLSN*HSIRQC
Trigger: GCACTGCCTAATGGAATGCCAATTACTAAGTTTTAG...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp CCCCAGCAACCACAGTCGGGACCAATCCGGAGTTGCTaGACTTTCATTAGACTCCTTCCTTGTTTCCCTCCC +
Preference number: 3 (lower is better)
Translates to: PQQPQSGPIRSC*TFIRLLPCFPP
Trigger: GGGAGGGAAACAAGGAAGGAGTCTAATGAAAGTGCAGCAACTCCGGATTGGTCCCGACTGTGGTTGCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp TGGCCGCTCCTCAAACCTGTGTGTCTGCCAATGTTCTaGACAGGTGTGTGCCCATTGCTGCATCATACTGGC +
Preference number: 3 (lower is better)
Translates to: WPLLKPVCLPMF*TGVCPLLHHTG
Trigger: GCCAGTATGATGCAGCAATGGGCACACACCTGTTCAGAACATTGGCAGACACACAGGTTTGAGGAGCGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp GCACAATGCTATGGCCGCTCCTCAAACCTGTGTGTCTaGCAATGTTCTGAACAGGTGTGTGCCCATTGCTGC +
Preference number: 3 (lower is better)
Translates to: AQCYGRSSNLCV*QCSEQVCAHCC
Trigger: GCAGCAATGGGCACACACCTGTTCAGAACATTGGCAGACACACAGGTTTGAGGAGCGGCCATAGCATTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp TCTCCCCAGCAACCACAGTCGGGACCAATCCGGAGTTaGTGCACTTTCATTAGACTCCTTCCTTGTTTCCCT +
Preference number: 3 (lower is better)
Translates to: SPQQPQSGPIRS*CTFIRLLPCFP
Trigger: AGGGAAACAAGGAAGGAGTCTAATGAAAGTGCAGCAACTCCGGATTGGTCCCGACTGTGGTTGCTGGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp AGTTCTTGGGTGTTTGCTATTATCCTGAGGCCTGAGTaGGGGGCTCCTCTCAGAGTCTTTCAGCACTTCACT +
Preference number: 3 (lower is better)
Translates to: SSWVFAIILRPE*GAPLRVFQHFT
Trigger: AGTGAAGTGCTGAAAGACTCTGAGAGGAGCCCCTCACTCAGGCCTCAGGATAATAGCAAACACCCAAGAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp ATCCCAGCACTCAGGAGGGAAAAGGCAGTGGATTTCTaGGTTCAAGGTCAGCGTGGTCTACAAAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: IPALRREKAVDF*VQGQRGLQSEF
Trigger: GAACTCACTTTGTAGACCACGCTGACCTTGAACTCAGAAATCCACTGCCTTTTCCCTCCTGAGTGCTGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp GTCTGCCAATGTTCTGAACAGGTGTGTGCCCATTGCTaGATCATACTGGCAGGTGTTTGTGATATTGGTTGT +
Preference number: 3 (lower is better)
Translates to: VCQCSEQVCAHC*IILAGVCDIGC
Trigger: ACAACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTCAGAACATTGGCAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp TGTGTCTGCCAATGTTCTGAACAGGTGTGTGCCCATTaGTGCATCATACTGGCAGGTGTTTGTGATATTGGT +
Preference number: 3 (lower is better)
Translates to: CVCQCSEQVCAH*CIILAGVCDIG
Trigger: ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTCAGAACATTGGCAGACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR GCA 72 bp CTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTaGAAAGCTTCTAGCCTACACAACCATTTACAGAAA +
Preference number: 3 (lower is better)
Translates to: LHSAWQHGSKQA*KASSLHNHLQK
Trigger: TTTCTGTAAATGGTTGTGTAGGCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp CATGAAGTTTTACCAATAGACCCACAAAATATGACCTaGAGAAGGATCACTGCACTCTGCATGGCAGCATGG +
Preference number: 3 (lower is better)
Translates to: HEVLPIDPQNMT*RRITALCMAAW
Trigger: CCATGCTGCCATGCAGAGTGCAGTGATCCTTCTTCAGGTCATATTTTGTGGGTCTATTGGTAAAACTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp AGTCCTATTTCCCTATGTACCTTGGTCACAGTTAACTaGATGAAGTCAAGACAAGAACTTGGATGCAGACAT +
Preference number: 3 (lower is better)
Translates to: SPISLCTLVTVN*MKSRQELGCRH
Trigger: ATGTCTGCATCCAAGTTCTTGTCTTGACTTCATTCAGTTAACTGTGACCAAGGTACATAGGGAAATAGGACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CCA 72 bp ACATTCAATGAGAGAACATGGAATAATGCTGATTACTaGCTTCATGTCCATGCTCTCTACAGTCCTCTTTCT +
Preference number: 3 (lower is better)
Translates to: TFNERTWNNADY*LHVHALYSPLS
Trigger: AGAAAGAGGACTGTAGAGAGCATGGACATGAAGCCAGTAATCAGCATTATTCCATGTTCTCTCATTGAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp CTATTTCCCTATGTACCTTGGTCACAGTTAACTGAATaGAGTCAAGACAAGAACTTGGATGCAGACATTCAA +
Preference number: 3 (lower is better)
Translates to: LFPYVPWSQLTE*SQDKNLDADIQ
Trigger: TTGAATGTCTGCATCCAAGTTCTTGTCTTGACTTCATTCAGTTAACTGTGACCAAGGTACATAGGGAAATAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp CATAAAGTTCAAGAGCATTATACAGCAGGCACAATCTaGATCCCACAGATTGTACTCTTCTTACTATTTTAC +
Preference number: 3 (lower is better)
Translates to: HKVQEHYTAGTI*IPQIVLFLLFY
Trigger: GTAAAATAGTAAGAAGAGTACAATCTGTGGGATTCAGATTGTGCCTGCTGTATAATGCTCTTGAACTTTATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp TGTGATCGAGTGATAGTTATTGCCAGAGTCCTTAGTTaGAAGAAACAATGCAGTGCATACTCTTACAAAAAT +
Preference number: 3 (lower is better)
Translates to: CDRVIVIARVLS*KKQCSAYSYKN
Trigger: ATTTTTGTAAGAGTATGCACTGCATTGTTTCTTTCAACTAAGGACTCTGGCAATAACTATCACTCGATCACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR TCA 72 bp TCTCCAAATCCCAACCAAAGCACTTTAACATTTTGCTaGTGTCATAGATACTGTAGCTGTAACAAAATACTA +
Preference number: 3 (lower is better)
Translates to: SPNPNQSTLTFC*CHRYCSCNKIL
Trigger: TAGTATTTTGTTACAGCTACAGTATCTATGACATCAGCAAAATGTTAAAGTGCTTTGGTTGGGATTTGGAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp TCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCCTAGTATTAGAACTGTaGGGGCAGAGAAGGACAGGG +
Preference number: 4 (lower is better)
Translates to: SLHSAWQHGSKQACKASSLVLEL*GQRRTG
Trigger: CCCTGTCCTTCTCTGCCCTCACAGTTCTAATACTAG...GCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp TCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCATTTTGGGAGAAAGATaGACCCTAGCAAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: SLHSAWQHGSKQACKASSILGER*TLASLH
Trigger: GTGCAGGCTTGCTAGGGTGCATCTTTCTCCCAAAAT...GCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACAAGGAGACCATGCCATaGGACAAATGTGTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHKETMP*DKCVSL
Trigger: CAAGGACACACATTTGTCCCATGGCATGGTCTCCTT...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CCA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTCTGATGTTCCTCCTGTaGCCCACTCCAAATCTTCAG +
Preference number: 4 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGLMFLL*PTPNLQ
Trigger: CTGAAGATTTGGAGTGGGCCACAGGAGGAACATCAG...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACTCTCATCCTTCTCCCTaGAGTAGTGAGCTTGAAAGC +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHSHPSP*SSELES
Trigger: GCTTTCAAGCTCACTACTCCAGGGAGAAGGATGAGA...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACTTCATAAGCCAGGAATaGCACAACTCTTTGGAGGCA +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHFISQE*HNSLEA
Trigger: TGCCTCCAAAGAGTTGTGTCATTCCTGGCTTATGAA...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp TCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCAGAACACCAGCATGCTaGAGGTTAGGAATTTGGCTT +
Preference number: 4 (lower is better)
Translates to: SLHSAWQHGSKQACKASSRTPAC*RLGIWL
Trigger: AAGCCAAATTCCTAACCTTCAGCATGCTGGTGTTCT...GCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACTTCACCTATGTGGTGTaGAAAAGTAACAGTCCCATG +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHFTYVV*KSNSPM
Trigger: CATGGGACTGTTACTTTTGCACACCACATAGGTGAA...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CTTCATGTCCATGCTCTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTTGAGAAGGACAGGGCCATaGATCCTAGAGCCATCCCCA +
Preference number: 4 (lower is better)
Translates to: LHVHALYSPLSYNSQNNLRRTGP*ILEPSP
Trigger: TGGGGATGGCTCTAGGATGCATGGCCCTGTCCTTCT...CAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAGAGCATGGACATGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CTTCATGTCCATGCTCTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTTGCCAAATGTGATCTGCTaGAGGATGCAGGTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: LHVHALYSPLSYNSQNNLPNVIC*RMQVAW
Trigger: CCAGGCCACCTGCATCCTGCAGCAGATCACATTTGG...CAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAGAGCATGGACATGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CAA 72 bp CTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTaGCCCAGAGATGGCACTGTCACAGCAGTAGGGTCA +
Preference number: 4 (lower is better)
Translates to: LYSPLSYNSQNN*PRDGTVTAVGS
Trigger: TGACCCTACTGCTGTGACAGTGCCATCTCTGGGCAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CTTCATGTCCATGCTCTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTTGACTCCAAATGTGATCTaGTGCAGGATGCAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: LHVHALYSPLSYNSQNNLTPNVI*CRMQVA
Trigger: GGCCACCTGCATCCTGCAGCAGATCACATTTGGAGT...CAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAGAGCATGGACATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACCAGCTTAGGATTAAATaGTCCAAAGAAAACCCTTGG +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHQLRIK*SKENPW
Trigger: CCAAGGGTTTTCTTTGGACCATTTAATCCTAAGCTG...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CCA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATAGGATGCAGGTGGCCTaGTTGGGATGTCCAATGAAG +
Preference number: 4 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHRMQVA*LGCPMK
Trigger: CTTCATTGGACATCCCAACCAGGCCACCTGCATCCT...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACGCAAAAAGCATAGAATaGAAACACATAGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHAKSIE*KHIAPS
Trigger: TGAAGGAGCTATGTGTTTTCATTCTATGCTTTTTGC...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CAA 72 bp CCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATaGGTTGTTATATCCGTTGCTGGGAAAGAGTCGAAA +
Preference number: 4 (lower is better)
Translates to: PIAASYWQVFVI*VVISVAGKESK
Trigger: TTTCGACTCTTTCCCAGCAACGGATATAACAACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATAAGGAAGCCACCTGCTaGCAGTCAGTGAATATTCCT +
Preference number: 4 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHKEATC*QSVNIP
Trigger: AGGAATATTCACTGACTGTCAGCAGGTGGCTTCCTT...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACCAGATTCCATCTCTTTaGATTTCTTCTCTCATATCT +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHQIPSL*ISSLIS
Trigger: AGATATGAGAGAAGAAATGCAAAGAGATGGAATCTG...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACGAAAATGTCATAATCTaGACACTGATTTTCCCTATG +
Preference number: 4 (lower is better)
Translates to: QASERAINNMQHCNYAPHENVII*TLIFPM
Trigger: CATAGGGAAAATCAGTGTGCAGATTATGACATTTTC...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
3UTR CAA 72 bp TCCCTGAATAAAGCCTCATGTGGTTTGCATCAAGCTTaGTCTCTCGTGAGTTCTTGGGTGTTTGCTATTATC +
Preference number: 4 (lower is better)
Translates to: SLNKASCGLHQA*SLVSSWVFAII
Trigger: GATAATAGCAAACACCCAAGAACTCACGAGAGACAAAGCTTGATGCAAACCACATGAGGCTTTATTCAGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp ATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCCTACACAACCATTTACAGAAAATCATTTTCTGGGCACTaGACACAGTCAAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: MEVSKLAKLLAYTTIYRKSFSGH*TQSKQQ
Trigger: CTGCTGCTTTGACTGTGTTCAGTGCCCAGAAAATGA...TTTTCTGTAAATGGTTGTGTAGGCTAGAAGCTTTGCAAGCTTGCTTACTTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATGTGGAAGGCAATGACTaGGCCTTTGTTGCAAATAAT +
Preference number: 4 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHVEGND*AFVANN
Trigger: ATTATTTGCAACAAAGGCTCAGTCATTGCCTTCCAC...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR TCA 90 bp ATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCCTACACAACCATTTACAGAAAAGACAACATCCCATTGTaGGGTTGTGATCCAGATTTT +
Preference number: 4 (lower is better)
Translates to: MEVSKLAKLLAYTTIYRKDNIPL*GCDPDF
Trigger: AAAATCTGGATCACAACCTCACAATGGGATGTTGTC...TTTTCTGTAAATGGTTGTGTAGGCTAGAAGCTTTGCAAGCTTGCTTACTTCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR GCA 90 bp CTTCATGTCCATGCTCTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTTGGTCAAAGCAGCAGTCTaGTGTTTGTTTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: LHVHALYSPLSYNSQNNLVKAAV*CLFLMN
Trigger: ATTCATCAGAAACAAACAGCAGACTGCTGCTTTGAC...CAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAGAGCATGGACATGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp TCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCTTTGGGTACTGCCATTaGCTGAGATTCTACTTGTTG +
Preference number: 5 (lower is better)
Translates to: SLHSAWQHGSKQACKASSFGYCH*LRFYLL
Trigger: CAACAAGTAGAATCTCAGCAAATGGCAGTACCCAAA...GCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp CAGGCCTCTGAGAGGGCCATCAACAATATGCAACACTGTAACTATGCTCCACACGCAGCAGTCTGCTGTTaGTTTCTGATGAATTTTCCT +
Preference number: 5 (lower is better)
Translates to: QASERAINNMQHCNYAPHAAVCC*FLMNFP
Trigger: AGGAAAATTCATCAGAAACAAACAGCAGACTGCTGC...GTGTGGAGCATAGTTACAGTGTTGCATATTGTTGATGGCCCTCTCAGAGGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATATGCAGGTGGCCTGGTaGGGATGTCCAATGAAGAGC +
Preference number: 5 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHMQVAW*GCPMKS
Trigger: GCTCTTCATTGGACATCCCAACCAGGCCACCTGCAT...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 90 bp TACATGTCACACTACACATGGAGGAGGGAACTGATGTTCCTCCTGTaGCCCACTCCAAATCTTCAGATATATGAAGTTGTTGACTCTGGT +
Preference number: 5 (lower is better)
Translates to: YMSHYTWRRELMFLL*PTPNLQIYEVVDSG
Trigger: ACCAGAGTCAACAACTTCATATATCTGAAGATTTGGAGTGGGCCACAGGAGGAACATCAGTTCCCTCCTCCATGTGTAGTGTGACATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTAGGACCATGTCAAAATaGTTCCTTGCTGTCCATTCT +
Preference number: 5 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGRTMSK*FLAVHS
Trigger: AGAATGGACAGCAAGGAACAATTTTGACATGGTCCT...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 90 bp ATAAAGGGAGGAGATTTTACCAACCAGATTCCAGAGAGAACTAGTTaGATTAGGGTACAAATGGGAATGGCCAAGTTAGGTGCCCCTGAT +
Preference number: 5 (lower is better)
Translates to: IKGGDFTNQIPERTS*IRVQMGMAKLGAPD
Trigger: ATCAGGGGCACCTAACTTGGCCATTCCCATTTGTACCCTAATCCAACTAGTTCTCTCTGGAATCTGGTTGGTAAAATCTCCTCCCTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp TCACTGCACTCTGCATGGCAGCATGGAAGTAAGCAAGCTTGCAAAGCTTCTAGCTTCAGATATATGAAGTaGTTGACTCTGGTGGAAACA +
Preference number: 5 (lower is better)
Translates to: SLHSAWQHGSKQACKASSFRYMK*LTLVET
Trigger: TGTTTCCACCAGAGTCAACAACTTCATATATCTGAA...GCTAGAAGCTTTGCAAGCTTGCTTACTTCCATGCTGCCATGCAGAGTGCAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp GAACAGGTGTGTGCCCATTGCTGCATCATACTGGCAGGTGTTTGTGATATTGGTTGTCAAAATTGTTCCTaGCTGTCCATTCTAATGTGT +
Preference number: 5 (lower is better)
Translates to: EQVCAHCCIILAGVCDIGCQNCS*LSILMC
Trigger: ACACATTAGAATGGACAGCAAGGAACAATTTTGACA...ACCAATATCACAAACACCTGCCAGTATGATGCAGCAATGGGCACACACCTGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS TCA 90 bp CAGATTCCATCTCTTTGCATTTCTTCTCTCATATCTGATAGAAACTaGATACCTTGGTCATCATCTGAGATGACCAGTCCTATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: QIPSLCISSLISDRN*IPWSSSEMTSPIQV
Trigger: GACTTGGATAGGACTGGTCATCTCAGATGATGACCAAGGTATTCAGTTTCTATCAGATATGAGAGAAGAAATGCAAAGAGATGGAATCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp CTTCATGTCCATGCTCTCTACAGTCCTCTTTCTTATAACTCCCAGAACAATTTGAGATATATGAAGTTGTaGACTCTGGTGGAAACAAGG +
Preference number: 5 (lower is better)
Translates to: LHVHALYSPLSYNSQNNLRYMKL*TLVETR
Trigger: CCTTGTTTCCACCAGAGTCAACAACTTCATATATCT...CAAATTGTTCTGGGAGTTATAAGAAAGAGGACTGTAGAGAGCATGGACATGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATCTGAAGGTTAGGAATTaGGCTTCATTGAATCTGTCA +
Preference number: 5 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHLKVRN*ASLNLS
Trigger: TGACAGATTCAATGAAGCCAAATTCCTAACCTTCAG...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS-3UTR CAA 90 bp CCACTAAAACTTAGTAATTGGCATTCCATTAGGCAGTGCTGTGCTACCATACATACAGATTCCATCTCTTaGCATTTCTTCTCTCATATC +
Preference number: 5 (lower is better)
Translates to: PLKLSNWHSIRQCCATIHTDSIS*HFFSHI
Trigger: GATATGAGAGAAGAAATGCAAAGAGATGGAATCTGT...ATGTATGGTAGCACAGCACTGCCTAATGGAATGCCAATTACTAAGTTTTAGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp CCAAATGTGATCTGCTGCAGGATGCAGGTGGCCTGGTaGGGATGTCCAATGAAGAGCAATGAGCAGAGAAAA +
Preference number: 6 (lower is better)
Translates to: PNVICCRMQVAW*GCPMKSNEQRK
Trigger: TTTTCTCTGCTCATTGCTCTTCATTGGACATCCCAACCAGGCCACCTGCATCCTGCAGCAGATCACATTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 72 bp TCAAGGAGACCATGCCATGGGACAAATGTGTGTCCTTaGTTGCTACCTGATGGACATAGGGAAACTGGTCAT +
Preference number: 6 (lower is better)
Translates to: SRRPCHGTNVCP*LLPDGHRETGH
Trigger: ATGACCAGTTTCCCTATGTCCATCAGGTAGCAACCAAGGACACACATTTGTCCCATGGCATGGTCTCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS TCA 72 bp TGGTCTTCAGCAAGGAAGCCACCTGCTGACAGTCAGTaGATATTCCTTTGGGTACTGCCATTTGCTGAGATT +
Preference number: 6 (lower is better)
Translates to: WSSARKPPADSQ*IFLWVLPFAEI
Trigger: AATCTCAGCAAATGGCAGTACCCAAAGGAATATTCACTGACTGTCAGCAGGTGGCTTCCTTGCTGAAGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp TCCTTTGGGTACTGCCATTTGCTGAGATTCTACTTGTaGAAGAATGAGTTCATGGTAGGTGTGGGCCACAGC +
Preference number: 6 (lower is better)
Translates to: SFGYCHLLRFYL*KNEFMVGVGHS
Trigger: GCTGTGGCCCACACCTACCATGAACTCATTCTTCAACAAGTAGAATCTCAGCAAATGGCAGTACCCAAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 90 bp CCTGATGCCAACATCCCTCTCATCCTTCTCCCTGGAGTAGTGAGCTaGAAAGCCAAGACTACAGTTATTGTTTTAGCCAACACTGTAGAA +
Preference number: 6 (lower is better)
Translates to: PDANIPLILLPGVVS*KAKTTVIVLANTVE
Trigger: TTCTACAGTGTTGGCTAAAACAATAACTGTAGTCTTGGCTTTCAAGCTCACTACTCCAGGGAGAAGGATGAGAGGGATGTTGGCATCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS TCA 72 bp GTAAATACTCTGGTCTTCAGCAAGGAAGCCACCTGCTaGCAGTCAGTGAATATTCCTTTGGGTACTGCCATT +
Preference number: 6 (lower is better)
Translates to: VNTLVFSKEATC*QSVNIPLGTAI
Trigger: AATGGCAGTACCCAAAGGAATATTCACTGACTGTCAGCAGGTGGCTTCCTTGCTGAAGACCAGAGTATTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 72 bp GGGAAACTGGTCATGGTCACTCAGCTTAGGATTAAATaGTCCAAAGAAAACCCTTGGTGTCCCAGTATGAAT +
Preference number: 6 (lower is better)
Translates to: GKLVMVTQLRIK*SKENPWCPSMN
Trigger: ATTCATACTGGGACACCAAGGGTTTTCTTTGGACCATTTAATCCTAAGCTGAGTGACCATGACCAGTTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 72 bp ACACAACTCTTTGGAGGCAGTGAGTTTTCTCTACGTTaGCATACTTATCATCTGGACACCTCACACACTGTT +
Preference number: 6 (lower is better)
Translates to: TQLFGGSEFSLR*HTYHLDTSHTV
Trigger: AACAGTGTGTGAGGTGTCCAGATGATAAGTATGCCAACGTAGAGAAAACTCACTGCCTCCAAAGAGTTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp TCCTGTGGCCCACTCCAAATCTTCAGATATATGAAGTaGTTGACTCTGGTGGAAACAAGGCAAATAGCTTCC +
Preference number: 6 (lower is better)
Translates to: SCGPLQIFRYMK*LTLVETRQIAS
Trigger: GGAAGCTATTTGCCTTGTTTCCACCAGAGTCAACAACTTCATATATCTGAAGATTTGGAGTGGGCCACAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp AACATCCCTCTCATCCTTCTCCCTGGAGTAGTGAGCTaGAAAGCCAAGACTACAGTTATTGTTTTAGCCAAC +
Preference number: 6 (lower is better)
Translates to: NIPLILLPGVVS*KAKTTVIVLAN
Trigger: GTTGGCTAAAACAATAACTGTAGTCTTGGCTTTCAAGCTCACTACTCCAGGGAGAAGGATGAGAGGGATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS GCA 72 bp CACCTGCTGACAGTCAGTGAATATTCCTTTGGGTACTaGCATTTGCTGAGATTCTACTTGTTGAAGAATGAG +
Preference number: 6 (lower is better)
Translates to: HLLTVSEYSFGY*HLLRFYLLKNE
Trigger: CTCATTCTTCAACAAGTAGAATCTCAGCAAATGGCAGTACCCAAAGGAATATTCACTGACTGTCAGCAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS GCA 72 bp ATTTTCTGGGCACTGAACACAGTCAAAGCAGCAGTCTaGTGTTTGTTTCTGATGAATTTTCCTGAATCCAGC +
Preference number: 6 (lower is better)
Translates to: IFWALNTVKAAV*CLFLMNFPESS
Trigger: GCTGGATTCAGGAAAATTCATCAGAAACAAACAGCAGACTGCTGCTTTGACTGTGTTCAGTGCCCAGAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CCA 72 bp GGAGATTTTACCAACCAGATTCCAGAGAGAACTAGTTaGATTAGGGTACAAATGGGAATGGCCAAGTTAGGT +
Preference number: 6 (lower is better)
Translates to: GDFTNQIPERTS*IRVQMGMAKLG
Trigger: ACCTAACTTGGCCATTCCCATTTGTACCCTAATCCAACTAGTTCTCTCTGGAATCTGGTTGGTAAAATCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp TGTGGCCCACTCCAAATCTTCAGATATATGAAGTTGTaGACTCTGGTGGAAACAAGGCAAATAGCTTCCTAT +
Preference number: 6 (lower is better)
Translates to: CGPLQIFRYMKL*TLVETRQIASY
Trigger: ATAGGAAGCTATTTGCCTTGTTTCCACCAGAGTCAACAACTTCATATATCTGAAGATTTGGAGTGGGCCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS CAA 72 bp CTGACAGTCAGTGAATATTCCTTTGGGTACTGCCATTaGCTGAGATTCTACTTGTTGAAGAATGAGTTCATG +
Preference number: 6 (lower is better)
Translates to: LTVSEYSFGYCH*LRFYLLKNEFM
Trigger: CATGAACTCATTCTTCAACAAGTAGAATCTCAGCAAATGGCAGTACCCAAAGGAATATTCACTGACTGTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10
CDS TCA 72 bp TCTCTTTGCATTTCTTCTCTCATATCTGATAGAAACTaGATACCTTGGTCATCATCTGAGATGACCAGTCCT +
Preference number: 6 (lower is better)
Translates to: SLCISSLISDRN*IPWSSSEMTSP
Trigger: AGGACTGGTCATCTCAGATGATGACCAAGGTATTCAGTTTCTATCAGATATGAGAGAAGAAATGCAAAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053253.10