RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R127 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093533

Ensembl transcript IDs: ENSMUST00000177481.4

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCACTTGTAGCAACAGATGGCCTTGCCCTCCATGGTTACTTTCCTaGATCCAGGCCCACAGCTTTCACTGCACACAGACTGTGGGATCT +
Preference number: 1 (lower is better)
Translates to: CTCSNRWPCPPWLLS*IQAHSFHCTQTVGS
Trigger: AGATCCCACAGTCTGTGTGCAGTGAAAGCTGTGGGCCTGGATTCAGGAAAGTAACCATGGAGGGCAAGGCCATCTGTTGCTACAAGTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 90 bp AATAGCTTTGGCCAGCACAGTAGCAAGAGCCATAGTGAAAGCAACTaGAAATGTGGTCTGCTGAAGGATGCAGGCAGCTGTGGTTGGCTT +
Preference number: 1 (lower is better)
Translates to: NSFGQHSSKSHSESN*KCGLLKDAGSCGWL
Trigger: AAGCCAACCACAGCTGCCTGCATCCTTCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCTTGCTACTGTGCTGGCCAAAGCTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 90 bp ACAGTAGCAAGAGCCATAGTGAAAGCAACTGCAAATGTGGTCTGCTaGAGGATGCAGGCAGCTGTGGTTGGCTTACCAATGAAGTTTAAA +
Preference number: 1 (lower is better)
Translates to: TVARAIVKATANVVC*RMQAAVVGLPMKFK
Trigger: TTTAAACTTCATTGGTAAGCCAACCACAGCTGCCTGCATCCTTCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCTTGCTACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 90 bp CATGGAGGCTGTGAGCCACAGCATACACACCATTATAAATACTTGTaGTCTCTTCATTCATGGCCACATCAAATATGTGACGAGGGAGTA +
Preference number: 1 (lower is better)
Translates to: HGGCEPQHTHHYKYL*SLHSWPHQICDEGV
Trigger: TACTCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGGCTCACAGCCTCCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 90 bp GCTGAGCCCTTGTTGCACAAAATGATGATGTGTCCATATTCAGTATaGGCATCTTGGTCTAAGAATGGTGGGGAAGTTGTCATCCATATT +
Preference number: 1 (lower is better)
Translates to: AEPLLHKMMMCPYSV*ASWSKNGGEVVIHI
Trigger: AATATGGATGACAACTTCCCCACCATTCTTAGACCAAGATGCTCATACTGAATATGGACACATCATCATTTTGTGCAACAAGGGCTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 90 bp CAACAAGATAATGTAACACTTGGGAGCAAATATGAAGGCAAGGAGTaGTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCAT +
Preference number: 1 (lower is better)
Translates to: QQDNVTLGSKYEGKE*CARSQDRENLHSHH
Trigger: ATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTTGCCTTCATATTTGCTCCCAAGTGTTACATTATCTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CCA 90 bp CCACAGCATACACACCATTATAAATACTTGTGCTCTCTTCATTCATaGCCACATCAAATATGTGACGAGGGAGTATATCCAGAGAAGCAT +
Preference number: 1 (lower is better)
Translates to: PQHTHHYKYLCSLHS*PHQICDEGVYPEKH
Trigger: ATGCTTCTCTGGATATACTCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CCA 90 bp TTTTTGGAAGCAGTTGCTCTTCTCTTTATTTGCATAATGACTCTCTaGACACTTCACACACTGGTCTACATCCGTGTCATTAGAAATCTC +
Preference number: 1 (lower is better)
Translates to: FLEAVALLFICIMTL*TLHTLVYIRVIRNL
Trigger: GAGATTTCTAATGACACGGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATAAAGAGAAGAGCAACTGCTTCCAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 90 bp AAAGGTCTTTCTTCTAGAGGGTGTTTCCTTCCTGATATGAAGAAATaGATTCTTGTCTGGTTTCAACAAGATAATGTAACACTTGGGAGC +
Preference number: 1 (lower is better)
Translates to: KGLSSRGCFLPDMKK*ILVWFQQDNVTLGS
Trigger: GCTCCCAAGTGTTACATTATCTTGTTGAAACCAGACAAGAATTCATTTCTTCATATCAGGAAGGAAACACCCTCTAGAAGAAAGACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 90 bp ATTGATTTGACAGTTGTCCAACATATGACAATTAGTGTCAGCAAATaGGCACTTGAAGAACAAATTCCACAGCTTAGGAAGATAAATGTC +
Preference number: 1 (lower is better)
Translates to: IDLTVVQHMTISVSK*ALEEQIPQLRKINV
Trigger: GACATTTATCTTCCTAAGCTGTGGAATTTGTTCTTCAAGTGCTCATTTGCTGACACTAATTGTCATATGTTGGACAACTGTCAAATCAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR TCA 90 bp GAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTGGTAGACAGGAAGATCTCATGGAGGCTGTaGGCCACAGCATACACACCA +
Preference number: 2 (lower is better)
Translates to: ENLHSHHGLPFSAVVDRKISWRL*ATAYTP
Trigger: TGGTGTGTATGCTGTGGCTCACAGCCTCCATGAGAT...CTTCCTGTCTACCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp AAGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCTGGTCTGCTGAAGGATaGAGGCAGCTGTGGTTGGCT +
Preference number: 2 (lower is better)
Translates to: KECCARSQDRENLHSHHGWSAEG*RQLWLA
Trigger: AGCCAACCACAGCTGCCTGCATCCTTCAGCAGACCA...GCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR TCA 90 bp GAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTGGTAGACAGGAAGCCATGGTTACTTTCCTaGATCCAGGCCCACAGCTTT +
Preference number: 2 (lower is better)
Translates to: ENLHSHHGLPFSAVVDRKPWLLS*IQAHSF
Trigger: AAAGCTGTGGGCCTGGATTCAGGAAAGTAACCATGG...CTTCCTGTCTACCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp TCCTGGAAAATTGATCTTAAAGGCAAGGACCACAGTAATAGCTTTGGCCAGCACAGCAACAGATGGCCTTaGCCTCCATGGTTACTTTCC +
Preference number: 2 (lower is better)
Translates to: SWKIDLKGKDHSNSFGQHSNRWP*PPWLLS
Trigger: GGAAAGTAACCATGGAGGGCAAGGCCATCTGTTGCT...GTGCTGGCCAAAGCTATTACTGTGGTCCTTGCCTTTAAGATCAATTTTCCAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 90 bp TCTCATGGAGGCTGTGAGCCACAGCATACACACCATTATAAATACTaGTGCTCTCTTCATTCATGGCCACATCAAATATGTGACGAGGGA +
Preference number: 2 (lower is better)
Translates to: SHGGCEPQHTHHYKY*CSLHSWPHQICDEG
Trigger: TCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGGCTCACAGCCTCCATGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 90 bp CCAGGAAGCTCACAGATTTTTGGAAGCAGTTGCTCTTCTCTTTATTaGCATAATGACTCTCTGGACACTTCACACACTGGTCTACATCCG +
Preference number: 2 (lower is better)
Translates to: PGSSQIFGSSCSSLY*HNDSLDTSHTGLHP
Trigger: CGGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATAAAGAGAAGAGCAACTGCTTCCAAAAATCTGTGAGCTTCCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR TCA 90 bp GAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTGGTAGACAGGAAGTGTCCATATTCAGTATaGGCATCTTGGTCTAAGAAT +
Preference number: 2 (lower is better)
Translates to: ENLHSHHGLPFSAVVDRKCPYSV*ASWSKN
Trigger: ATTCTTAGACCAAGATGCTCATACTGAATATGGACA...CTTCCTGTCTACCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp GAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTGGTAGACAGGAAGACCTTTGGGAGCATTTaGAGAAAAGGATCCTATTTT +
Preference number: 2 (lower is better)
Translates to: ENLHSHHGLPFSAVVDRKTFGSI*RKGSYF
Trigger: AAAATAGGATCCTTTTCTGCAAATGCTCCCAAAGGT...CTTCCTGTCTACCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp AAGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCAGAGCTTGATTATTTaGCTTGACAATAGGAGTGTC +
Preference number: 2 (lower is better)
Translates to: KECCARSQDRENLHSHHGQSLII*LDNRSV
Trigger: GACACTCCTATTGTCAAGGCAAATAATCAAGCTCTG...GCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 90 bp CTTCCTGGAAAATTGATCTTAAAGGCAAGGACCACAGTAATAGCTTaGGCCAGCACAGTAGCAAGAGCCATAGTGAAAGCAACTGCAAAT +
Preference number: 2 (lower is better)
Translates to: LPGKLILKARTTVIA*ASTVARAIVKATAN
Trigger: ATTTGCAGTTGCTTTCACTATGGCTCTTGCTACTGTGCTGGCCAAAGCTATTACTGTGGTCCTTGCCTTTAAGATCAATTTTCCAGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CCA 90 bp GAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGAACACCATCCCTTTGTaGTTTTCATATGGTTGCATT +
Preference number: 2 (lower is better)
Translates to: EAKIEKTCIATMAFPLVLNTIPL*FSYGCI
Trigger: AATGCAACCATATGAAAACCACAAAGGGATGGTGTT...CAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CCA 90 bp TCCTGGAAAATTGATCTTAAAGGCAAGGACCACAGTAATAGCTTTGGCCAGCACACAACTGTTGACCTTTaGGAGCATTTGCAGAAAAGG +
Preference number: 2 (lower is better)
Translates to: SWKIDLKGKDHSNSFGQHTTVDL*EHLQKR
Trigger: CCTTTTCTGCAAATGCTCCCAAAGGTCAACAGTTGT...GTGCTGGCCAAAGCTATTACTGTGGTCCTTGCCTTTAAGATCAATTTTCCAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp AACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTGGTAGACAGGAAGAAACATTATAAATACTTGTaGTCTCTTCATTCATGGCCA +
Preference number: 2 (lower is better)
Translates to: NLHSHHGLPFSAVVDRKKHYKYL*SLHSWP
Trigger: TGGCCATGAATGAAGAGAGCACAAGTATTTATAATG...TTTCTTCCTGTCTACCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp ATGTATCTGGCAAATTTCTGGACAAGAAGGCCATGGCATAACTCCCAAGGGCCAATAGGAGTGTCTCTATaGTTCACAAAGATTCCAATA +
Preference number: 2 (lower is better)
Translates to: MYLANFWTRRPWHNSQGPIGVSL*FTKIPI
Trigger: TATTGGAATCTTTGTGAAGCATAGAGACACTCCTAT...TGGCCCTTGGGAGTTATGCCATGGCCTTCTTGTCCAGAAATTTGCCAGATACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR GCA 90 bp TTTCTGGCCATTGAATTATCTGTTCAGATAAAGACAACTGTTGACCTTTGGGAGAGGAAAGTATTAAGATaGCAAGGAAAGAACACCATC +
Preference number: 2 (lower is better)
Translates to: FLAIELSVQIKTTVDLWERKVLR*QGKNTI
Trigger: GATGGTGTTCTTTCCTTGGCATCTTAATACTTTCCT...CTCCCAAAGGTCAACAGTTGTCTTTATCTGAACAGATAATTCAATGGCCAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 72 bp AGCAACAGATGGCCTTGCCCTCCATGGTTACTTTCCTaGATCCAGGCCCACAGCTTTCACTGCACACAGACT +
Preference number: 3 (lower is better)
Translates to: SNRWPCPPWLLS*IQAHSFHCTQT
Trigger: AGTCTGTGTGCAGTGAAAGCTGTGGGCCTGGATTCAGGAAAGTAACCATGGAGGGCAAGGCCATCTGTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CCA 72 bp CCAAGGGCCAAGAAGCAGAGGTATCCCAGGACTGAATaGAAGGCAACAGCTGAGCCCTTGTTGCACAAAATG +
Preference number: 3 (lower is better)
Translates to: PRAKKQRYPRTE*KATAEPLLHKM
Trigger: CATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCAGTCCTGGGATACCTCTGCTTCTTGGCCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 72 bp AGAGCCATAGTGAAAGCAACTGCAAATGTGGTCTGCTaGAGGATGCAGGCAGCTGTGGTTGGCTTACCAATG +
Preference number: 3 (lower is better)
Translates to: RAIVKATANVVC*RMQAAVVGLPM
Trigger: CATTGGTAAGCCAACCACAGCTGCCTGCATCCTTCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 72 bp AGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTTaGATAGCCACCATGGCCTTCCCTTTAGTGCTGTGG +
Preference number: 3 (lower is better)
Translates to: RSAVLEAKIEKT*IATMAFPLVLW
Trigger: CCACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp AAGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCACCACAGTAATAGCTTaGGCCAGCACAGTAGCAAGA +
Preference number: 3 (lower is better)
Translates to: KECCARSQDRENLHSHHGTTVIA*ASTVAR
Trigger: TCTTGCTACTGTGCTGGCCAAAGCTATTACTGTGGT...GCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp CCAAGGGGTCTTCATAGGCCAGGAAGCTCACAGATTTTTGGAAGCAGTTGCTCTGACCTTTGGGAGCATTaGCAGAAAAGGATCCTATTT +
Preference number: 3 (lower is better)
Translates to: PRGLHRPGSSQIFGSSCSDLWEH*QKRILF
Trigger: AAATAGGATCCTTTTCTGCAAATGCTCCCAAAGGTC...AGAGCAACTGCTTCCAAAAATCTGTGAGCTTCCTGGCCTATGAAGACCCCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp CCAAGGGGTCTTCATAGGCCAGGAAGCTCACAGATTTTTGGAAGCAGTTGCTCTTCATTAGAAATCTCATaGTCTGCACAAGGAGTGCAC +
Preference number: 3 (lower is better)
Translates to: PRGLHRPGSSQIFGSSCSSLEIS*SAQGVH
Trigger: GTGCACTCCTTGTGCAGACAATGAGATTTCTAATGA...AGAGCAACTGCTTCCAAAAATCTGTGAGCTTCCTGGCCTATGAAGACCCCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp GAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGACAGCTGAGCCCTTGTaGCACAAAATGATGATGTGT +
Preference number: 3 (lower is better)
Translates to: EAKIEKTCIATMAFPLVLTAEPL*HKMMMC
Trigger: ACACATCATCATTTTGTGCAACAAGGGCTCAGCTGT...CAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp GAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGAAGAACACCATCCCTTaGTGGTTTTCATATGGTTGC +
Preference number: 3 (lower is better)
Translates to: EAKIEKTCIATMAFPLVLKNTIP*WFSYGC
Trigger: GCAACCATATGAAAACCACAAAGGGATGGTGTTCTT...CAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp GAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGAGAATGGTGGGGAAGTaGTCATCCATATTCCACAAA +
Preference number: 3 (lower is better)
Translates to: EAKIEKTCIATMAFPLVLRMVGK*SSIFHK
Trigger: TTTGTGGAATATGGATGACAACTTCCCCACCATTCT...CAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 72 bp CTGGTCTACATCCGTGTCATTAGAAATCTCATTGTCTaGACAAGGAGTGCACTTGTAGCAACAGATGGCCTT +
Preference number: 3 (lower is better)
Translates to: LVYIRVIRNLIV*TRSALVATDGL
Trigger: AAGGCCATCTGTTGCTACAAGTGCACTCCTTGTGCAGACAATGAGATTTCTAATGACACGGATGTAGACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR GCA 72 bp AATGTAACACTTGGGAGCAAATATGAAGGCAAGGAGTaGTGTGCTAGAAGCCAAGATAGAGAAAACTTGCAT +
Preference number: 3 (lower is better)
Translates to: NVTLGSKYEGKE*CARSQDRENLH
Trigger: ATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTTGCCTTCATATTTGCTCCCAAGTGTTACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR-3UTR CAA 90 bp AATACTTGTGCTCTCTTCATTCATGGCCACATCAAATATGTGACGAGGGAGTATTCAGCAAATGAGCACTaGAAGAACAAATTCCACAGC +
Preference number: 3 (lower is better)
Translates to: NTCALFIHGHIKYVTREYSANEH*KNKFHS
Trigger: GCTGTGGAATTTGTTCTTCAAGTGCTCATTTGCTGA...ATACTCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGAGCACAAGTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 72 bp TTGTTGCACAAAATGATGATGTGTCCATATTCAGTATaGGCATCTTGGTCTAAGAATGGTGGGGAAGTTGTC +
Preference number: 3 (lower is better)
Translates to: LLHKMMMCPYSV*ASWSKNGGEVV
Trigger: GACAACTTCCCCACCATTCTTAGACCAAGATGCTCATACTGAATATGGACACATCATCATTTTGTGCAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CCA 72 bp GAATTATCTGTTCAGATAAAGACAACTGTTGACCTTTaGGAGCATTTGCAGAAAAGGATCCTATTTTCACTT +
Preference number: 3 (lower is better)
Translates to: ELSVQIKTTVDL*EHLQKRILFSL
Trigger: AAGTGAAAATAGGATCCTTTTCTGCAAATGCTCCCAAAGGTCAACAGTTGTCTTTATCTGAACAGATAATTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR TCA 72 bp TCTTCTAGAGGGTGTTTCCTTCCTGATATGAAGAAATaGATTCTTGTCTGGTTTCAACAAGATAATGTAACA +
Preference number: 3 (lower is better)
Translates to: SSRGCFLPDMKK*ILVWFQQDNVT
Trigger: TGTTACATTATCTTGTTGAAACCAGACAAGAATTCATTTCTTCATATCAGGAAGGAAACACCCTCTAGAAGA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp AAGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTaGCATAGCCACCATGGCCTTCCCTTTAGTGCTGTG +
Preference number: 4 (lower is better)
Translates to: KECCARSQDREN*HSHHGLPFSAV
Trigger: CACAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp AGCCACAGCATACACACCATTATAAATACTTGTGCTCTCTTCATTCATGGCCACGGCAGATGTTATCCATaGTGTTCCTGTCAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: SHSIHTIINTCALFIHGHGRCYP*CSCQCS
Trigger: GCTGCACTGACAGGAACATCATGGATAACATCTGCC...GTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp AAGGAGTGCTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCTATGAGACCAACCCATaGCCACCTAAAATGAACCAT +
Preference number: 4 (lower is better)
Translates to: KECCARSQDRENLHSHHGYETNP*PPKMNH
Trigger: ATGGTTCATTTTAGGTGGTCATGGGTTGGTCTCATA...GCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGCACTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp GCTGTGCTAGAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTCTGTCAGTGCAGCTGTaGAATTTCTCTTTTTACAAT +
Preference number: 4 (lower is better)
Translates to: AVLEAKIEKTCIATMAFPLSVQL*NFSFYN
Trigger: ATTGTAAAAAGAGAAATTTCACAGCTGCACTGACAG...AGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTCTAGCACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp GAAGCCAAGATAGAGAAAACTTGCATAGCCACCATGGCCTTCCCTTTAGTGCTGGTAATATGGGATAGTTaGATGTGGATTTTTCTTCCC +
Preference number: 4 (lower is better)
Translates to: EAKIEKTCIATMAFPLVLVIWDS*MWIFLP
Trigger: GGGAAGAAAAATCCACATTCAACTATCCCATATTAC...CAGCACTAAAGGGAAGGCCATGGTGGCTATGCAAGTTTTCTCTATCTTGGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp AAATTGATCTTAAAGGCAAGGACCACAGTAATAGCTTaGGCCAGCACAGTAGCAAGAGCCATAGTGAAAGCA +
Preference number: 4 (lower is better)
Translates to: KLILKARTTVIA*ASTVARAIVKA
Trigger: TGCTTTCACTATGGCTCTTGCTACTGTGCTGGCCAAAGCTATTACTGTGGTCCTTGCCTTTAAGATCAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp GGCTGTGAGCCACAGCATACACACCATTATAAATACTaGTGCTCTCTTCATTCATGGCCACATCAAATATGT +
Preference number: 4 (lower is better)
Translates to: GCEPQHTHHYKY*CSLHSWPHQIC
Trigger: ACATATTTGATGTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGGCTCACAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp AGCCACAGCATACACACCATTATAAATACTTGTGCTCTCTTCATTCATGGCCACACATCTCCTTTATGGTaGAATTCTTCAGAGATTTCG +
Preference number: 4 (lower is better)
Translates to: SHSIHTIINTCALFIHGHTSPLW*NSSEIS
Trigger: CGAAATCTCTGAAGAATTTCACCATAAAGGAGATGT...GTGGCCATGAATGAAGAGAGCACAAGTATTTATAATGGTGTGTATGCTGTGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR TCA 90 bp TCTCTTCATTCATGGCCACATCAAATATGTGACGAGGGAGTATATCCAGAGAAGGAATTTGGCAATATATaGAGTCCATGTTTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLHSWPHQICDEGVYPEKEFGNI*SPCFWS
Trigger: ACTCCAGAAACATGGACTTCATATATTGCCAAATTC...CTTCTCTGGATATACTCCCTCGTCACATATTTGATGTGGCCATGAATGAAGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS-3UTR CCA 90 bp CCATCCCTTTGTGGTTTTCATATGGTTGCATTTGTAGTTGCTGAAGTCTCATCTATTTCAATTCCTTTGTaGTCATCGGGGAGTATGAGA +
Preference number: 4 (lower is better)
Translates to: PSLCGFHMVAFVVAEVSSISIPL*SSGSMR
Trigger: TCTCATACTCCCCGATGACCACAAAGGAATTGAAAT...AGATGAGACTTCAGCAACTACAAATGCAACCATATGAAAACCACAAAGGGATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp TATGTGACGAGGGAGTATATCCAGAGAAGCATTGATTaGACAGTTGTCCAACATATGACAATTAGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: YVTREYIQRSID*TVVQHMTISVS
Trigger: GCTGACACTAATTGTCATATGTTGGACAACTGTCAAATCAATGCTTCTCTGGATATACTCCCTCGTCACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp GAAGGTGAGTGTGATGAGCAAAATATAACTCAGAGCTaGATTATTTGCCTTGACAATAGGAGTGTCTCTATG +
Preference number: 4 (lower is better)
Translates to: EGECDEQNITQS*IICLDNRSVSM
Trigger: CATAGAGACACTCCTATTGTCAAGGCAAATAATCAAGCTCTGAGTTATATTTTGCTCATCACACTCACCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
3UTR CAA 72 bp TGGGGAAGTTGTCATCCATATTCCACAAATAAAAAGTaGGATCACTTTGCATATAGGAATGATGTAGTTTGG +
Preference number: 4 (lower is better)
Translates to: WGSCHPYSTNKK*DHFAYRNDVVW
Trigger: CCAAACTACATCATTCCTATATGCAAAGTGATCCAACTTTTTATTTGTGGAATATGGATGACAACTTCCCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS TCA 90 bp TTTAAAGAGTTGAAGCAATGTCCCAATTTGGGCAGATGTTATCCATaGTGTTCCTGTCAGTGCAGCTGTGAAATTTCTCTTTTTACAATT +
Preference number: 5 (lower is better)
Translates to: FKELKQCPNLGRCYP*CSCQCSCEISLFTI
Trigger: AATTGTAAAAAGAGAAATTTCACAGCTGCACTGACAGGAACATCATGGATAACATCTGCCCAAATTGGGACATTGCTTCAACTCTTTAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS CCA 72 bp TCAATGAAACAATGGCAAGTGAAAGAGATGTGTCCTTaGGGGCCATCTGGTAGAGAGAAGGATACTGACCAC +
Preference number: 6 (lower is better)
Translates to: SMKQWQVKEMCP*GPSGREKDTDH
Trigger: GTGGTCAGTATCCTTCTCTCTACCAGATGGCCCCCAAGGACACATCTCTTTCACTTGCCATTGTTTCATTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS TCA 72 bp CAAGAGATATGTTGGGTAAAAGATTGGGGTTCCCATTaGTCTCCTCAATGGCAAATTGCAGAGCGAGAATAT +
Preference number: 6 (lower is better)
Translates to: QEICWVKDWGSH*SPQWQIAEREY
Trigger: ATATTCTCGCTCTGCAATTTGCCATTGAGGAGATCAATGGGAACCCCAATCTTTTACCCAACATATCTCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS TCA 72 bp TTGAAGCAATGTCCCAATTTGGGCAGATGTTATCCATaGTGTTCCTGTCAGTGCAGCTGTGAAATTTCTCTT +
Preference number: 6 (lower is better)
Translates to: LKQCPNLGRCYP*CSCQCSCEISL
Trigger: AAGAGAAATTTCACAGCTGCACTGACAGGAACATCATGGATAACATCTGCCCAAATTGGGACATTGCTTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4
CDS TCA 72 bp CTGTATGTGATTGTCCAAATAGTAATATGGGATAGTTaGATGTGGATTTTTCTTCCCAGTGTAGAATGTGTG +
Preference number: 6 (lower is better)
Translates to: LYVIVQIVIWDS*MWIFLPSVECV
Trigger: CACACATTCTACACTGGGAAGAAAAATCCACATTCAACTATCCCATATTACTATTTGGACAATCACATACAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177481.4