RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R117 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091407

Ensembl transcript IDs: ENSMUST00000171996.3, ENSMUST00000234002.2, ENSMUST00000234323.2

Found 349 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCAGGCATAATGGGCAAAAGGAGAGGAGGCCAGAGGACAGGGAAATaGATAGAAATCTGCCACTGTAATGATGTAGGTTGGGGGCAGCGG +
Preference number: 1 (lower is better)
Translates to: SGIMGKRRGGQRTGK*IEICHCNDVGWGQR
Trigger: CCGCTGCCCCCAACCTACATCATTACAGTGGCAGATTTCTATCCATTTCCCTGTCCTCTGGCCTCCTCTCCTTTTGCCCATTATGCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 90 bp AGGACAGGGAAATGGATAGAAATCTGCCACTGTAATGATGTAGGTTaGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGATG +
Preference number: 1 (lower is better)
Translates to: RTGKWIEICHCNDVG*GQRETPRKSQISGM
Trigger: CATCCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATTACAGTGGCAGATTTCTATCCATTTCCCTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 90 bp GATGAGCAAGATATAGGTGAGAGTTCTGTTATTGGCCTTAACAATTaGAGTACTGTGGTGCTTCACCATGACCCCGAGAACCACAGTTGT +
Preference number: 1 (lower is better)
Translates to: DEQDIGESSVIGLNN*STVVLHHDPENHSC
Trigger: ACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGTTAAGGCCAATAACAGAACTCTCACCTATATCTTGCTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp TCATCATTGTCTGAGATGACCAACCCTACCCAGTTCCAACTGAAATaGATTATGAAGGATACCAGGGCAAGGGCTAGAGATGTATGGTCA +
Preference number: 1 (lower is better)
Translates to: SSLSEMTNPTQFQLK*IMKDTRARARDVWS
Trigger: TGACCATACATCTCTAGCCCTTGCCCTGGTATCCTTCATAATTCATTTCAGTTGGAACTGGGTAGGGTTGGTCATCTCAGACAATGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 90 bp AATGCATTGACTGAACCCTTGTGGCATACGATGATGATCTGTCCATaGTCAGAATGTGCATCAATATCAACAGAAGGAGGAGAAGCTCTC +
Preference number: 1 (lower is better)
Translates to: NALTEPLWHTMMICP*SECASISTEGGEAL
Trigger: GAGAGCTTCTCCTCCTTCTGTTGATATTGATGCACATTCTGAGCATGGACAGATCATCATCGTATGCCACAAGGGTTCAGTCAATGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp TCCATCTCCTTCCACCTGCTTCTATTTAGGTGCTTCTCACTCATTTaGCATTCCTCAGTTGAGAATTCTTTGTGTAGCTTGCACCCCATT +
Preference number: 1 (lower is better)
Translates to: SISFHLLLFRCFSLI*HSSVENSLCSLHPI
Trigger: AATGGGGTGCAAGCTACACAAAGAATTCTCAACTGAGGAATGTCAAATGAGTGAGAAGCACCTAAATAGAAGCAGGTGGAAGGAGATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp ACAAGGAGAGTAAGGAAAGTGCCATCCCCAGTGGTTCTTCATAGCTaGGAAATACAACAGTTTTACGAATGCATTGATTCTGTTCTGTGT +
Preference number: 1 (lower is better)
Translates to: TRRVRKVPSPVVLHS*EIQQFYECIDSVLC
Trigger: ACACAGAACAGAATCAATGCATTCGTAAAACTGTTGTATTTCTCAGCTATGAAGAACCACTGGGGATGGCACTTTCCTTACTCTCCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp AGAATTTCCATGTGCATTTTGGCTTTCTGTTGCTTTTGTTGTTATTaGAGACCAGCCTTAGTCCATGGTGATTTGATAGGGTGCATGGTA +
Preference number: 1 (lower is better)
Translates to: RISMCILAFCCFCCY*RPALVHGDLIGCMV
Trigger: TACCATGCACCCTATCAAATCACCATGGACTAAGGCTGGTCTTCAATAACAACAAAAGCAACAGAAAGCCAAAATGCACATGGAAATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp TTGCAGTTTCATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTaGGACATTGGTGTTTTGTCCAGGGAAATTTTTCCTCTGCCCAAT +
Preference number: 1 (lower is better)
Translates to: LQFHEVPFVICDLRA*DIGVLSREIFPLPN
Trigger: ATTGGGCAGAGGAAAAATTTCCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCATGAAACTGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 90 bp TGTCTGGATGGTCCATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTaGAACTCTTTCAATGGATATTTTATTCCCTATTCTAGAGAGCAA +
Preference number: 1 (lower is better)
Translates to: CLDGPSFRLSSKLCL*NSFNGYFIPYSREQ
Trigger: TTGCTCTCTAGAATAGGGAATAAAATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATGGACCATCCAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 90 bp GTTTCCATTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCTTGCTaGCTACTCCTCTTGGGTTTATTTGCTTCCTTTTGTTCTAGAGCT +
Preference number: 1 (lower is better)
Translates to: VSIWLISALSLIISC*LLLLGLFASFCSRA
Trigger: AGCTCTAGAACAAAAGGAAGCAAATAAACCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACTCAGGGCTGAAATCAACCAAATGGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp ACATTTGTCTCGTTAGAAATTTCATTTTCAGGACAGGGTTTGCAATaGAAACAGCATGCTGCCATTCCGTCCATCCTGAATTTTCTAGAT +
Preference number: 1 (lower is better)
Translates to: TFVSLEISFSGQGLQ*KQHAAIPSILNFLD
Trigger: ATCTAGAAAATTCAGGATGGACGGAATGGCAGCATGCTGTTTTCATTGCAAACCCTGTCCTGAAAATGAAATTTCTAACGAGACAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 90 bp TTGCTGTGTTGTCTTATTGACAGTGTCCTTTGCCTTATAGAGCTTTaGAGTTTCATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTT +
Preference number: 1 (lower is better)
Translates to: LLCCLIDSVLCLIEL*SFMRFHLSFVILEL
Trigger: AAGCTCTAAGATCACAAATGACAAATGGAACCTCATGAAACTGCAAAGCTCTATAAGGCAAAGGACACTGTCAATAAGACAACACAGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 90 bp CTATTTCGATTGAGCTTTGTTCAAAGAGATAAGAATCGATCAATTTaGATTCATATACATGCTGACCTCCAGGTCAACCATCACCATGTG +
Preference number: 1 (lower is better)
Translates to: LFRLSFVQRDKNRSI*IHIHADLQVNHHHV
Trigger: CACATGGTGATGGTTGACCTGGAGGTCAGCATGTATATGAATCCAAATTGATCGATTCTTATCTCTTTGAACAAAGCTCAATCGAAATAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 90 bp AGCTTTACCAGATATTCATCTGGGCATTTGACAGAGTTCAATGTCTaGACAAAATGTTTAAACCCAGAAATCTCACTATGGTGTTGTCCA +
Preference number: 1 (lower is better)
Translates to: SFTRYSSGHLTEFNV*TKCLNPEISLWCCP
Trigger: TGGACAACACCATAGTGAGATTTCTGGGTTTAAACATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAATATCTGGTAAAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp CCTATTCTAGAGAGCAATGAAGTATCCACTAGTTGGTCTTCCTTCTaGATTTTCCTGTGTTTTGGAAATTGTATCTTGGTTATTCTAGGT +
Preference number: 1 (lower is better)
Translates to: PILESNEVSTSWSSF*IFLCFGNCILVILG
Trigger: ACCTAGAATAACCAAGATACAATTTCCAAAACACAGGAAAATTCAGAAGGAAGACCAACTAGTGGATACTTCATTGCTCTCTAGAATAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 90 bp TTGTTAAGAATAGTTTTTGCTACCCTAGGTTTTTGTTATTCCAAATaGACTTGCAAGTTGCTCTTTCTAAGACCAGGAGGAATTGAGTTG +
Preference number: 1 (lower is better)
Translates to: LLRIVFATLGFCYSK*TCKLLFLRPGGIEL
Trigger: CAACTCAATTCCTCCTGGTCTTAGAAAGAGCAACTTGCAAGTTCATTTGGAATAACAAAAACCTAGGGTAGCAAAAACTATTCTTAACAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 90 bp AAAATCCCAGATATCTGGGATGTGAGAGTTTTTCTGAACTCAATATaGATAACCTTAGCTGAAATGACCAACAATAGGGATATAGAACAT +
Preference number: 1 (lower is better)
Translates to: KIPDIWDVRVFLNSI*ITLAEMTNNRDIEH
Trigger: ATGTTCTATATCCCTATTGTTGGTCATTTCAGCTAAGGTTATCCATATTGAGTTCAGAAAAACTCTCACATCCCAGATATCTGGGATTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAAATTTTGGATGGACCCCAGTGTaGGGCAGTGTCTGGATGGTC +
Preference number: 2 (lower is better)
Translates to: LPKVSNGGMGPHTHLQNFGWTPV*GSVWMV
Trigger: GACCATCCAGACACTGCCCCACACTGGGGTCCATCC...AAAATTTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGTTACCTCACTCAGGATaGTATCCTCCAGATACATCC +
Preference number: 2 (lower is better)
Translates to: NDVGWGQRETPRKSQISGLPHSG*YPPDTS
Trigger: GGATGTATCTGGAGGATATCATCCTGAGTGAGGTAA...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACAATTGGAGTACTGTGGTGCTTCACCATGACCCCGAGAACCACAGTTGTGAATATTGGAGTACTGTGGTaGTTCACCATGACCCCGAGA +
Preference number: 2 (lower is better)
Translates to: TIGVLWCFTMTPRTTVVNIGVLW*FTMTPR
Trigger: TCTCGGGGTCATGGTGAAGCACCACAGTACTCCAAT...ATTCACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGATGGCTTATTATGGGATaGACCCCAGTGTGGGGCAGT +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRWLIMG*TPVWGS
Trigger: ACTGCCCCACACTGGGGTCCATCCCATAATAAGCCA...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGGTCATCAGTCTAACTTaGGTTCCATTCCACACACAG +
Preference number: 2 (lower is better)
Translates to: NDVGWGQRETPRKSQISGVISLT*VPFHTQ
Trigger: CTGTGTGTGGAATGGAACCCAAGTTAGACTGATGAC...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ACAATTGGAGTACTGTGGTGCTTCACCATGACCCCGAGAACCACAGTTGTGAATGGACAGGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 2 (lower is better)
Translates to: TIGVLWCFTMTPRTTVVNGQGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCCTGTCC...ATTCACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGCGAGAACCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEREPQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGGTTCTCG...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAACAAGTATGGGAGACTaGGGGAAGGACGAACTTGTG +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRTSMGD*GKDELV
Trigger: CACAAGTTCGTCCTTCCCCCAGTCTCCCATACTTGT...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGCTCTGGTGGAATTTCTaGGGTCTCATAAGTATGCTA +
Preference number: 2 (lower is better)
Translates to: NDVGWGQRETPRKSQISGLWWNF*GLISML
Trigger: TAGCATACTTATGAGACCCCAGAAATTCCACCAGAG...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTGCTGTAGAATGCAGGTaGCTGCATTTGGATGGCCAA +
Preference number: 2 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLAVECR*LHLDGQ
Trigger: TTGGCCATCCAAATGCAGCCACCTGCATTCTACAGC...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGACACTGGAGGCCAAAATaGAGAAGATCTCCACAGCCA +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRHWRPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCATTTTGGCCTCCAGTG...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTAACTTGGGTTCCATTCCACACACAGGCACCAAACTCTGACACTATTATTGATCTACCAGCAGCTGACTaGGACAGATGTGAACACCGA +
Preference number: 2 (lower is better)
Translates to: LTWVPFHTQAPNSDTIIDLPAAD*DRCEHR
Trigger: TCGGTGTTCACATCTGTCTCAGTCAGCTGCTGGTAG...ATCAATAATAGTGTCAGAGTTTGGTGCCTGTGTGTGGAATGGAACCCAAGTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGCAAGCTCCTAGCATATaGTTCTTCCAGTTTCTTTCT +
Preference number: 2 (lower is better)
Translates to: NDVGWGQRETPRKSQISGQAPSI*FFQFLS
Trigger: AGAAAGAAACTGGAAGAAGCATATGCTAGGAGCTTG...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAGCAATGAAAACAGCATaGTGCCATTCCGTCCATCCT +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRAMKTA*CHSVHP
Trigger: AGGATGGACGGAATGGCAGCATGCTGTTTTCATTGC...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTGGATGGACCCCAGTGTaGGGCAGTGTCTGGATGGTC +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLGWTPV*GSVWMV
Trigger: GACCATCCAGACACTGCCCCACACTGGGGTCCATCC...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACTGGCTTATTATGGGATaGACCCCAGTGTGGGGCAGT +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHWLIMG*TPVWGS
Trigger: ACTGCCCCACACTGGGGTCCATCCCATAATAAGCCA...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACTCTCCAATGGTGGGATaGGCCCACACACCCATCTTC +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYSPMVG*AHTPIF
Trigger: GAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGA...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTGGGACAAAACAAGTATaGGAGACTGGGGGAAGGACG +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPGTKQV*ETGGRT
Trigger: CGTCCTTCCCCCAGTCTCCCATACTTGTTTTGTCCC...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AGCACTGCACACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATCTTTCCCATTGTCCTTaGGCAGATTATCAAGCTTTT +
Preference number: 2 (lower is better)
Translates to: STAHRSWHLCTSFCPLYHLSHCP*ADYQAF
Trigger: AAAAGCTTGATAATCTGCCCAAGGACAATGGGAAAG...ATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCTACCAGCAGCTGACTaGGACAGATGTGAACACCGA +
Preference number: 2 (lower is better)
Translates to: HSLGGCDFECQNYSNRFSLPAAD*DRCEHR
Trigger: TCGGTGTTCACATCTGTCTCAGTCAGCTGCTGGTAG...GCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTAACTTGGGTTCCATTCCACACACAGGCACCAAACTCTGACACTATTATTGATCATCATTGTCTGAGATaGCCAACCCTACCCAGTTCC +
Preference number: 2 (lower is better)
Translates to: LTWVPFHTQAPNSDTIIDHHCLR*PTLPSS
Trigger: GGAACTGGGTAGGGTTGGTCATCTCAGACAATGATG...ATCAATAATAGTGTCAGAGTTTGGTGCCTGTGTGTGGAATGGAACCCAAGTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TGCTGCCATTCCGTCCATCCTGAATTTTCTAGATCCAGGACCACATTCAGCACTTCATTGGAATCATGTTaGCAAAGGCAAAGCAGACTG +
Preference number: 2 (lower is better)
Translates to: CCHSVHPEFSRSRTTFSTSLESC*QRQSRL
Trigger: CAGTCTGCTTTGCCTTTGTCAACATGATTCCAATGA...AGTGCTGAATGTGGTCCTGGATCTAGAAAATTCAGGATGGACGGAATGGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGCGAAGTTGGCACCTGTaGACTTCCTTTTGCCCACTC +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGRSWHL*TSFCPL
Trigger: GAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCG...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCGACCACATTCAGCACTaGACACCGAAGTTGGCACCT +
Preference number: 2 (lower is better)
Translates to: HSLGGCDFECQNYSNRFSDHIQH*TPKLAP
Trigger: AGGTGCCAACTTCGGTGTGCAGTGCTGAATGTGGTC...GCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACAATTGGAGTACTGTGGTGCTTCACCATGACCCCGAGAACCACAGTTGTGAATTTTCAGGACAGGGTTTaGAATGAAAACAGCATGCTG +
Preference number: 2 (lower is better)
Translates to: TIGVLWCFTMTPRTTVVNFQDRV*NENSML
Trigger: CAGCATGCTGTTTTCATTGCAAACCCTGTCCTGAAA...ATTCACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTGTCATCAGTCTAACTTaGGTTCCATTCCACACACAG +
Preference number: 2 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLVISLT*VPFHTQ
Trigger: CTGTGTGTGGAATGGAACCCAAGTTAGACTGATGAC...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGTCTCCAATGGTGGGATaGGCCCACACACCCATCTTC +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSSPMVG*AHTPIF
Trigger: GAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGA...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGGGGACAAAACAAGTATaGGAGACTGGGGGAAGGACG +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGGTKQV*ETGGRT
Trigger: CGTCCTTCCCCCAGTCTCCCATACTTGTTTTGTCCC...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACGGTTTAGGAGCTCTCTaGTGGAATTTCTGGGGTCTC +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHGLGAL*WNFWGL
Trigger: GAGACCCCAGAAATTCCACCAGAGAGCTCCTAAACC...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACCCAGCATCCCTGCACTaGAGGCCAAAATGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYPASLH*RPKWRR
Trigger: TCTTCTCCATTTTGGCCTCCAGTGCAGGGATGCTGG...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATATCTTCAGAAGTTGGTCTTCCTTCTaGATTTTCCTGTGTTTTGGA +
Preference number: 2 (lower is better)
Translates to: HRSWHLCTSFCPLYHIFRSWSSF*IFLCFG
Trigger: TCCAAAACACAGGAAAATTCAGAAGGAAGACCAACT...TCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CATAGTCTCTGTATTCCTAGAGATTCCCACATTCTAAAGCTCACAGCTAAGGTACATCATTGTCTGAGATaGCCAACCCTACCCAGTTCC +
Preference number: 2 (lower is better)
Translates to: HSLCIPRDSHILKLTAKVHHCLR*PTLPSS
Trigger: GGAACTGGGTAGGGTTGGTCATCTCAGACAATGATG...TACCTTAGCTGTGAGCTTTAGAATGTGGGAATCTCTAGGAATACAGAGACTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGATTCATCTGGGCATTTaGCAGAGTTCAATGTCTGGA +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEIHLGI*QSSMSG
Trigger: TCCAGACATTGAACTCTGTCAAATGCCCAGATGAAT...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGCTTACATTTAGAGGCTaGGACCTCACAGTTAAAGTG +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMELTFRG*DLTVKV
Trigger: CACTTTAACTGTGAGGTCTCAGCCTCTAAATGTAAG...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGAACCATTCCAATGAGTaGTTGGATGAGCAGTTCTTC +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMENHSNE*LDEQFF
Trigger: GAAGAACTGCTCATCCAATCACTCATTGGAATGGTT...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCACGAGAACCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 2 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSREPQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGGTTCTCG...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGCCTTTGACCCCCTTTTaGATTCTAATTGTTCTGGCT +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEPLTPF*ILIVLA
Trigger: AGCCAGAACAATTAGAATGCAAAAGGGGGTCAAAGG...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACACGAAGTTGGCACCTGTaGACTTCCTTTTGCCCACTC +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTRSWHL*TSFCPL
Trigger: GAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCG...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTCTCCAATGGTGGGATaGGCCCACACACCCATCTTC +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILASPMVG*AHTPIF
Trigger: GAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGGGGACAAAACAAGTATaGGAGACTGGGGGAAGGACG +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSGTKQV*ETGGRT
Trigger: CGTCCTTCCCCCAGTCTCCCATACTTGTTTTGTCCC...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAGCCCTCGGGATAGTCTaGTTAAGTGTTTATCTATTG +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRALGIV*LSVYLL
Trigger: CAATAGATAAACACTTAACCAGACTATCCCGAGGGC...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGGCCCTCGGGATAGTCTaGTTAAGTGTTTATCTATTG +
Preference number: 2 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEALGIV*LSVYLL
Trigger: CAATAGATAAACACTTAACCAGACTATCCCGAGGGC...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGACTCTGGTGGAATTTCTaGGGTCTCATAAGTATGCTA +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRLWWNF*GLISML
Trigger: TAGCATACTTATGAGACCCCAGAAATTCCACCAGAG...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAGTGACCATGAATGTGTaGGTTCATTTCTGCATCTTC +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRVTMNV*VHFCIF
Trigger: GAAGATGCAGAAATGAACCCACACATTCATGGTCAC...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATATCTTCAGAACAGGATTAGTGAACTaGGTCTTTCTCAGAAAGGAA +
Preference number: 2 (lower is better)
Translates to: HRSWHLCTSFCPLYHIFRTGLVN*VFLRKE
Trigger: TTCCTTTCTGAGAAAGACCCAGTTCACTAATCCTGT...TCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCGTGGCTGCATTTGGATaGCCAATGAAGAGCAAAGGG +
Preference number: 2 (lower is better)
Translates to: HSLGGCDFECQNYSNRFSVAAFG*PMKSKG
Trigger: CCCTTTGCTCTTCATTGGCCATCCAAATGCAGCCAC...GCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCTACCAGCAGCTGACTaGGACAGATGTGAACACCGA +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGLPAAD*DRCEHR
Trigger: TCGGTGTTCACATCTGTCTCAGTCAGCTGCTGGTAG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCGGACAGGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 2 (lower is better)
Translates to: HSLGGCDFECQNYSNRFSGQGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCCTGTCC...GCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAATTGACAGTGTCCTTTaGCTTATAGAGCTTTGCAGT +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRIDSVL*LIELCS
Trigger: ACTGCAAAGCTCTATAAGGCAAAGGACACTGTCAAT...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTGACCACATTCAGCACTaGACACCGAAGTTGGCACCT +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLDHIQH*TPKLAP
Trigger: AGGTGCCAACTTCGGTGTGCAGTGCTGAATGTGGTC...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATATCTTCAGAAAAATCCCAGATATCTaGGATGTGAGAGTTTTTCTG +
Preference number: 2 (lower is better)
Translates to: HRSWHLCTSFCPLYHIFRKIPDI*DVRVFL
Trigger: CAGAAAAACTCTCACATCCCAGATATCTGGGATTTT...TCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAACAAGTATGGGAGACTaGGGGAAGGACGAACTTGTG +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTTSMGD*GKDELV
Trigger: CACAAGTTCGTCCTTCCCCCAGTCTCCCATACTTGT...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGACAGGAGGAATTGAGTTaGAATTTTGATGGGAATTGC +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRQEELS*NFDGNC
Trigger: GCAATTCCCATCAAAATTCCAACTCAATTCCTCCTG...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTCTGTCTTTTTACCACTaGATGGTTTTAGCTCCTTTG +
Preference number: 2 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLLSFYH*MVLAPL
Trigger: CAAAGGAGCTAAAACCATCCAGTGGTAAAAAGACAG...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTACAGGATTAGTGAACTaGGTCTTTCTCAGAAAGGAA +
Preference number: 2 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLTGLVN*VFLRKE
Trigger: TTCCTTTCTGAGAAAGACCCAGTTCACTAATCCTGT...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTGGCTGCATTTGGATaGCCAATGAAGAGCAAAGGG +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTVAAFG*PMKSKG
Trigger: CCCTTTGCTCTTCATTGGCCATCCAAATGCAGCCAC...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGAGCAGGTGGCTGCATTTaGATGGCCAATGAAGAGCAA +
Preference number: 2 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRAGGCI*MANEEQ
Trigger: TTGCTCTTCATTGGCCATCCAAATGCAGCCACCTGC...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGATATGGAGCAGAGAATaGAGGAAAGGCCACCTAGTC +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSIWSRE*RKGHLV
Trigger: GACTAGGTGGCCTTTCCTTCATTCTCTGCTCCATAT...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTAAGACCAGGAGGAATTaGGTTGGAATTTTGATGGGA +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPKTRRN*VGILMG
Trigger: TCCCATCAAAATTCCAACTCAATTCCTCCTGGTCTT...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTAACTTGGGTTCCATTCCACACACAGGCACCAAACTCTGACACTATTATTGATTCATTGGAATCATGTTaGCAAAGGCAAAGCAGACTG +
Preference number: 2 (lower is better)
Translates to: LTWVPFHTQAPNSDTIIDSLESC*QRQSRL
Trigger: CAGTCTGCTTTGCCTTTGTCAACATGATTCCAATGA...ATCAATAATAGTGTCAGAGTTTGGTGCCTGTGTGTGGAATGGAACCCAAGTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTATTGGAGTACTGTGGTaGTTCACCATGACCCCGAGA +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCIGVLW*FTMTPR
Trigger: TCTCGGGGTCATGGTGAAGCACCACAGTACTCCAAT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCTGTAATGATGTAGGTTaGGGGCAGCGGGAGACTCCT +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFCNDVG*GQRETP
Trigger: AGGAGTCTCCCGCTGCCCCCAACCTACATCATTACA...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCATGTAATGATGTAGGTTaGGGGCAGCGGGAGACTCCT +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPCNDVG*GQRETP
Trigger: AGGAGTCTCCCGCTGCCCCCAACCTACATCATTACA...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACAATTGGAGTACTGTGGTGCTTCACCATGACCCCGAGAACCACAGTTGTGAATTTTCCATGTGCATTTTaGCTTTCTGTTGCTTTTGTT +
Preference number: 2 (lower is better)
Translates to: TIGVLWCFTMTPRTTVVNFPCAF*LSVAFV
Trigger: AACAAAAGCAACAGAAAGCCAAAATGCACATGGAAA...ATTCACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACGCCCTCGGGATAGTCTaGTTAAGTGTTTATCTATTG +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHALGIV*LSVYLL
Trigger: CAATAGATAAACACTTAACCAGACTATCCCGAGGGC...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTCCATTTGGTTTAATATaGTCTACTGGGTTGCTGTAT +
Preference number: 2 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLPFGLI*STGLLY
Trigger: ATACAGCAACCCAGTAGACCATATTAAACCAAATGG...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACCTCTGGTGGAATTTCTaGGGTCTCATAAGTATGCTA +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHLWWNF*GLISML
Trigger: TAGCATACTTATGAGACCCCAGAAATTCCACCAGAG...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTGCTGTAGAATGCAGGTaGCTGCATTTGGATGGCCAA +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCAVECR*LHLDGQ
Trigger: TTGGCCATCCAAATGCAGCCACCTGCATTCTACAGC...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACCCACTTGTCAGTGAGTaGATATCAAGTGACTTCTTT +
Preference number: 2 (lower is better)
Translates to: LGGCDFECQNYSNRFSQDPLVSE*ISSDFF
Trigger: AAAGAAGTCACTTGATATGCACTCACTGACAAGTGG...GTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTCCACTTGTCAGTGAGTaGATATCAAGTGACTTCTTT +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPPLVSE*ISSDFF
Trigger: AAAGAAGTCACTTGATATGCACTCACTGACAAGTGG...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGATCCAAACTTTGTCTCTaGAACTCTTTCAATGGATAT +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRSKLCL*NSFNGY
Trigger: ATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGA...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTTTTTGTGGCTTATTATaGGATGGACCCCAGTGTGGG +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLFCGLL*DGPQCG
Trigger: CCCACACTGGGGTCCATCCCATAATAAGCCACAAAA...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGAAACTTGTGTGGAAGATaGGATGGTAAGGGGAAAAGG +
Preference number: 2 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRNLCGR*DGKGKR
Trigger: CCTTTTCCCCTTACCATCCCATCTTCCACACAAGTT...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCACAAGTATGGGAGACTaGGGGAAGGACGAACTTGTG +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFTSMGD*GKDELV
Trigger: CACAAGTTCGTCCTTCCCCCAGTCTCCCATACTTGT...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAAAGTTCCTTTCCATTTaGTTTAATATGGTCTACTGG +
Preference number: 2 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRKFLSI*FNMVYW
Trigger: CCAGTAGACCATATTAAACCAAATGGAAAGGAACTT...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTCAGGAGGAATTGAGTTaGAATTTTGATGGGAATTGC +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPQEELS*NFDGNC
Trigger: GCAATTCCCATCAAAATTCCAACTCAATTCCTCCTG...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCAGTGACCATGAATGTGTaGGTTCATTTCTGCATCTTC +
Preference number: 2 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSVTMNV*VHFCIF
Trigger: GAAGATGCAGAAATGAACCCACACATTCATGGTCAC...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGCAACTCTTTCAATGGATATTAGGACAATTCTCCAGTaGATTTTATTGTCCCCACCC +
Preference number: 2 (lower is better)
Translates to: HPFVLAPNFVSATLSMDIRTILQ*ILLSPP
Trigger: GGGTGGGGACAATAAAATCCACTGGAGAATTGTCCT...AATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGAAGGACAATTCTCCAGTaGATTTTATTGTCCCCACCC +
Preference number: 2 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRRTILQ*ILLSPP
Trigger: GGGTGGGGACAATAAAATCCACTGGAGAATTGTCCT...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp AGGCTACTGATTTGTTTAATTTTATATCCAGCCACTTTGCTGAAGTaGTTTACTAGGTTTAGGAGCTCTCTGGTGGAATTTCTGGGGTCT +
Preference number: 2 (lower is better)
Translates to: RLLICLILYPATLLK*FTRFRSSLVEFLGS
Trigger: AGACCCCAGAAATTCCACCAGAGAGCTCCTAAACCTAGTAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAAACAAATCAGTAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp AGTGTCCTTTGCCTTATAGAGCTTTGCAGTTTCATGAGGTTCCATTaGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: SVLCLIELCSFMRFH*SFVILELETLVFCP
Trigger: TGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCATGAAACTGCAAAGCTCTATAAGGCAAAGGACACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp CCTGAAACTAGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTaGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACAGTGGAA +
Preference number: 2 (lower is better)
Translates to: PETRKYFIILWEAVI*NARTTVIVLAKTVE
Trigger: TTCCACTGTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCTAGTTTCAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGTTACCTCACTCAGGATaGTATCCTCCAGATACATCC +
Preference number: 2 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVLPHSG*YPPDTS
Trigger: GGATGTATCTGGAGGATATCATCCTGAGTGAGGTAA...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTTTACCTCACTCAGGATaGTATCCTCCAGATACATCC +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCLPHSG*YPPDTS
Trigger: GGATGTATCTGGAGGATATCATCCTGAGTGAGGTAA...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTATATGGAGCAGAGAATaGAGGAAAGGCCACCTAGTC +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPIWSRE*RKGHLV
Trigger: GACTAGGTGGCCTTTCCTTCATTCTCTGCTCCATAT...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACAACTTAGAGACCATATaGAGTTTCACAAGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHNLETI*SFTRRK
Trigger: CTTCCTTCTTGTGAAACTTCATATGGTCTCTAAGTT...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTTGGATTTCTATGTGTTaGACCATCCCTGTATCCCTC +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLWISMC*TIPVSL
Trigger: GAGGGATACAGGGATGGTTCAACACATAGAAATCCA...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCAAGCTTTGCAGTTTCATaGGGTTCCATTTGTCATTTG +
Preference number: 2 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSSFAVS*GSICHL
Trigger: CAAATGACAAATGGAACCTCATGAAACTGCAAAGCT...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACAGCTTTGCAGTTTCATaGGGTTCCATTTGTCATTTG +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYSFAVS*GSICHL
Trigger: CAAATGACAAATGGAACCTCATGAAACTGCAAAGCT...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACGTTTTACGAATGCATTaGTTCTGTTCTGTGTTAGCA +
Preference number: 2 (lower is better)
Translates to: LGGCDFECQNYSNRFSQDVLRMH*FCSVLA
Trigger: TGCTAACACAGAACAGAATCAATGCATTCGTAAAAC...GTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACAATCTTGCTGGTGTATaGAATAGTGTCTGCGTTTTG +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYNLAGV*NSVCVL
Trigger: CAAAACGCAGACACTATTGCATACACCAGCAAGATT...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTCCTTTGACCCCCTTTTaGATTCTAATTGTTCTGGCT +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFPLTPF*ILIVLA
Trigger: AGCCAGAACAATTAGAATGCAAAAGGGGGTCAAAGG...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGCTGTGCACTTCCTTTTaGCCACTCTATCATATCTTC +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSLCTSF*PLYHIF
Trigger: GAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAG...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACAAAATCCCAGATATCTaGGATGTGAGAGTTTTTCTG +
Preference number: 2 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHKIPDI*DVRVFL
Trigger: CAGAAAAACTCTCACATCCCAGATATCTGGGATTTT...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTCTTTTTGTTTCCATTTaGTTGATTTCAGCCCTGAGT +
Preference number: 2 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPLFVSI*LISALS
Trigger: ACTCAGGGCTGAAATCAACCAAATGGAAACAAAAAG...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp TTCATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATaGGTGTTTTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAA +
Preference number: 2 (lower is better)
Translates to: FMRFHLSFVILELET*VFCPGKFFLCPIVQ
Trigger: TTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp TACAACAGTTTTACGAATGCATTGATTCTGTTCTGTGTTAGCATATaGGTCCTCCAGACACTGGACACAATAATCCACATTTGTCTCGTT +
Preference number: 2 (lower is better)
Translates to: YNSFTNALILFCVSI*VLQTLDTIIHICLV
Trigger: AACGAGACAAATGTGGATTATTGTGTCCAGTGTCTGGAGGACCAATATGCTAACACAGAACAGAATCAATGCATTCGTAAAACTGTTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGCACAAAATATTATCCTaGGCATACGTACATGGTATG +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGHKILS*AYVHGM
Trigger: CATACCATGTACGTATGCTCAGGATAATATTTTGTG...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTTGGATTTCTATGTGTTaGACCATCCCTGTATCCCTC +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPWISMC*TIPVSL
Trigger: GAGGGATACAGGGATGGTTCAACACATAGAAATCCA...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTCCACCCCATAAAGATTaGAATGATCTGTGTAATGTG +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFPPHKD*NDLCNV
Trigger: CACATTACACAGATCATTTCAATCTTTATGGGGTGG...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGGACAACATTTGTGGATaGTGTCATGATTTGGTTGTA +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGDNICG*CHDLVV
Trigger: TACAACCAAATCATGACATCATCCACAAATGTTGTC...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTATTCATCTGGGCATTTaGCAGAGTTCAATGTCTGGA +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLIHLGI*QSSMSG
Trigger: TCCAGACATTGAACTCTGTCAAATGCCCAGATGAAT...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAATACAACTCCAAATGTaGTTTGCTGTAGAATGCAGG +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTIQLQM*FAVECR
Trigger: CCTGCATTCTACAGCAAATCACATTTGGAGTTGTAT...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGAATGAGCATTGGAAGATaGTTTCACCCTGATCATTTC +
Preference number: 2 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRMSIGR*FHPDHF
Trigger: GAAATGATCAGGGTGAAATCATCTTCCAATGCTCAT...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGCAACTCTTTCAATGGATATTCCACTTGTCAGTGAGTaGATATCAAGTGACTTCTTT +
Preference number: 2 (lower is better)
Translates to: HPFVLAPNFVSATLSMDIPLVSE*ISSDFF
Trigger: AAAGAAGTCACTTGATATGCACTCACTGACAAGTGG...AATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAAGTTTGATTATTTCTTaGTGCCTACTCCTCTTGGGT +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTSLIIS*CLLLLG
Trigger: ACCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACT...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTCCTTTGACCCCCTTTTaGATTCTAATTGTTCTGGCT +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILAPLTPF*ILIVLA
Trigger: AGCCAGAACAATTAGAATGCAAAAGGGGGTCAAAGG...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACATGTCATATTCTTCCTaGAGTTTGTTTCTTCGGTTC +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYMSYSS*SLFLRF
Trigger: GAACCGAAGAAACAAACTGCAGGAAGAATATGACAT...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCTGTGCACTTCCTTTTaGCCACTCTATCATATCTTC +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGLCTSF*PLYHIF
Trigger: GAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGTCATCAGTCTAACTTaGGTTCCATTCCACACACAG +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPVISLT*VPFHTQ
Trigger: CTGTGTGTGGAATGGAACCCAAGTTAGACTGATGAC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCAACTTGTGTGGAAGATaGGATGGTAAGGGGAAAAGG +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFNLCGR*DGKGKR
Trigger: CCTTTTCCCCTTACCATCCCATCTTCCACACAAGTT...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCACTGAGCATACGTACATaGTATGTACTGTCTTTTAAG +
Preference number: 2 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSLSIRT*YVLSFK
Trigger: CTTAAAAGACAGTACATACCATGTACGTATGCTCAG...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGTGTTGGGTCTTTGTGTaGTTTAGGCATAAGCATAAT +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGCWVFV*FRHKHN
Trigger: ATTATGCTTATGCCTAAACCACACAAAGACCCAACA...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACCCATTTGGTTTAATATaGTCTACTGGGTTGCTGTAT +
Preference number: 2 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYPFGLI*STGLLY
Trigger: ATACAGCAACCCAGTAGACCATATTAAACCAAATGG...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTGTGACCATGAATGTGTaGGTTCATTTCTGCATCTTC +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILAVTMNV*VHFCIF
Trigger: GAAGATGCAGAAATGAACCCACACATTCATGGTCAC...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGCTGTCTTTTTACCACTaGATGGTTTTAGCTCCTTTG +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSLSFYH*MVLAPL
Trigger: CAAAGGAGCTAAAACCATCCAGTGGTAAAAAGACAG...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACACAGAGTTCAATGTCTaGACAAAATGTTTAAACCCA +
Preference number: 2 (lower is better)
Translates to: LGGCDFECQNYSNRFSQDTEFNV*TKCLNP
Trigger: TGGGTTTAAACATTTTGTCCAGACATTGAACTCTGT...GTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTTCTGTGTTAGCATATTaGTCCTCCAGACACTGGACA +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPSVLAY*SSRHWT
Trigger: TGTCCAGTGTCTGGAGGACCAATATGCTAACACAGA...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp GGAAATTGTATCTTGGTTATTCTAGGTTTCTGTGCTAAAAGCCACTaGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTA +
Preference number: 2 (lower is better)
Translates to: GNCILVILGFCAKSH*SVSAYQVTSFVIGL
Trigger: TAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTGGCTTTTAGCACAGAAACCTAGAATAACCAAGATACAATTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp ACCTGCTTCTATTTAGGTGCTTCTCACTCATTTGACATTCCTCAGTaGAGAATTCTTTGTGTAGCTTGCACCCCATTTTTAATAAGGTTA +
Preference number: 2 (lower is better)
Translates to: TCFYLGASHSFDIPQ*RILCVACTPFLIRL
Trigger: TAACCTTATTAAAAATGGGGTGCAAGCTACACAAAGAATTCTCAACTGAGGAATGTCAAATGAGTGAGAAGCACCTAAATAGAAGCAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 90 bp TTAAAGTGCATCCATTCCAGCTTTACCAGATATTCATCTGGGCATTaGACAGAGTTCAATGTCTGGACAAAATGTTTAAACCCAGAAATC +
Preference number: 2 (lower is better)
Translates to: LKCIHSSFTRYSSGH*TEFNVWTKCLNPEI
Trigger: GATTTCTGGGTTTAAACATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAATATCTGGTAAAGCTGGAATGGATGCACTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTAGTTGGTCTTCCTTCTaGATTTTCCTGTGTTTTGGA +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCSWSSF*IFLCFG
Trigger: TCCAAAACACAGGAAAATTCAGAAGGAAGACCAACT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTGCTTCTCACTCATTTaGCATTCCTCAGTTGAGAAT +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGCFSLI*HSSVEN
Trigger: ATTCTCAACTGAGGAATGTCAAATGAGTGAGAAGCA...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCCTTACATTTAGAGGCTaGGACCTCACAGTTAAAGTG +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFLTFRG*DLTVKV
Trigger: CACTTTAACTGTGAGGTCTCAGCCTCTAAATGTAAG...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCAACCATTCCAATGAGTaGTTGGATGAGCAGTTCTTC +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFNHSNE*LDEQFF
Trigger: GAAGAACTGCTCATCCAATCACTCATTGGAATGGTT...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTGAAACAAAAGATGAGTaGGATGAGCAAGATATAGGT +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFETKDE*DEQDIG
Trigger: ACCTATATCTTGCTCATCTCACTCATCTTTTGTTTC...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTATACAACTCCAAATGTaGTTTGCTGTAGAATGCAGG +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCIQLQM*FAVECR
Trigger: CCTGCATTCTACAGCAAATCACATTTGGAGTTGTAT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTCACAGTAAAATGCATTaGCTGAACCCTTGTGGCATA +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPHSKMH*LNPCGI
Trigger: TATGCCACAAGGGTTCAGTCAATGCATTTTACTGTG...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTATGAGCATTGGAAGATaGTTTCACCCTGATCATTTC +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCMSIGR*FHPDHF
Trigger: GAAATGATCAGGGTGAAATCATCTTCCAATGCTCAT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGAATCTTGCTGGTGTATaGAATAGTGTCTGCGTTTTG +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGNLAGV*NSVCVL
Trigger: CAAAACGCAGACACTATTGCATACACCAGCAAGATT...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGAAATGGATAGAAATCTaGCACTGTAATGATGTAGGT +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGKWIEI*HCNDVG
Trigger: ACCTACATCATTACAGTGGCAGATTTCTATCCATTT...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCAAGCTCCTAGCATATaGTTCTTCCAGTTTCTTTCT +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGQAPSI*FFQFLS
Trigger: AGAAAGAAACTGGAAGAAGCATATGCTAGGAGCTTG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTGGAGTTTATGGAGACTaGTCTGTAATACAGCTTAGA +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCGVYGD*SVIQLR
Trigger: TCTAAGCTGTATTACAGAGCAGTCTCCATAAACTCC...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCACAACAGTTTTACGAATaGATTGATTCTGTTCTGTGT +
Preference number: 2 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSQQFYE*IDSVLC
Trigger: ACACAGAACAGAATCAATGCATTCGTAAAACTGTTG...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGTTTCCATGTGCATTTTaGCTTTCTGTTGCTTTTGTT +
Preference number: 2 (lower is better)
Translates to: FHLSFVILELETLVFCPGFPCAF*LSVAFV
Trigger: AACAAAAGCAACAGAAAGCCAAAATGCACATGGAAA...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGATGTTGGGTCTTTGTGTaGTTTAGGCATAAGCATAAT +
Preference number: 2 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRCWVFV*FRHKHN
Trigger: ATTATGCTTATGCCTAAACCACACAAAGACCCAACA...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCTTTCCCATTGTCCTTaGGCAGATTATCAAGCTTTT +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCLSHCP*ADYQAF
Trigger: AAAAGCTTGATAATCTGCCCAAGGACAATGGGAAAG...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGAACTTAGAGACCATATaGAGTTTCACAAGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGNLETI*SFTRRK
Trigger: CTTCCTTCTTGTGAAACTTCATATGGTCTCTAAGTT...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCACAAAATATTATCCTaGGCATACGTACATGGTATG +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCHKILS*AYVHGM
Trigger: CATACCATGTACGTATGCTCAGGATAATATTTTGTG...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCAACATCCAATGATGTaGTCATGTGATGCTTTTCTA +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGQHPMM*SCDAFL
Trigger: TAGAAAAGCATCACATGATCACATCATTGGATGTTG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTTGCTTCTCACTCATTTaGCATTCCTCAGTTGAGAAT +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPCFSLI*HSSVEN
Trigger: ATTCTCAACTGAGGAATGTCAAATGAGTGAGAAGCA...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCACCACCCCATAAAGATTaGAATGATCTGTGTAATGTG +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPPPHKD*NDLCNV
Trigger: CACATTACACAGATCATTTCAATCTTTATGGGGTGG...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCAAATCTTGCTGGTGTATaGAATAGTGTCTGCGTTTTG +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPNLAGV*NSVCVL
Trigger: CAAAACGCAGACACTATTGCATACACCAGCAAGATT...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAAAATGGATAGAAATCTaGCACTGTAATGATGTAGGT +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTKWIEI*HCNDVG
Trigger: ACCTACATCATTACAGTGGCAGATTTCTATCCATTT...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGAAATGGATAGAAATCTaGCACTGTAATGATGTAGGT +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSKWIEI*HCNDVG
Trigger: ACCTACATCATTACAGTGGCAGATTTCTATCCATTT...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCCAAGCTCCTAGCATATaGTTCTTCCAGTTTCTTTCT +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFQAPSI*FFQFLS
Trigger: AGAAAGAAACTGGAAGAAGCATATGCTAGGAGCTTG...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGTGGGTTGCTGTATTTTaGTTTTACTATGTCCATGTA +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSWVAVF*FYYVHV
Trigger: TACATGGACATAGTAAAAGCAAAATACAGCAACCCA...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACACAACAGTTTTACGAATaGATTGATTCTGTTCTGTGT +
Preference number: 2 (lower is better)
Translates to: RKYFIILWEAVILNARTTQQFYE*IDSVLC
Trigger: ACACAGAACAGAATCAATGCATTCGTAAAACTGTTG...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTTCTAGAGAAAATACATaGACAAATATGGAGCAGAGA +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFSRENT*TNMEQR
Trigger: TCTCTGCTCCATATTTGTCCATGTATTTTCTCTAGA...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGTCTAGAGAAAATACATaGACAAATATGGAGCAGAGA +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSSRENT*TNMEQR
Trigger: TCTCTGCTCCATATTTGTCCATGTATTTTCTCTAGA...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTAAAATCCCAGATATCTaGGATGTGAGAGTTTTTCTG +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILAKIPDI*DVRVFL
Trigger: CAGAAAAACTCTCACATCCCAGATATCTGGGATTTT...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTCTGAGCATACGTACATaGTATGTACTGTCTTTTAAG +
Preference number: 2 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLLSIRT*YVLSFK
Trigger: CTTAAAAGACAGTACATACCATGTACGTATGCTCAG...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGCTGAATTTATTAATTTaGATACTGTCACTGTGCCCT +
Preference number: 2 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSLNLLI*ILSLCP
Trigger: AGGGCACAGTGACAGTATCCAAATTAATAAATTCAG...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTCTGAATTTATTAATTTaGATACTGTCACTGTGCCCT +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFLNLLI*ILSLCP
Trigger: AGGGCACAGTGACAGTATCCAAATTAATAAATTCAG...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTTGCTTTCGGCAAGATaGCCCATTTTACTATATAGA +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILALLSAR*PILLYR
Trigger: TCTATATAGTAAAATGGGCCATCTTGCCGAAAGCAA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTACCAGATATTCATCTaGGCATTTGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILAYQIFI*AFDRVQ
Trigger: TTGAACTCTGTCAAATGCCCAGATGAATATCTGGTA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTTACTTCATCATTCTTTaGGAGGCTGTGATTTTGAAT +
Preference number: 2 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFYFIIL*EAVILN
Trigger: ATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTA...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCAACTTAGAGACCATATaGAGTTTCACAAGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFNLETI*SFTRRK
Trigger: CTTCCTTCTTGTGAAACTTCATATGGTCTCTAAGTT...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTCAACATCCAATGATGTaGTCATGTGATGCTTTTCTA +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPQHPMM*SCDAFL
Trigger: TAGAAAAGCATCACATGATCACATCATTGGATGTTG...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCAGACAACATTTGTGGATaGTGTCATGATTTGGTTGTA +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPDNICG*CHDLVV
Trigger: TACAACCAAATCATGACATCATCCACAAATGTTGTC...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGATAAATGTACCTGTTaGCCATTTGGAAAGTATGGA +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPDKCTC*PFGKYG
Trigger: TCCATACTTTCCAAATGGTCAACAGGTACATTTATC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTGGGTTGCTGTATTTTaGTTTTACTATGTCCATGTA +
Preference number: 2 (lower is better)
Translates to: FSSLTKSSLSRISMCILAWVAVF*FYYVHV
Trigger: TACATGGACATAGTAAAAGCAAAATACAGCAACCCA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCAATGTCATATTCTTCCTaGAGTTTGTTTCTTCGGTTC +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPMSYSS*SLFLRF
Trigger: GAACCGAAGAAACAAACTGCAGGAAGAATATGACAT...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTAAGTTCCTTTCCATTTaGTTTAATATGGTCTACTGG +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCKFLSI*FNMVYW
Trigger: CCAGTAGACCATATTAAACCAAATGGAAAGGAACTT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTATCAGATGCAGGCTTaGAAAAGATCTTTTTGCAAT +
Preference number: 2 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGYQMQA*KRSFCN
Trigger: ATTGCAAAAAGATCTTTTCCAAGCCTGCATCTGATA...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTACAGAGTTCAATGTCTaGACAAAATGTTTAAACCCA +
Preference number: 2 (lower is better)
Translates to: MRFHLSFVILELETLVFCTEFNV*TKCLNP
Trigger: TGGGTTTAAACATTTTGTCCAGACATTGAACTCTGT...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCATACCAGATATTCATCTaGGCATTTGACAGAGTTCAA +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPYQIFI*AFDRVQ
Trigger: TTGAACTCTGTCAAATGCCCAGATGAATATCTGGTA...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR GCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTTCCAAACTTTGTCTCTaGAACTCTTTCAATGGATAT +
Preference number: 2 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPSKLCL*NSFNGY
Trigger: ATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGA...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCTTTCCATGTGCATTTTaGCTTTCTGTTGCTTTTGTT +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFFPCAF*LSVAFV
Trigger: AACAAAAGCAACAGAAAGCCAAAATGCACATGGAAA...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCACTGAATTTATTAATTTaGATACTGTCACTGTGCCCT +
Preference number: 2 (lower is better)
Translates to: PVYPLRRGRLLICLILYPLNLLI*ILSLCP
Trigger: AGGGCACAGTGACAGTATCCAAATTAATAAATTCAG...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCGCACATACAATAACTTaGATGAGAATACAAATGGGA +
Preference number: 2 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFAHTIT*MRIQMG
Trigger: TCCCATTTGTATTCTCATCCAAGTTATTGTATGTGC...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TGCGTTTTGTGGCTTATTATGGGATGGACCCCAGTGTaGGGCAGTGTCTGGATGGTCCATCCTTTCGTCTTA +
Preference number: 3 (lower is better)
Translates to: CVLWLIMGWTPV*GSVWMVHPFVL
Trigger: TAAGACGAAAGGATGGACCATCCAGACACTGCCCCACACTGGGGTCCATCCCATAATAAGCCACAAAACGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp AGATCCAGGACCACATTCAGCACTGCACACCGAAGTTaGCACCTGTGCACTTCCTTTTGCCCACTCTATCAT +
Preference number: 3 (lower is better)
Translates to: RSRTTFSTAHRS*HLCTSFCPLYH
Trigger: ATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTGCTGAATGTGGTCCTGGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGGGGGGAAGGACGAACTaGTGTGGAAGATGGGATGGT +
Preference number: 3 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEGGRTN*CGRWDG
Trigger: ACCATCCCATCTTCCACACAAGTTCGTCCTTCCCCC...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp CTTATTATGGGATGGACCCCAGTGTGGGGCAGTGTCTaGATGGTCCATCCTTTCGTCTTAGCTCCAAACTTT +
Preference number: 3 (lower is better)
Translates to: LIMGWTPVWGSV*MVHPFVLAPNF
Trigger: AAAGTTTGGAGCTAAGACGAAAGGATGGACCATCCAGACACTGCCCCACACTGGGGTCCATCCCATAATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGGCCACTTTGCTGAAGTaGTTTACTAGGTTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: NDVGWGQRETPRKSQISGATLLK*FTRFRS
Trigger: GCTCCTAAACCTAGTAAACAACTTCAGCAAAGTGGC...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp ACCACATTCAGCACTGCACACCGAAGTTGGCACCTGTaGACTTCCTTTTGCCCACTCTATCATATCTTCAGA +
Preference number: 3 (lower is better)
Translates to: TTFSTAHRSWHL*TSFCPLYHIFR
Trigger: TCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTGCTGAATGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGCCAATTTATGTCCCTTaGACCCCCTTTTGCATTCTA +
Preference number: 3 (lower is better)
Translates to: NDVGWGQRETPRKSQISGPIYVP*TPFCIL
Trigger: TAGAATGCAAAAGGGGGTCAAAGGGACATAAATTGG...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACGGGGGAAGGACGAACTaGTGTGGAAGATGGGATGGT +
Preference number: 3 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYGGRTN*CGRWDG
Trigger: ACCATCCCATCTTCCACACAAGTTCGTCCTTCCCCC...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGTTGACCAAGTCATCATaGAGTAGAATTTCCATGTGC +
Preference number: 3 (lower is better)
Translates to: NDVGWGQRETPRKSQISGLTKSS*SRISMC
Trigger: GCACATGGAAATTCTACTCAATGATGACTTGGTCAA...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGTCTTTTTGTTTCCATTaGGTTGATTTCAGCCCTGAG +
Preference number: 3 (lower is better)
Translates to: NDVGWGQRETPRKSQISGSFCFH*VDFSPE
Trigger: CTCAGGGCTGAAATCAACCAAATGGAAACAAAAAGA...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGATGTTATCCCCTTTCCTaGTTTCGCCTCTGGAAACAC +
Preference number: 3 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRCYPLS*FRLWKH
Trigger: GTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACA...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TGTTTCAAATGTTATCCCCTTTCCTTGTTTCGCCTCTaGAAACACCCCTTCCATCTCCTTCCACCTGCTTCT +
Preference number: 3 (lower is better)
Translates to: CFKCYPLSLFRL*KHPFHLLPPAS
Trigger: AGAAGCAGGTGGAAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTTGAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AGCACTGCACACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATCCTGTGTTTTGGAAATaGTATCTTGGTTATTCTAGG +
Preference number: 3 (lower is better)
Translates to: STAHRSWHLCTSFCPLYHPVFWK*YLGYSR
Trigger: CCTAGAATAACCAAGATACAATTTCCAAAACACAGG...ATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGTTCTTCTTTTCTTCCTaGACCAAGTCATCATTGAGT +
Preference number: 3 (lower is better)
Translates to: NDVGWGQRETPRKSQISGFFFSS*TKSSLS
Trigger: ACTCAATGATGACTTGGTCAAGGAAGAAAAGAAGAA...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTCCTGTGCACTTCCTTTaGCCCACTCTATCATATCTT +
Preference number: 3 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLPVHFL*PTLSYL
Trigger: AAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGG...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp GTTCTGTTATTGGCCTTAACAATTGGAGTACTGTGGTaGTTCACCATGACCCCGAGAACCACAGTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: VLLLALTIGVLW*FTMTPRTTVVN
Trigger: ATTCACAACTGTGGTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGTTAAGGCCAATAACAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp GTGGCATACGATGATGATCTGTCCATGCTCAGAATGTaGATCAATATCAACAGAAGGAGGAGAAGCTCTCAG +
Preference number: 3 (lower is better)
Translates to: VAYDDDLSMLRM*ININRRRRSSQ
Trigger: CTGAGAGCTTCTCCTCCTTCTGTTGATATTGATGCACATTCTGAGCATGGACAGATCATCATCGTATGCCAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp AAATGGATAGAAATCTGCCACTGTAATGATGTAGGTTaGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATA +
Preference number: 3 (lower is better)
Translates to: KWIEICHCNDVG*GQRETPRKSQI
Trigger: TATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATTACAGTGGCAGATTTCTATCCATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp GATATAGGTGAGAGTTCTGTTATTGGCCTTAACAATTaGAGTACTGTGGTGCTTCACCATGACCCCGAGAAC +
Preference number: 3 (lower is better)
Translates to: DIGESSVIGLNN*STVVLHHDPEN
Trigger: GTTCTCGGGGTCATGGTGAAGCACCACAGTACTCCAATTGTTAAGGCCAATAACAGAACTCTCACCTATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGCAGCCTGTTTATCCTTaGAGGAGAGGAAGGCTACTG +
Preference number: 3 (lower is better)
Translates to: FHLSFVILELETLVFCPGQPVYP*RRGRLL
Trigger: CAGTAGCCTTCCTCTCCTCAAAGGATAAACAGGCTG...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp TGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTaGCCTACCTGGCTGTCTTTGTACCAGTACCATGGA +
Preference number: 3 (lower is better)
Translates to: CGFISASSILLH*PTWLSLYQYHG
Trigger: TCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp AGCCAAGTATCCCAGAACACAGTAAAATGCATTGACTaGACCCTTGTGGCATACGATGATGATCTGTCCATG +
Preference number: 3 (lower is better)
Translates to: SQVSQNTVKCID*TLVAYDDDLSM
Trigger: CATGGACAGATCATCATCGTATGCCACAAGGGTTCAGTCAATGCATTTTACTGTGTTCTGGGATACTTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp ACTGAACCCTTGTGGCATACGATGATGATCTGTCCATaGTCAGAATGTGCATCAATATCAACAGAAGGAGGA +
Preference number: 3 (lower is better)
Translates to: TEPLWHTMMICP*SECASISTEGG
Trigger: TCCTCCTTCTGTTGATATTGATGCACATTCTGAGCATGGACAGATCATCATCGTATGCCACAAGGGTTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACGAGTTTGATTATTTCTaGCTGCCTACTCCTCTTGGG +
Preference number: 3 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHEFDYF*LPTPLG
Trigger: CCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACTC...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGATTTGTTTCCATTTGGTaGATTTCAGCCCTGAGTTTG +
Preference number: 3 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRFVSIW*ISALSL
Trigger: CAAACTCAGGGCTGAAATCAACCAAATGGAAACAAA...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTTTTGTTTCCATTTGGTaGATTTCAGCCCTGAGTTTG +
Preference number: 3 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLFVSIW*ISALSL
Trigger: CAAACTCAGGGCTGAAATCAACCAAATGGAAACAAA...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTCTTTTTGTTTCCATTaGGTTGATTTCAGCCCTGAG +
Preference number: 3 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMESFCFH*VDFSPE
Trigger: CTCAGGGCTGAAATCAACCAAATGGAAACAAAAAGA...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTTTATATCCAGCCACTTaGCTGAAGTTGTTTACTAGG +
Preference number: 3 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLLYPAT*LKLFTR
Trigger: CCTAGTAAACAACTTCAGCAAAGTGGCTGGATATAA...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACTGTTATCCCCTTTCCTaGTTTCGCCTCTGGAAACAC +
Preference number: 3 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYCYPLS*FRLWKH
Trigger: GTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACA...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp CTGTCTTTGTACCAGTACCATGGAGTTTATGGAGACTaGTCTGTAATACAGCTTAGAGTCAGGGATAGAGAT +
Preference number: 3 (lower is better)
Translates to: LSLYQYHGVYGD*SVIQLRVRDRD
Trigger: ATCTCTATCCCTGACTCTAAGCTGTATTACAGAGCAGTCTCCATAAACTCCATGGTACTGGTACAAAGACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp GTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTaGGTTACCTCACTCAGGATGATATCCTCCAGATAC +
Preference number: 3 (lower is better)
Translates to: VSECISSDFFCD*VTSLRMISSRY
Trigger: GTATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTTTTCTGTTGCTTTTGTaGTTATTGAAGACCAGCCTT +
Preference number: 3 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLFLLLL*LLKTSL
Trigger: AAGGCTGGTCTTCAATAACAACAAAAGCAACAGAAA...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAGTTCTGGCTACAACTTaGAGTACTATATTGAGTAGA +
Preference number: 3 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRVLATT*STILSR
Trigger: TCTACTCAATATAGTACTCAAAGTTGTAGCCAGAAC...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTGTTCTGGCTACAACTTaGAGTACTATATTGAGTAGA +
Preference number: 3 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLVLATT*STILSR
Trigger: TCTACTCAATATAGTACTCAAAGTTGTAGCCAGAAC...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGGCCACTTTGCTGAAGTaGTTTACTAGGTTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: FHLSFVILELETLVFCPGATLLK*FTRFRS
Trigger: GCTCCTAAACCTAGTAAACAACTTCAGCAAAGTGGC...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTGCTACCCTAGGTTTTaGTTATTCCAAATGAACTTG +
Preference number: 3 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMECYPRF*LFQMNL
Trigger: CAAGTTCATTTGGAATAACAAAAACCTAGGGTAGCA...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTAATCTCACTATGGTGTaGTCCAAAAGCAAAAGTCCC +
Preference number: 3 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPNLTMV*SKSKSP
Trigger: GGGACTTTTGCTTTTGGACAACACCATAGTGAGATT...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp TCGTTAGAAATTTCATTTTCAGGACAGGGTTTGCAATaGAAACAGCATGCTGCCATTCCGTCCATCCTGAAT +
Preference number: 3 (lower is better)
Translates to: SLEISFSGQGLQ*KQHAAIPSILN
Trigger: ATTCAGGATGGACGGAATGGCAGCATGCTGTTTTCATTGCAAACCCTGTCCTGAAAATGAAATTTCTAACGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp AAAGATCAAGTGACCATGAATGTGTGGGTTCATTTCTaGATCTTCAATTCTACTCCATTGACCTACCTGGCT +
Preference number: 3 (lower is better)
Translates to: KDQVTMNVWVHF*IFNSTPLTYLA
Trigger: AGCCAGGTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGTCACTTGATCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp GCAGGCTTGGAAAAGATCTTTTTGCAATCTGTAGGTTaGTGTGTTGTCTTATTGACAGTGTCCTTTGCCTTA +
Preference number: 3 (lower is better)
Translates to: AGLEKIFLQSVG*CVVLLTVSFAL
Trigger: TAAGGCAAAGGACACTGTCAATAAGACAACACAGCAACCTACAGATTGCAAAAAGATCTTTTCCAAGCCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TTCATATTTACTCTGTCCCCAACAGGATTAGTGAACTaGGTCTTTCTCAGAAAGGAATACAGCTTCTTGCAG +
Preference number: 3 (lower is better)
Translates to: FIFTLSPTGLVN*VFLRKEYSFLQ
Trigger: CTGCAAGAAGCTGTATTCCTTTCTGAGAAAGACCCAGTTCACTAATCCTGTTGGGGACAGAGTAAATATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CACCAAACTCTGACACTATTATTGATGCCATGTTGTTCTTGTAGACAGGAGCCTTTGCTTTTGTTGTTATaGAAGACCAGCCTTAGTCCA +
Preference number: 3 (lower is better)
Translates to: HQTLTLLLMPCCSCRQEPLLLLL*KTSLSP
Trigger: TGGACTAAGGCTGGTCTTCAATAACAACAAAAGCAA...AGGCTCCTGTCTACAAGAACAACATGGCATCAATAATAGTGTCAGAGTTTGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGATGCTGCCTACTCCTCTaGGGTTTATTTGCTTCCTTT +
Preference number: 3 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRCCLLL*GLFASF
Trigger: AAAGGAAGCAAATAAACCCAAGAGGAGTAGGCAGCA...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGTTTTCCTCTGCCCAATaGTTCAAGGTTTTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: FHLSFVILELETLVFCPGFSSAQ*FKVFLH
Trigger: GTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAA...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCACTCATTGGAATCATGTaGACAAAGGCAAAGCAGACT +
Preference number: 3 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSLIGIM*TKAKQT
Trigger: AGTCTGCTTTGCCTTTGTCAACATGATTCCAATGAG...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CATAGTCTCTGTATTCCTAGAGATTCCCACATTCTAAAGCTCACAGCTAAGGTACTCATTGGAATCATGTaGACAAAGGCAAAGCAGACT +
Preference number: 3 (lower is better)
Translates to: HSLCIPRDSHILKLTAKVLIGIM*TKAKQT
Trigger: AGTCTGCTTTGCCTTTGTCAACATGATTCCAATGAG...TACCTTAGCTGTGAGCTTTAGAATGTGGGAATCTCTAGGAATACAGAGACTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACTTTCTGTTGCTTTTGTaGTTATTGAAGACCAGCCTT +
Preference number: 3 (lower is better)
Translates to: LGGCDFECQNYSNRFSQDFLLLL*LLKTSL
Trigger: AAGGCTGGTCTTCAATAACAACAAAAGCAACAGAAA...GTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGGCTTTCTGTTGCTTTaGTTGTTATTGAAGACCAGC +
Preference number: 3 (lower is better)
Translates to: RKYFIILWEAVILNARTTGFLLL*LLLKTS
Trigger: GCTGGTCTTCAATAACAACAAAAGCAACAGAAAGCC...TGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTGGGAGGCTGTGATTTTGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACTTCTTCTTTTCTTCCTaGACCAAGTCATCATTGAGT +
Preference number: 3 (lower is better)
Translates to: LGGCDFECQNYSNRFSQDFFFSS*TKSSLS
Trigger: ACTCAATGATGACTTGGTCAAGGAAGAAAAGAAGAA...GTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTGCTGCCTACTCCTCTaGGGTTTATTTGCTTCCTTT +
Preference number: 3 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGCCLLL*GLFASF
Trigger: AAAGGAAGCAAATAAACCCAAGAGGAGTAGGCAGCA...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTGCTGCCTACTCCTCTaGGGTTTATTTGCTTCCTTT +
Preference number: 3 (lower is better)
Translates to: FSSLTKSSLSRISMCILACCLLL*GLFASF
Trigger: AAAGGAAGCAAATAAACCCAAGAGGAGTAGGCAGCA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp TTCCACCTGCTTCTATTTAGGTGCTTCTCACTCATTTaGCATTCCTCAGTTGAGAATTCTTTGTGTAGCTTG +
Preference number: 3 (lower is better)
Translates to: FHLLLFRCFSLI*HSSVENSLCSL
Trigger: CAAGCTACACAAAGAATTCTCAACTGAGGAATGTCAAATGAGTGAGAAGCACCTAAATAGAAGCAGGTGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp GTAAGGAAAGTGCCATCCCCAGTGGTTCTTCATAGCTaGGAAATACAACAGTTTTACGAATGCATTGATTCT +
Preference number: 3 (lower is better)
Translates to: VRKVPSPVVLHS*EIQQFYECIDS
Trigger: AGAATCAATGCATTCGTAAAACTGTTGTATTTCTCAGCTATGAAGAACCACTGGGGATGGCACTTTCCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp AAAGTGCATCCATTCCAGCTTTACCAGATATTCATCTaGGCATTTGACAGAGTTCAATGTCTGGACAAAATG +
Preference number: 3 (lower is better)
Translates to: KVHPFQLYQIFI*AFDRVQCLDKM
Trigger: CATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAATATCTGGTAAAGCTGGAATGGATGCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp ATTGCCCCTGAAACTAGAAAGTACTTCATCATTCTTTaGGAGGCTGTGATTTTGAATGCCAGAACTACAGTA +
Preference number: 3 (lower is better)
Translates to: IAPETRKYFIIL*EAVILNARTTV
Trigger: TACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCTAGTTTCAGGGGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGAGTTTGATTATTTCTaGCTGCCTACTCCTCTTGGG +
Preference number: 3 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPEFDYF*LPTPLG
Trigger: CCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACTC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGATTTCAGCCCTGAGTTaGATTATTTCTTGCTGCCTA +
Preference number: 3 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSISALS*IISCCL
Trigger: TAGGCAGCAAGAAATAATCAAACTCAGGGCTGAAAT...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGATCTTTTTGTTTCCATTaGGTTGATTTCAGCCCTGAG +
Preference number: 3 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRSFCFH*VDFSPE
Trigger: CTCAGGGCTGAAATCAACCAAATGGAAACAAAAAGA...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACCATGTGGGAGAATTTaGATGACTGATTCTAGTTCT +
Preference number: 3 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRPCGRI*MTDSSS
Trigger: AGAACTAGAATCAGTCATCAAAATTCTCCCACATGG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGTACTTTGTTGGGTCTTaGTGTGGTTTAGGCATAAGC +
Preference number: 3 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVYFVGS*CGLGIS
Trigger: GCTTATGCCTAAACCACACAAAGACCCAACAAAGTA...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAATTTATGTCCCTTaGACCCCCTTTTGCATTCTA +
Preference number: 3 (lower is better)
Translates to: MRFHLSFVILELETLVFCPIYVP*TPFCIL
Trigger: TAGAATGCAAAAGGGGGTCAAAGGGACATAAATTGG...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGCCACTTTGCTGAAGTaGTTTACTAGGTTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPATLLK*FTRFRS
Trigger: GCTCCTAAACCTAGTAAACAACTTCAGCAAAGTGGC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGTGCTACCCTAGGTTTTaGTTATTCCAAATGAACTTG +
Preference number: 3 (lower is better)
Translates to: FHLSFVILELETLVFCPGCYPRF*LFQMNL
Trigger: CAAGTTCATTTGGAATAACAAAAACCTAGGGTAGCA...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTTCAATTCTACTCCATaGACCTACCTGGCTGTCTTT +
Preference number: 3 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGFNSTP*TYLAVF
Trigger: AAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAA...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCAAACCATCACCATGTGTaGAAAATGCTGTCTTTTTAC +
Preference number: 3 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSNHHHV*KMLSFY
Trigger: GTAAAAAGACAGCATTTTCAACACATGGTGATGGTT...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTTTTCCTCTGCCCAATaGTTCAAGGTTTTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: FSSLTKSSLSRISMCILAFSSAQ*FKVFLH
Trigger: GTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTTGCTGTGTTGTCTTATaGACAGTGTCCTTTGCCTTA +
Preference number: 3 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLCCVVL*TVSFAL
Trigger: TAAGGCAAAGGACACTGTCAATAAGACAACACAGCA...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp CATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTaGGACATTGGTGTTTTGTCCAGGGAAATTTTTCCT +
Preference number: 3 (lower is better)
Translates to: HEVPFVICDLRA*DIGVLSREIFP
Trigger: AGGAAAAATTTCCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp TGTCTTATTGACAGTGTCCTTTGCCTTATAGAGCTTTaGAGTTTCATGAGGTTCCATTTGTCATTTGTGATC +
Preference number: 3 (lower is better)
Translates to: CLIDSVLCLIEL*SFMRFHLSFVI
Trigger: GATCACAAATGACAAATGGAACCTCATGAAACTGCAAAGCTCTATAAGGCAAAGGACACTGTCAATAAGACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TGTTTACTAGGTTTAGGAGCTCTCTGGTGGAATTTCTaGGGTCTCATAAGTATGCTATCATATCATCTACAA +
Preference number: 3 (lower is better)
Translates to: CLLGLGALWWNF*GLISMLSYHLQ
Trigger: TTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCAGAGAGCTCCTAAACCTAGTAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp ATATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGCCTGTGTTTTGGAAATaGTATCTTGGTTATTCTAGG +
Preference number: 3 (lower is better)
Translates to: ILDYIDGFLCVEPSLYPSPVFWK*YLGYSR
Trigger: CCTAGAATAACCAAGATACAATTTCCAAAACACAGG...CGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACCTGTGTTTTGGAAATaGTATCTTGGTTATTCTAGG +
Preference number: 3 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRPVFWK*YLGYSR
Trigger: CCTAGAATAACCAAGATACAATTTCCAAAACACAGG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTTGCTTTTGTTGTTATaGAAGACCAGCCTTAGTCCA +
Preference number: 3 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGLLLLL*KTSLSP
Trigger: TGGACTAAGGCTGGTCTTCAATAACAACAAAAGCAA...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTTTGCTTTTGTTGTTATaGAAGACCAGCCTTAGTCCA +
Preference number: 3 (lower is better)
Translates to: FSSLTKSSLSRISMCILALLLLL*KTSLSP
Trigger: TGGACTAAGGCTGGTCTTCAATAACAACAAAAGCAA...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGATTTCAGCCCTGAGTTaGATTATTTCTTGCTGCCTA +
Preference number: 3 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVISALS*IISCCL
Trigger: TAGGCAGCAAGAAATAATCAAACTCAGGGCTGAAAT...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCTACTTTGTTGGGTCTTaGTGTGGTTTAGGCATAAGC +
Preference number: 3 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFYFVGS*CGLGIS
Trigger: GCTTATGCCTAAACCACACAAAGACCCAACAAAGTA...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTTTATATCCAGCCACTTaGCTGAAGTTGTTTACTAGG +
Preference number: 3 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLLYPAT*LKLFTR
Trigger: CCTAGTAAACAACTTCAGCAAAGTGGCTGGATATAA...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTTTTTCCTCTGCCCAATaGTTCAAGGTTTTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPFSSAQ*FKVFLH
Trigger: GTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAA...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACAGATTATCAAGCTTTaGAAAAGCTATCTGATGGAG +
Preference number: 3 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRQIIKL*KSYLME
Trigger: CTCCATCAGATAGCTTTTCAAAAGCTTGATAATCTG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp ATAGTTTTTGCTACCCTAGGTTTTTGTTATTCCAAATaGACTTGCAAGTTGCTCTTTCTAAGACCAGGAGGA +
Preference number: 3 (lower is better)
Translates to: IVFATLGFCYSK*TCKLLFLRPGG
Trigger: TCCTCCTGGTCTTAGAAAGAGCAACTTGCAAGTTCATTTGGAATAACAAAAACCTAGGGTAGCAAAAACTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TTGAGCTTTGTTCAAAGAGATAAGAATCGATCAATTTaGATTCATATACATGCTGACCTCCAGGTCAACCAT +
Preference number: 3 (lower is better)
Translates to: LSFVQRDKNRSI*IHIHADLQVNH
Trigger: ATGGTTGACCTGGAGGTCAGCATGTATATGAATCCAAATTGATCGATTCTTATCTCTTTGAACAAAGCTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TCTTGCAGCTATAATTGTGTTCTTTCCCATTGTCCTTaGGCAGATTATCAAGCTTTTGAAAAGCTATCTGAT +
Preference number: 3 (lower is better)
Translates to: SCSYNCVLSHCP*ADYQAFEKLSD
Trigger: ATCAGATAGCTTTTCAAAAGCTTGATAATCTGCCCAAGGACAATGGGAAAGAACACAATTATAGCTGCAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTTTCTTCTTTTCTTCCTaGACCAAGTCATCATTGAGT +
Preference number: 3 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLFFFSS*TKSSLS
Trigger: ACTCAATGATGACTTGGTCAAGGAAGAAAAGAAGAA...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTATATGGTCTACTGGGTaGCTGTATTTTGCTTTTACT +
Preference number: 3 (lower is better)
Translates to: FSSLTKSSLSRISMCILAIWSTG*LYFAFT
Trigger: AGTAAAAGCAAAATACAGCAACCCAGTAGACCATAT...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCTTCTGAGATCTTCTTaGATTTCATTCTTCATAGGC +
Preference number: 3 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGLLRSS*ISFFIG
Trigger: GCCTATGAAGAATGAAATCAAAGAAGATCTCAGAAG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCATCTGAATTTATTAATTaGGATACTGTCACTGTGCCC +
Preference number: 3 (lower is better)
Translates to: PVYPLRRGRLLICLILYPSEFIN*DTVTVP
Trigger: GGGCACAGTGACAGTATCCAAATTAATAAATTCAGA...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR-3UTR CAA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTATATGGTCTACTGGGTaGCTGTATTTTGCTTTTACT +
Preference number: 3 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPIWSTG*LYFAFT
Trigger: AGTAAAAGCAAAATACAGCAACCCAGTAGACCATAT...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR TCA 72 bp TCTGTTGTTACTCGGAAGTCCTCGATCTATTTCGATTaGGCTTTGTTCAAAGAGATAAGAATCGATCAATTT +
Preference number: 3 (lower is better)
Translates to: SVVTRKSSIYFD*ALFKEIRIDQF
Trigger: AAATTGATCGATTCTTATCTCTTTGAACAAAGCTCAATCGAAATAGATCGAGGACTTCCGAGTAACAACAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR GCA 72 bp TTTGACATTCCTCAGTTGAGAATTCTTTGTGTAGCTTaGACCCCATTTTTAATAAGGTTATTTGGTTCTCTG +
Preference number: 3 (lower is better)
Translates to: FDIPQLRILCVA*TPFLIRLFGSL
Trigger: CAGAGAACCAAATAACCTTATTAAAAATGGGGTGCAAGCTACACAAAGAATTCTCAACTGAGGAATGTCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CCA 72 bp TGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATaGTCTACTGGGTTGCTGTATTTTGCTTTTACTATG +
Preference number: 3 (lower is better)
Translates to: WIASSSFPFGLI*STGLLYFAFTM
Trigger: CATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR GCA 90 bp AGTAGCTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAACGAAGTTGGCACCTGTaGACTTCCTTTTGCCCACTC +
Preference number: 4 (lower is better)
Translates to: SSSPRSPMVGWAHTPIFKRSWHL*TSFCPL
Trigger: GAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCG...TTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAGCTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR GCA 90 bp CTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAAATTTTGACCACATTCAGCACTaGACACCGAAGTTGGCACCT +
Preference number: 4 (lower is better)
Translates to: LPKVSNGGMGPHTHLQNFDHIQH*TPKLAP
Trigger: AGGTGCCAACTTCGGTGTGCAGTGCTGAATGTGGTC...AAAATTTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGCCAGCATCCCTGCACTaGAGGCCAAAATGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: NDVGWGQRETPRKSQISGPASLH*RPKWRR
Trigger: TCTTCTCCATTTTGGCCTCCAGTGCAGGGATGCTGG...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR GCA 90 bp AATGATGTAGGTTGGGGGCAGCGGGAGACTCCTAGAAAATCCCAGATATCTGGGATTGGAGTACTGTGGTaGTTCACCATGACCCCGAGA +
Preference number: 4 (lower is better)
Translates to: NDVGWGQRETPRKSQISGIGVLW*FTMTPR
Trigger: TCTCGGGGTCATGGTGAAGCACCACAGTACTCCAAT...CCCAGATATCTGGGATTTTCTAGGAGTCTCCCGCTGCCCCCAACCTACATCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp AGCACTGCACACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATGGCCGTTGTACTGCATaGATCATGAAGGTGCATTCT +
Preference number: 4 (lower is better)
Translates to: STAHRSWHLCTSFCPLYHGRCTA*IMKVHS
Trigger: AGAATGCACCTTCATGATTCATGCAGTACAACGGCC...ATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR GCA 90 bp AGTAGCTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAATTTCAGGACAGGGTTTaGAATGAAAACAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: SSSPRSPMVGWAHTPIFKFQDRV*NENSML
Trigger: CAGCATGCTGTTTTCATTGCAAACCCTGTCCTGAAA...TTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAGCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp ACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTTATGGAGAGCAGGTGGCTGCATTTaGATGGCCAATGAAGAGCAA +
Preference number: 4 (lower is better)
Translates to: TPLTYLAVFVPVPWSLWRAGGCI*MANEEQ
Trigger: TTGCTCTTCATTGGCCATCCAAATGCAGCCACCTGC...TCTCCATAAACTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGGGCCGTTGTACTGCATaGATCATGAAGGTGCATTCT +
Preference number: 4 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEGRCTA*IMKVHS
Trigger: AGAATGCACCTTCATGATTCATGCAGTACAACGGCC...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR GCA 90 bp AGTAGCTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAACAACAGTTTTACGAATaGATTGATTCTGTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: SSSPRSPMVGWAHTPIFKQQFYE*IDSVLC
Trigger: ACACAGAACAGAATCAATGCATTCGTAAAACTGTTG...TTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAGCTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACCGAGAACCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 4 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHREPQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGGTTCTCG...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp CACCGAAGTTGGCACCTGTGCACTTCCTTTTGCCCACTCTATCATATCTTCAGAATCAGACACAAGAAGTaGAATGTTCAGGAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: HRSWHLCTSFCPLYHIFRIRHKK*NVQEPE
Trigger: TTCTGGCTCCTGAACATTCCACTTCTTGTGTCTGAT...TCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR CCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGAAGTGCCATCCCCAGTaGTTCTTCATAGCTGAGAAA +
Preference number: 4 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEKCHPQ*FFIAEK
Trigger: TTTCTCAGCTATGAAGAACCACTGGGGATGGCACTT...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
3UTR CAA 72 bp GTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATaGACCTACCTGGCTGTCTTTGTACCAGTACCATGG +
Preference number: 4 (lower is better)
Translates to: VWVHFCIFNSTP*TYLAVFVPVPW
Trigger: CCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp CACTGCACACCGAAGTTGGCACCTGTGCACTTCCTTTaGCCCACTCTATCATATCTTCAGATAAATGTACCT +
Preference number: 4 (lower is better)
Translates to: HCTPKLAPVHFL*PTLSYLQINVP
Trigger: AGGTACATTTATCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGGTGCCAACTTCGGTGTGCAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACGGACAGGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 4 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHGQGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCCTGTCC...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp CTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAAATTTTTACTTCATCATTCTTTaGGAGGCTGTGATTTTGAAT +
Preference number: 4 (lower is better)
Translates to: LPKVSNGGMGPHTHLQNFYFIIL*EAVILN
Trigger: ATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTA...AAAATTTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGACAGGATTAGTGAACTaGGTCTTTCTCAGAAAGGAA +
Preference number: 4 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMETGLVN*VFLRKE
Trigger: TTCCTTTCTGAGAAAGACCCAGTTCACTAATCCTGT...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACACTGGAGGCCAAAATaGAGAAGATCTCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRHWRPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCATTTTGGCCTCCAGTG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
3UTR CAA 72 bp TTCTTTCCCATTGTCCTTGGGCAGATTATCAAGCTTTaGAAAAGCTATCTGATGGAGTGCATGGGCAAAAGC +
Preference number: 4 (lower is better)
Translates to: FFPIVLGQIIKL*KSYLMECMGKS
Trigger: GCTTTTGCCCATGCACTCCATCAGATAGCTTTTCAAAAGCTTGATAATCTGCCCAAGGACAATGGGAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGCAACTCTTTCAATGGATATTGGCCGTTGTACTGCATaGATCATGAAGGTGCATTCT +
Preference number: 4 (lower is better)
Translates to: HPFVLAPNFVSATLSMDIGRCTA*IMKVHS
Trigger: AGAATGCACCTTCATGATTCATGCAGTACAACGGCC...AATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGCATCATTGTCTGAGATaGCCAACCCTACCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGHHCLR*PTLPSS
Trigger: GGAACTGGGTAGGGTTGGTCATCTCAGACAATGATG...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACCTTACATTTAGAGGCTaGGACCTCACAGTTAAAGTG +
Preference number: 4 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHLTFRG*DLTVKV
Trigger: CACTTTAACTGTGAGGTCTCAGCCTCTAAATGTAAG...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGGCTGTAGAATGCAGGTaGCTGCATTTGGATGGCCAA +
Preference number: 4 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVAVECR*LHLDGQ
Trigger: TTGGCCATCCAAATGCAGCCACCTGCATTCTACAGC...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTAAATTCCATTTGGATGGCCAATaGAGAGCAAAGGGCAGAGGA +
Preference number: 4 (lower is better)
Translates to: LLGCCILLLLCPCIHLKFHLDGQ*RAKGRG
Trigger: TCCTCTGCCCTTTGCTCTTCATTGGCCATCCAAATG...GAATTTAAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR GCA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTTTCTTGTCTTCATTCTaGTTTATCTTCCAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLFLSSF*FIFQKH
Trigger: GTGCTTTTGGAAGATAAAGCAGAATGAAGACAAGAA...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR GCA 90 bp CTTCAATTCTACTCCATTGACCTACCTGGCTGTCTTTGTACCAGTACCATGGAGTTCTTGTCTTCATTCTaGTTTATCTTCCAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: LQFYSIDLPGCLCTSTMEFLSSF*FIFQKH
Trigger: GTGCTTTTGGAAGATAAAGCAGAATGAAGACAAGAA...CTCCATGGTACTGGTACAAAGACAGCCAGGTAGGTCAATGGAGTAGAATTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR CCA 90 bp CACTTGTCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACCTTTCCCATTGTCCTTaGGCAGATTATCAAGCTTTT +
Preference number: 4 (lower is better)
Translates to: HLSVSAYQVTSFVIGLPHLSHCP*ADYQAF
Trigger: AAAAGCTTGATAATCTGCCCAAGGACAATGGGAAAG...GTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGACAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGTGGCTGCATTTGGATaGCCAATGAAGAGCAAAGGG +
Preference number: 4 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPVAAFG*PMKSKG
Trigger: CCCTTTGCTCTTCATTGGCCATCCAAATGCAGCCAC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTTCATTGGAATCATGTTaGCAAAGGCAAAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFSLESC*QRQSRL
Trigger: CAGTCTGCTTTGCCTTTGTCAACATGATTCCAATGA...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CTAACTTGGGTTCCATTCCACACACAGGCACCAAACTCTGACACTATTATTGATGACAACATTTGTGGATaGTGTCATGATTTGGTTGTA +
Preference number: 4 (lower is better)
Translates to: LTWVPFHTQAPNSDTIIDDNICG*CHDLVV
Trigger: TACAACCAAATCATGACATCATCCACAAATGTTGTC...ATCAATAATAGTGTCAGAGTTTGGTGCCTGTGTGTGGAATGGAACCCAAGTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGCAACTCTTTCAATGGATATTAACCATTCCAATGAGTaGTTGGATGAGCAGTTCTTC +
Preference number: 4 (lower is better)
Translates to: HPFVLAPNFVSATLSMDINHSNE*LDEQFF
Trigger: GAAGAACTGCTCATCCAATCACTCATTGGAATGGTT...AATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGATACAACTCCAAATGTaGTTTGCTGTAGAATGCAGG +
Preference number: 4 (lower is better)
Translates to: FHLSFVILELETLVFCPGIQLQM*FAVECR
Trigger: CCTGCATTCTACAGCAAATCACATTTGGAGTTGTAT...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACACAGTAAAATGCATTaGCTGAACCCTTGTGGCATA +
Preference number: 4 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRHSKMH*LNPCGI
Trigger: TATGCCACAAGGGTTCAGTCAATGCATTTTACTGTG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp TTGTCCAGGGAAATTTTTCCTCTGCCCAATTGTTCAAGGTTTTTCTCCACTTTTATCAGACACAAGAAGTaGAATGTTCAGGAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: LSREIFPLPNCSRFFSTFIRHKK*NVQEPE
Trigger: TTCTGGCTCCTGAACATTCCACTTCTTGTGTCTGAT...AAAAGTGGAGAAAAACCTTGAACAATTGGGCAGAGGAAAAATTTCCCTGGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp CATTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCTaGCTGCCTACTCCTCTTGGGTTTATTTGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: HLVDFSPEFDYF*LPTPLGFICFL
Trigger: AAGGAAGCAAATAAACCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACTCAGGGCTGAAATCAACCAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp TTTTCTTCCTTGACCAAGTCATCATTGAGTAGAATTTCCATGTGCATTTTGGCTATTCATCTGGGCATTTaGCAGAGTTCAATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: FSSLTKSSLSRISMCILAIHLGI*QSSMSG
Trigger: TCCAGACATTGAACTCTGTCAAATGCCCAGATGAAT...AGCCAAAATGCACATGGAAATTCTACTCAATGATGACTTGGTCAAGGAAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
3UTR CAA 72 bp CTTTTTGTTTCCATTTGGTTGATTTCAGCCCTGAGTTaGATTATTTCTTGCTGCCTACTCCTCTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: LFVSIWLISALS*IISCCLLLLGL
Trigger: TAAACCCAAGAGGAGTAGGCAGCAAGAAATAATCAAACTCAGGGCTGAAATCAACCAAATGGAAACAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp GCCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTaGTTTAATTTTATATCCAGCCACTTTGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: ACLSFEERKATD*FNFISSHFAEV
Trigger: AACTTCAGCAAAGTGGCTGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp TTTACGAATGCATTGATTCTGTTCTGTGTTAGCATATaGGTCCTCCAGACACTGGACACAATAATCCACATT +
Preference number: 4 (lower is better)
Translates to: FTNALILFCVSI*VLQTLDTIIHI
Trigger: AATGTGGATTATTGTGTCCAGTGTCTGGAGGACCAATATGCTAACACAGAACAGAATCAATGCATTCGTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTGTGATTTaGAATGCCAGAACTACAGTAATCGTTTTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: RKYFIILWEAVI*NARTTVIVLAK
Trigger: CTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCAAAGAATGATGAAGTACTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGATGAGCATTGGAAGATaGTTTCACCCTGATCATTTC +
Preference number: 4 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVMSIGR*FHPDHF
Trigger: GAAATGATCAGGGTGAAATCATCTTCCAATGCTCAT...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCAATCAGACACAAGAAGTaGAATGTTCAGGAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: PVYPLRRGRLLICLILYPIRHKK*NVQEPE
Trigger: TTCTGGCTCCTGAACATTCCACTTCTTGTGTCTGAT...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR CCA 90 bp CACTGTGCCCTCGGGATAGTCTGGTTAAGTGTTTATCTATTGTTGATTTTCTCAACAGAGTTCAATGTCTaGACAAAATGTTTAAACCCA +
Preference number: 4 (lower is better)
Translates to: HCALGIVWLSVYLLLIFSTEFNV*TKCLNP
Trigger: TGGGTTTAAACATTTTGTCCAGACATTGAACTCTGT...TGAGAAAATCAACAATAGATAAACACTTAACCAGACTATCCCGAGGGCACAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp ACCATGAATGTGTGGGTTCATTTCTGCATCTTCAATTCTACTCCATTGACCTACGCACATACAATAACTTaGATGAGAATACAAATGGGA +
Preference number: 4 (lower is better)
Translates to: TMNVWVHFCIFNSTPLTYAHTIT*MRIQMG
Trigger: TCCCATTTGTATTCTCATCCAAGTTATTGTATGTGC...GTAGGTCAATGGAGTAGAATTGAAGATGCAGAAATGAACCCACACATTCATGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
3UTR CAA 72 bp ATCCCTGTATCCCTCGATGAAATCTTCTTGATCATGTaGAATGATCATTTTGATGTGTTCTTGGATTCGGTT +
Preference number: 4 (lower is better)
Translates to: IPVSLDEIFLIM*NDHFDVFLDSV
Trigger: AACCGAATCCAAGAACACATCAAAATGATCATTCAACATGATCAAGAAGATTTCATCGAGGGATACAGGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp AGGCTACTGATTTGTTTAATTTTATATCCAGCCACTTaGCTGAAGTTGTTTACTAGGTTTAGGAGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: RLLICLILYPAT*LKLFTRFRSSL
Trigger: CAGAGAGCTCCTAAACCTAGTAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAAACAAATCAGTAGCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR TCA 90 bp TTTAGTTGGATTGCTTCAAGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGGATAAATGTACCTGTTaGCCATTTGGAAAGTATGGA +
Preference number: 4 (lower is better)
Translates to: FSWIASSSFPFGLIWSTGDKCTC*PFGKYG
Trigger: TCCATACTTTCCAAATGGTCAACAGGTACATTTATC...CCCAGTAGACCATATTAAACCAAATGGAAAGGAACTTGAAGCAATCCAACTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTGTTTTACGAATGCATTaGTTCTGTTCTGTGTTAGCA +
Preference number: 4 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPVLRMH*FCSVLA
Trigger: TGCTAACACAGAACAGAATCAATGCATTCGTAAAAC...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR TCA 90 bp CCTGTTTATCCTTTGAGGAGAGGAAGGCTACTGATTTGTTTAATTTTATATCCAGAAACAAAAGATGAGTaGGATGAGCAAGATATAGGT +
Preference number: 4 (lower is better)
Translates to: PVYPLRRGRLLICLILYPETKDE*DEQDIG
Trigger: ACCTATATCTTGCTCATCTCACTCATCTTTTGTTTC...TGGATATAAAATTAAACAAATCAGTAGCCTTCCTCTCCTCAAAGGATAAACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR GCA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTATGTCATATTCTTCCTaGAGTTTGTTTCTTCGGTTC +
Preference number: 4 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPMSYSS*SLFLRF
Trigger: GAACCGAAGAAACAAACTGCAGGAAGAATATGACAT...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CCA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTTACCTGTTGACCATTTaGAAAGTATGGACTAAACAT +
Preference number: 4 (lower is better)
Translates to: MRFHLSFVILELETLVFCYLLTI*KVWTKH
Trigger: ATGTTTAGTCCATACTTTCCAAATGGTCAACAGGTA...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
3UTR CAA 72 bp AAGCTTAGGAGTTGTTTCCATCTTCTGAGATCTTCTTaGATTTCATTCTTCATAGGCTTGAAGTTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: KLRSCFHLLRSS*ISFFIGLKFLS
Trigger: TGACAAGAACTTCAAGCCTATGAAGAATGAAATCAAAGAAGATCTCAGAAGATGGAAACAACTCCTAAGCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp ATCTGTTGTTACTCGGAAGTCCTCGATCTATTTCGATaGAGCTTTGTTCAAAGAGATAAGAATCGATCAATT +
Preference number: 4 (lower is better)
Translates to: ICCYSEVLDLFR*SFVQRDKNRSI
Trigger: AATTGATCGATTCTTATCTCTTTGAACAAAGCTCAATCGAAATAGATCGAGGACTTCCGAGTAACAACAGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp AGTTCCTTTCCATTTGGTTTAATATGGTCTACTGGGTaGCTGTATTTTGCTTTTACTATGTCCATGTATACA +
Preference number: 4 (lower is better)
Translates to: SSFPFGLIWSTG*LYFAFTMSMYT
Trigger: TGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATATTAAACCAAATGGAAAGGAACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
3UTR CAA 72 bp AGAACTGGACTTTGTAAGTTGTTAAAGCCAACGCATTaGTACAGATCAAAATATAAACTTCACAGTGAACAG +
Preference number: 4 (lower is better)
Translates to: RTGLCKLLKPTH*YRSKYKLHSEQ
Trigger: CTGTTCACTGTGAAGTTTATATTTTGATCTGTACAAATGCGTTGGCTTTAACAACTTACAAAGTCCAGTTCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234002.2
CDS-3UTR CAA 90 bp CTCCCCAAGGTCTCCAATGGTGGGATGGGCCCACACACCCATCTTCAAAATTTTTGGGAGGCTGTGATTTaGAATGCCAGAACTACAGTA +
Preference number: 5 (lower is better)
Translates to: LPKVSNGGMGPHTHLQNFWEAVI*NARTTV
Trigger: TACTGTAGTTCTGGCATTCAAAATCACAGCCTCCCA...AAAATTTTGAAGATGGGTGTGTGGGCCCATCCCACCATTGGAGACCTTGGGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp AAATGTTATCCCCTTTCCTTGTTTCGCCTCTGGAAACACCCCTTCCATCTCCTTGTGAGAGTTCTGTTATaGGCCTTAACAATTGGAGTA +
Preference number: 5 (lower is better)
Translates to: KCYPLSLFRLWKHPFHLLVRVLL*ALTIGV
Trigger: TACTCCAATTGTTAAGGCCAATAACAGAACTCTCAC...AAGGAGATGGAAGGGGTGTTTCCAGAGGCGAAACAAGGAAAGGGGATAACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGCAACTCTTTCAATGGATATTAATCTCACTATGGTGTaGTCCAAAAGCAAAAGTCCC +
Preference number: 5 (lower is better)
Translates to: HPFVLAPNFVSATLSMDINLTMV*SKSKSP
Trigger: GGGACTTTTGCTTTTGGACAACACCATAGTGAGATT...AATATCCATTGAAAGAGTTGCAGAGACAAAGTTTGGAGCTAAGACGAAAGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp CTAGGTTTCTGTGCTAAAAGCCACTTGTCAGTGAGTGCATATCAAGTGACTTCTTGCACATACAATAACTaGGATGAGAATACAAATGGG +
Preference number: 5 (lower is better)
Translates to: LGFCAKSHLSVSAYQVTSCTYNN*DENTNG
Trigger: CCCATTTGTATTCTCATCCAAGTTATTGTATGTGCA...AGAAGTCACTTGATATGCACTCACTGACAAGTGGCTTTTAGCACAGAAACCTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp TATTGGATTACATTGATGGATTTCTATGTGTTGAACCATCCCTGTATCCCTCGACCCTGGTTTCTATTCTaGTCTTCATTCTGCTTTATC +
Preference number: 5 (lower is better)
Translates to: YWITLMDFYVLNHPCIPRPWFLF*SSFCFI
Trigger: GATAAAGCAGAATGAAGACAAGAATAGAAACCAGGG...TCGAGGGATACAGGGATGGTTCAACACATAGAAATCCATCAATGTAATCCAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR CAA 90 bp ATGAGGTTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCTCATTGGAATCATGTaGACAAAGGCAAAGCAGACT +
Preference number: 5 (lower is better)
Translates to: MRFHLSFVILELETLVFCLIGIM*TKAKQT
Trigger: AGTCTGCTTTGCCTTTGTCAACATGATTCCAATGAG...ACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAACCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp TTCCATTTGTCATTTGTGATCTTAGAGCTTGAGACATTGGTGTTTTGTCCAGGGCAGATTATCAAGCTTTaGAAAAGCTATCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: FHLSFVILELETLVFCPGQIIKL*KSYLME
Trigger: CTCCATCAGATAGCTTTTCAAAAGCTTGATAATCTG...CCCTGGACAAAACACCAATGTCTCAAGCTCTAAGATCACAAATGACAAATGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp TTTTATTTATTTACATTACAAATGTTGTCCCACTTCCAGATCAATCCCCTCCCTCCTGTGCACTTCCTTTaGCCCACTCTATCATATCTT +
Preference number: 5 (lower is better)
Translates to: FYLFTLQMLSHFQINPLPPVHFL*PTLSYL
Trigger: AAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGG...AGGGAGGGGATTGATCTGGAAGTGGGACAACATTTGTAATGTAAATAAATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS-3UTR CAA 90 bp TATGGTCTACTGGGTTGCTGTATTTTGCTTTTACTATGTCCATGTATACACCTTCCCTGGTTTCTATTCTaGTCTTCATTCTGCTTTATC +
Preference number: 5 (lower is better)
Translates to: YGLLGCCILLLLCPCIHLPWFLF*SSFCFI
Trigger: GATAAAGCAGAATGAAGACAAGAATAGAAACCAGGG...AAGGTGTATACATGGACATAGTAAAAGCAAAATACAGCAACCCAGTAGACCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS-3UTR CAA 90 bp TGGTGGAATTTCTGGGGTCTCATAAGTATGCTATCATATCATCTACAAATAGTGCTGAATGTTATGGATTaGGCTTCATTAAAGGCACCA +
Preference number: 5 (lower is better)
Translates to: WWNFWGLISMLSYHLQIVLNVMD*ASLKAP
Trigger: TGGTGCCTTTAATGAAGCCAAATCCATAACATTCAG...CACTATTTGTAGATGATATGATAGCATACTTATGAGACCCCAGAAATTCCACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171996.3
CDS TCA 72 bp ACTCTTTCTCCACAGGCCGTTGTACTGCATGAATCATaGAGGTGCATTCTGTTCCCTGGTTTCTATTCTTGT +
Preference number: 6 (lower is better)
Translates to: TLSPQAVVLHES*RCILFPGFYSC
Trigger: ACAAGAATAGAAACCAGGGAACAGAATGCACCTTCATGATTCATGCAGTACAACGGCCTGTGGAGAAAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS CCA 72 bp AAAGCACCTCGGATAAATAAAATCAGACACAAGAAGTaGAATGTTCAGGAGCCAGAAGAGGAAAATCAAGGT +
Preference number: 6 (lower is better)
Translates to: KAPRINKIRHKK*NVQEPEEENQG
Trigger: ACCTTGATTTTCCTCTTCTGGCTCCTGAACATTCCACTTCTTGTGTCTGATTTTATTTATCCGAGGTGCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2
CDS CAA 72 bp ATCATGAAGGTGCATTCTGTTCCCTGGTTTCTATTCTaGTCTTCATTCTGCTTTATCTTCCAAAAGCACCTC +
Preference number: 6 (lower is better)
Translates to: IMKVHSVPWFLF*SSFCFIFQKHL
Trigger: GAGGTGCTTTTGGAAGATAAAGCAGAATGAAGACAAGAATAGAAACCAGGGAACAGAATGCACCTTCATGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171996.3
ENSMUST00000234002.2
ENSMUST00000234323.2