RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R115 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091076

Ensembl transcript IDs: ENSMUST00000168175.3, ENSMUST00000234796.2

Found 138 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCTTGCTCTTCTTTAAACATGGGATGTCATAGCCAGCAGCGCCAGTaGGTTTCTTGGCCAACAAACCCAGGTCTGCTGATCTCAGCACAG +
Preference number: 1 (lower is better)
Translates to: PCSSLNMGCHSQQRQ*VSWPTNPGLLISAQ
Trigger: CTGTGCTGAGATCAGCAGACCTGGGTTTGTTGGCCAAGAAACTCACTGGCGCTGCTGGCTATGACATCCCATGTTTAAAGAAGAGCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 90 bp TGTTGTTACAGGTGTTTGGTGACAGCAGTTGGTGGGGCTGAGTATTaGATCAGTTCCTCTACAAGAACAGGCCATGATTATATCTGCAGA +
Preference number: 1 (lower is better)
Translates to: CCYRCLVTAVGGAEY*ISSSTRTGHDYICR
Trigger: TCTGCAGATATAATCATGGCCTGTTCTTGTAGAGGAACTGATTCAATACTCAGCCCCACCAACTGCTGTCACCAAACACCTGTAACAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR GCA 90 bp TTGTCCATCAATATCAACAGAAGGAGGAGAAGCTCCCAGCCAGACTaGACATACAATAACTTGGATGAGAATACAAACGGGAATGATGTA +
Preference number: 1 (lower is better)
Translates to: LSININRRRRSSQPD*TYNNLDENTNGNDV
Trigger: TACATCATTCCCGTTTGTATTCTCATCCAAGTTATTGTATGTGCAGTCTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATTGATGGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTGGTGGGGCTGAGTATTaGATCAGTTCCTCTACAAGA +
Preference number: 2 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLGGAEY*ISSSTR
Trigger: TCTTGTAGAGGAACTGATTCAATACTCAGCCCCACC...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTCTGAGGACCAGGAAGTaGGGCAGGATTTGTAATGTA +
Preference number: 2 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLLRTRK*GRICNV
Trigger: TACATTACAAATCCTGCCTCACTTCCTGGTCCTCAG...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTACGAGCATTGGAAGATaGTTTCACCCTGATCATTTC +
Preference number: 2 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLTSIGR*FHPDHF
Trigger: GAAATGATCAGGGTGAAATCATCTTCCAATGCTCGT...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTTGGAGCCTGTCTGTTTaGACTTTGTTACATTATGCA +
Preference number: 2 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLWSLSV*TLLHYA
Trigger: TGCATAATGTAACAAAGTTCAAACAGACAGGCTCCA...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GAAGCTCCCAATGGCCAGGGTAGCCAAGTATCCCAGAACACAGTAAAATGCATTGGTGGGGCTGAGTATTaGATCAGTTCCTCTACAAGA +
Preference number: 2 (lower is better)
Translates to: EAPNGQGSQVSQNTVKCIGGAEY*ISSSTR
Trigger: TCTTGTAGAGGAACTGATTCAATACTCAGCCCCACC...AATGCATTTTACTGTGTTCTGGGATACTTGGCTACCCTGGCCATTGGGAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR GCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGATGATGATCTGTCCATaGTCAGATTGTCCATCAATA +
Preference number: 2 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVMMICP*SDCPSI
Trigger: TATTGATGGACAATCTGAGCATGGACAGATCATCAT...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR GCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACGCATCCCAGCATCCCTaGACTGGAGGCCAAAGTGGA +
Preference number: 2 (lower is better)
Translates to: CRIRLELCAFQSICVCVYASQHP*TGGQSG
Trigger: TCCACTTTGGCCTCCAGTGCAGGGATGCTGGGATGC...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACAGCCAGCAGCGCCAGTaGGTTTCTTGGCCAACAAAC +
Preference number: 2 (lower is better)
Translates to: CRIRLELCAFQSICVCVYSQQRQ*VSWPTN
Trigger: GTTTGTTGGCCAAGAAACTCACTGGCGCTGCTGGCT...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATAGCCAGCAGCGCCAGTaGGTTTCTTGGCCAACAAAC +
Preference number: 2 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDSQQRQ*VSWPTN
Trigger: GTTTGTTGGCCAAGAAACTCACTGGCGCTGCTGGCT...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGCACTGGAGGCCAAAGTaGAGAAGATCTCCACAGCCA +
Preference number: 2 (lower is better)
Translates to: CSILALTIIIHICSRGLMHWRPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCACTTTGGCCTCCAGTG...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGAGCAGTTGGTGGGGCTaGGTATTGAATCAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: CSILALTIIIHICSRGLMSSWWG*VLNQFL
Trigger: GAGGAACTGATTCAATACTCAGCCCCACCAACTGCT...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATGTTACAGGTGTTTGGTaGCAGCAGTTGGTGGGGCTG +
Preference number: 2 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNVTGVW*QQLVGL
Trigger: CAGCCCCACCAACTGCTGTCACCAAACACCTGTAAC...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GATACCATGCTGTTGTCTGTTTCTACTTGGCTTGCTGTCATCACATCCCTCTTACAAGAACCACAATTGTaGATGCAGAGAAGAACAAGG +
Preference number: 2 (lower is better)
Translates to: DTMLLSVSTWLAVITSLLQEPQL*MQRRTR
Trigger: CCTTGTTCTTCTCTGCATTCACAATTGTGGTTCTTG...TAAGAGGGATGTGATGACAGCAAGCCAAGTAGAAACAGACAACAGCATGGTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGGTTGTAGGATGCAGGTaGCTGCATTTGGATGGCCAA +
Preference number: 2 (lower is better)
Translates to: CSILALTIIIHICSRGLMVVGCR*LHLDGQ
Trigger: TTGGCCATCCAAATGCAGCCACCTGCATCCTACAAC...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGCCAGCATCCCTGCACTaGAGGCCAAAGTGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVPASLH*RPKWRR
Trigger: TCTTCTCCACTTTGGCCTCCAGTGCAGGGATGCTGG...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGGTGTGTGTGTGTGTGTaGGTGTTCTTTAGGAGCATA +
Preference number: 2 (lower is better)
Translates to: CSILALTIIIHICSRGLMVCVCV*VFFRSI
Trigger: TATGCTCCTAAAGAACACTCACACACACACACACAC...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp GATACCATGCTGTTGTCTGTTTCTACTTGGCTTGCTGTCATCACATCCCTCTTAATACAATTCCAAATGTaGTTTGTTGTAGGATGCAGG +
Preference number: 2 (lower is better)
Translates to: DTMLLSVSTWLAVITSLLIQFQM*FVVGCR
Trigger: CCTGCATCCTACAACAAATCACATTTGGAATTGTAT...TAAGAGGGATGTGATGACAGCAAGCCAAGTAGAAACAGACAACAGCATGGTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR GCA 90 bp GATACCATGCTGTTGTCTGTTTCTACTTGGCTTGCTGTCATCACATCCCTCTTATCAAAGCTGATCTTTTaGACAGAGTCACCTAAATTC +
Preference number: 2 (lower is better)
Translates to: DTMLLSVSTWLAVITSLLSKLIF*TESPKF
Trigger: GAATTTAGGTGACTCTGTGCAAAAGATCAGCTTTGA...TAAGAGGGATGTGATGACAGCAAGCCAAGTAGAAACAGACAACAGCATGGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CAA 90 bp CCTGAAACTAGAAAGTACTTCATCATTCTTTGGGAGGCTATGATTTaGAATGCCAGAACTACAGTAATCGTTTTAGCCAAGACAGTGGAA +
Preference number: 2 (lower is better)
Translates to: PETRKYFIILWEAMI*NARTTVIVLAKTVE
Trigger: TTCCACTGTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCAAAGAATGATGAAGTACTTTCTAGTTTCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTGTATGTGTGTTATGTaGGAAATAGTTGGAGCCTGT +
Preference number: 2 (lower is better)
Translates to: CRIRLELCAFQSICVCVYCMCVM*EIVGAC
Trigger: ACAGGCTCCAACTATTTCTCACATAACACACATACA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR GCA 90 bp GTTTGGCTTAAGCCATCAAACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTGGCTATGATTTTGAATaGCAGAACTACAGTAATCGT +
Preference number: 2 (lower is better)
Translates to: VWLKPSNLQVLCVCLSLCGYDFE*QNYSNR
Trigger: ACGATTACTGTAGTTCTGGCATTCAAAATCATAGCC...ACAGAGAGACAGACAAACACATAATACTTGCAGGTTTGATGGCTTAAGCCAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR TCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTATGTGTGTTATGTaGGAAATAGTTGGAGCCTGT +
Preference number: 2 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVCMCVM*EIVGAC
Trigger: ACAGGCTCCAACTATTTCTCACATAACACACATACA...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR GCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGTTAAGCCATCAAACCTaGAAGTATTATGTGTTTGTC +
Preference number: 2 (lower is better)
Translates to: CSILALTIIIHICSRGLMLSHQT*KYYVFV
Trigger: GACAAACACATAATACTTGCAGGTTTGATGGCTTAA...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTATGAAAATTGCAAATaGTCTTACACTCCTCACTGT +
Preference number: 2 (lower is better)
Translates to: CRIRLELCAFQSICVCVYYENCK*SYTPHC
Trigger: ACAGTGAGGAGTGTAAGACCATTTGCAATTTTCATA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CCA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATGCACATACAATAACTTaGATGAGAATACAAACGGGA +
Preference number: 2 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDAHTIT*MRIQTG
Trigger: TCCCGTTTGTATTCTCATCCAAGTTATTGTATGTGC...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR TCA 72 bp GCCAGTGAGTTTCTTGGCCAACAAACCCAGGTCTGCTaGTCTCAGCACAGACTTTCAGCAGCTACCGCCTTT +
Preference number: 3 (lower is better)
Translates to: ASEFLGQQTQVC*SQHRLSAATAF
Trigger: AAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGCAGACCTGGGTTTGTTGGCCAAGAAACTCACTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR GCA 72 bp TTTTTGGGAGAGGGTGCATCTACTCCTATAGTGGTTTaGTGTCCCAGGTATGGGCATACTGGGTGGCTGGGA +
Preference number: 3 (lower is better)
Translates to: FLGEGASTPIVV*CPRYGHTGWLG
Trigger: TCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAACCACTATAGGAGTAGATGCACCCTCTCCCAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGCACCTTACGAGAACATaGAAAAGCAGACTCCCAGTG +
Preference number: 3 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVHLTRT*KSRLPV
Trigger: CACTGGGAGTCTGCTTTTCAATGTTCTCGTAAGGTG...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CCA 72 bp TCCTATAGTGGTTTGCTGTCCCAGGTATGGGCATACTaGGTGGCTGGGAATGGGAAGCAGCCTTTCATATGT +
Preference number: 3 (lower is better)
Translates to: SYSGLLSQVWAY*VAGNGKQPFIC
Trigger: ACATATGAAAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAACCACTATAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTGCCAGTAAGAGAAATTaGCTGAAAGATTACCTTGCT +
Preference number: 3 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLASKRN*LKDYLA
Trigger: AGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 72 bp TCTTTAAACATGGGATGTCATAGCCAGCAGCGCCAGTaGGTTTCTTGGCCAACAAACCCAGGTCTGCTGATC +
Preference number: 3 (lower is better)
Translates to: SLNMGCHSQQRQ*VSWPTNPGLLI
Trigger: GATCAGCAGACCTGGGTTTGTTGGCCAAGAAACTCACTGGCGCTGCTGGCTATGACATCCCATGTTTAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTATAGCTTCAGGTAAATaGCAACCCAAAAGAGATCAT +
Preference number: 3 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLIASGK*QPKRDH
Trigger: ATGATCTCTTTTGGGTTGCAATTTACCTGAAGCTAT...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGATAGCTTCAGGTAAATaGCAACCCAAAAGAGATCAT +
Preference number: 3 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVIASGK*QPKRDH
Trigger: ATGATCTCTTTTGGGTTGCAATTTACCTGAAGCTAT...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GATACCATGCTGTTGTCTGTTTCTACTTGGCTTGCTGTCATCACATCCCTCTTAGACAGACAGACTTTTTaGGGAGAGGGTGCATCTACT +
Preference number: 3 (lower is better)
Translates to: DTMLLSVSTWLAVITSLLDRQTF*GEGAST
Trigger: AGTAGATGCACCCTCTCCCAAAAAAGTCTGTCTGTC...TAAGAGGGATGTGATGACAGCAAGCCAAGTAGAAACAGACAACAGCATGGTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 72 bp AGGTGTTTGGTGACAGCAGTTGGTGGGGCTGAGTATTaGATCAGTTCCTCTACAAGAACAGGCCATGATTAT +
Preference number: 3 (lower is better)
Translates to: RCLVTAVGGAEY*ISSSTRTGHDY
Trigger: ATAATCATGGCCTGTTCTTGTAGAGGAACTGATTCAATACTCAGCCCCACCAACTGCTGTCACCAAACACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 72 bp AGCTACCGCCTTTGGGTTACTCTGTGGTGTCAAAGCTaGTCTTTTGCACAGAGTCACCTAAATTCCACACAT +
Preference number: 3 (lower is better)
Translates to: SYRLWVTLWCQS*SFAQSHLNSTH
Trigger: ATGTGTGGAATTTAGGTGACTCTGTGCAAAAGATCAGCTTTGACACCACAGAGTAACCCAAAGGCGGTAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR GCA 72 bp AATATCAACAGAAGGAGGAGAAGCTCCCAGCCAGACTaGACATACAATAACTTGGATGAGAATACAAACGGG +
Preference number: 3 (lower is better)
Translates to: NINRRRRSSQPD*TYNNLDENTNG
Trigger: CCCGTTTGTATTCTCATCCAAGTTATTGTATGTGCAGTCTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTGTTGTTACAGGTGTTaGGTGACAGCAGTTGGTGGG +
Preference number: 3 (lower is better)
Translates to: CRIRLELCAFQSICVCVYCCYRC*VTAVGG
Trigger: CCCACCAACTGCTGTCACCAAACACCTGTAACAACA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 72 bp ATCTGGTTAATTGTAGCTGTTGTTACAGGTGTTTGGTaGCAGCAGTTGGTGGGGCTGAGTATTGAATCAGTT +
Preference number: 3 (lower is better)
Translates to: IWLIVAVVTGVW*QQLVGLSIESV
Trigger: AACTGATTCAATACTCAGCCCCACCAACTGCTGTCACCAAACACCTGTAACAACAGCTACAATTAACCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR GCA 72 bp ACTGAACCCTTGTGGCATACAATGATGATCTGTCCATaGTCAGATTGTCCATCAATATCAACAGAAGGAGGA +
Preference number: 3 (lower is better)
Translates to: TEPLWHTMMICP*SDCPSISTEGG
Trigger: TCCTCCTTCTGTTGATATTGATGGACAATCTGAGCATGGACAGATCATCATTGTATGCCACAAGGGTTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTGTTGTTACAGGTGTTaGGTGACAGCAGTTGGTGGG +
Preference number: 3 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDCCYRC*VTAVGG
Trigger: CCCACCAACTGCTGTCACCAAACACCTGTAACAACA...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGCACCTTACGAGAACATaGAAAAGCAGACTCCCAGTG +
Preference number: 3 (lower is better)
Translates to: CSILALTIIIHICSRGLMHLTRT*KSRLPV
Trigger: CACTGGGAGTCTGCTTTTCAATGTTCTCGTAAGGTG...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp ACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTCTCTTTGTCTGTCTCTTGTTGGGAGGCTATGATTTaGAATGCCAGAACTACAGTA +
Preference number: 3 (lower is better)
Translates to: TCKYYVFVCLSVSLSVSCWEAMI*NARTTV
Trigger: TACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCA...ACAAGAGACAGACAAAGAGACAGAGAGACAGACAAACACATAATACTTGCAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GTTTGGCTTAAGCCATCAAACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTCCCAGTGTAAAGTTTTaGTCACATTCTTCTGTATCT +
Preference number: 3 (lower is better)
Translates to: VWLKPSNLQVLCVCLSLCPSVKF*SHSSVS
Trigger: AGATACAGAAGAATGTGACAAAAACTTTACACTGGG...ACAGAGAGACAGACAAACACATAATACTTGCAGGTTTGATGGCTTAAGCCAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACGCCAGTAAGAGAAATTaGCTGAAAGATTACCTTGCT +
Preference number: 3 (lower is better)
Translates to: CRIRLELCAFQSICVCVYASKRN*LKDYLA
Trigger: AGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTGCACATACAATAACTaGGATGAGAATACAAACGGG +
Preference number: 3 (lower is better)
Translates to: CRIRLELCAFQSICVCVYCTYNN*DENTNG
Trigger: CCCGTTTGTATTCTCATCCAAGTTATTGTATGTGCA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR GCA 72 bp GTACTTCATCATTCTTTGGGAGGCTATGATTTTGAATaGCAGAACTACAGTAATCGTTTTAGCCAAGACAGT +
Preference number: 3 (lower is better)
Translates to: VLHHSLGGYDFE*QNYSNRFSQDS
Trigger: ACTGTCTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCAAAGAATGATGAAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR CCA 72 bp ATTGCCCCTGAAACTAGAAAGTACTTCATCATTCTTTaGGAGGCTATGATTTTGAATGCCAGAACTACAGTA +
Preference number: 3 (lower is better)
Translates to: IAPETRKYFIIL*EAMILNARTTV
Trigger: TACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCAAAGAATGATGAAGTACTTTCTAGTTTCAGGGGCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
3UTR-3UTR CAA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATTTTATGTCATTTGATTaGTGGGCATATGTCTGTGTG +
Preference number: 3 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNFMSFD*WAYVCV
Trigger: CACACAGACATATGCCCACAAATCAAATGACATAAA...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR TCA 72 bp ACTACAAATTTCTGTCTGCCAGTAAGAGAAATTTGCTaGAAGATTACCTTGCTACCTTACAATTGGTTAATC +
Preference number: 3 (lower is better)
Translates to: TTNFCLPVREIC*KITLLPYNWLI
Trigger: GATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGCAGACAGAAATTTGTAGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CCA 72 bp TGTATATATGTGTATAAACTTCATGTAGGATTAGGTTaGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: CIYVYKLHVGLG*NFVPSKVYVCV
Trigger: CACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATACACATATATACA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTACTGGAGTACTGTGGTaGTTCACAATGACCCCAAGA +
Preference number: 4 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLTGVLW*FTMTPR
Trigger: TCTTGGGGTCATTGTGAAGCACCACAGTACTCCAGT...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR TCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGGATCATTGTCTGAGATaGCCAACCCTACCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVDHCLR*PTLPSS
Trigger: GGAACTGGGTAGGGTTGGTCATCTCAGACAATGATC...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTGTACATCCTGTTCCCTaGTTTCTGTCCCTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLVHPVP*FLSLFS
Trigger: TGAAAACAGGGACAGAAACCAGGGAACAGGATGTAC...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTCTGTGCACTTCCTTTTaGCCACTCTATCATATCTTC +
Preference number: 4 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLLCTSF*PLYHIF
Trigger: GAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAG...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTTTTCAGGACAAGGTTTaGAATGAAAACAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLFQDKV*NENSML
Trigger: CAGCATGCTGTTTTCATTGCAAACCTTGTCCTGAAA...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
3UTR CAA 72 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTaGGGTTACTCTGTGGTGTCAAAGCTGATCTTTTGC +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPP*GYSVVSKLIFC
Trigger: GCAAAAGATCAGCTTTGACACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTATACAATTCCAAATGTaGTTTGTTGTAGGATGCAGG +
Preference number: 4 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLIQFQM*FVVGCR
Trigger: CCTGCATCCTACAACAAATCACATTTGGAATTGTAT...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR GCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGAGTTATCTGATGGAGTaGGTGGGCAAAAGCATAAAC +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVSYLME*VGKSIN
Trigger: GTTTATGCTTTTGCCCACGCACTCCATCAGATAACT...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGAGAAATTGGATACCTTaGTCATTGTCTGAGATGACC +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVRNWIP*SLSEMT
Trigger: GGTCATCTCAGACAATGATCAAGGTATCCAATTTCT...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGGCTTGTAAGCGCCATTaGACATTTGGTGTATTCTTT +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVACKRH*TFGVFF
Trigger: AAAGAATACACCAAATGTGCAATGGCGCTTACAAGC...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp GCTGATCTCAGCACAGACTTTCAGCAGCTACCGCCTTTGGGTTACTCTGTGGTGTGCAGTTTGTCTCTTTaGTTCATATTCACTCTGTCC +
Preference number: 4 (lower is better)
Translates to: ADLSTDFQQLPPLGYSVVCSLSL*FIFTLS
Trigger: GGACAGAGTGAATATGAACCAAAGAGACAAACTGCA...CACCACAGAGTAACCCAAAGGCGGTAGCTGCTGAAAGTCTGTGCTGAGATCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGGCATCCCAGCATCCCTaGACTGGAGGCCAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: CSILALTIIIHICSRGLMASQHP*TGGQSG
Trigger: TCCACTTTGGCCTCCAGTGCAGGGATGCTGGGATGC...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CCA 90 bp AAAGCCAGAGTGAAGCTCCCAATGGCCAGGGTAGCCAAGTATCCCAGAACACAGAAATCCAAGGCCATGTaGGAAATTCCAAATGTAGAA +
Preference number: 4 (lower is better)
Translates to: KARVKLPMARVAKYPRTQKSKAM*EIPNVE
Trigger: TTCTACATTTGGAATTTCCCACATGGCCTTGGATTT...CTGTGTTCTGGGATACTTGGCTACCCTGGCCATTGGGAGCTTCACTCTGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TCCTCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGCCAGCATCCCTGCACTaGAGGCCAAAGTGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: SSLIHATRRSSLSLRMGQPASLH*RPKWRR
Trigger: TCTTCTCCACTTTGGCCTCCAGTGCAGGGATGCTGG...CTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
3UTR CAA 72 bp CTTGTGGCATACAATGATGATCTGTCCATGCTCAGATaGTCCATCAATATCAACAGAAGGAGGAGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: LVAYNDDLSMLR*SININRRRRSS
Trigger: GGAGCTTCTCCTCCTTCTGTTGATATTGATGGACAATCTGAGCATGGACAGATCATCATTGTATGCCACAAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GATACCATGCTGTTGTCTGTTTCTACTTGGCTTGCTGTCATCACATCCCTCTTAAACCGAAATGAATTATaGAGGATACCAGGCCAAAGG +
Preference number: 4 (lower is better)
Translates to: DTMLLSVSTWLAVITSLLNRNEL*RIPGQR
Trigger: CCTTTGGCCTGGTATCCTTCATAATTCATTTCGGTT...TAAGAGGGATGTGATGACAGCAAGCCAAGTAGAAACAGACAACAGCATGGTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATCACTGGAGGCCAAAGTaGAGAAGATCTCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDHWRPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCACTTTGGCCTCCAGTG...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR TCA 90 bp CTGTTATTGGCCTTAACAACTGGAGTACTGTGGTGCTTCACAATGACCCCAAGATCATTGGAATCATGTTaGCAAAAGCAAAGCAGATTG +
Preference number: 4 (lower is better)
Translates to: LLLALTTGVLWCFTMTPRSLESC*QKQSRL
Trigger: CAATCTGCTTTGCTTTTGTCAACATGATTCCAATGA...TCTTGGGGTCATTGTGAAGCACCACAGTACTCCAGTTGTTAAGGCCAATAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp ACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTCTCTTTGTCTGTCTCTTGTACTCATCTGGGCATTTaGCAGAGTTCAATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: TCKYYVFVCLSVSLSVSCTHLGI*QSSMSG
Trigger: TCCAGACATTGAACTCTGTCAAATGCCCAGATGAGT...ACAAGAGACAGACAAAGAGACAGAGAGACAGACAAACACATAATACTTGCAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GTTTGGCTTAAGCCATCAAACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTGGACAAGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 4 (lower is better)
Translates to: VWLKPSNLQVLCVCLSLCGQGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCTTGTCC...ACAGAGAGACAGACAAACACATAATACTTGCAGGTTTGATGGCTTAAGCCAAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR GCA 90 bp CTGTTATTGGCCTTAACAACTGGAGTACTGTGGTGCTTCACAATGACCCCAAGAAAATTTCACAGTTGTTaGCCAATTCAGGCTTGTAAG +
Preference number: 4 (lower is better)
Translates to: LLLALTTGVLWCFTMTPRKFHSC*PIQACK
Trigger: CTTACAAGCCTGAATTGGGCAACAACTGTGAAATTT...TCTTGGGGTCATTGTGAAGCACCACAGTACTCCAGTTGTTAAGGCCAATAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp ACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTCTCTTTGTCTGTCTCTTGTGTACATCCTGTTCCCTaGTTTCTGTCCCTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: TCKYYVFVCLSVSLSVSCVHPVP*FLSLFS
Trigger: TGAAAACAGGGACAGAAACCAGGGAACAGGATGTAC...ACAAGAGACAGACAAAGAGACAGAGAGACAGACAAACACATAATACTTGCAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CAA 72 bp AGGAGAAGCTCCCAGCCAGACTGCACATACAATAACTaGGATGAGAATACAAACGGGAATGATGTAGTTAAT +
Preference number: 4 (lower is better)
Translates to: RRSSQPDCTYNN*DENTNGNDVVN
Trigger: ATTAACTACATCATTCCCGTTTGTATTCTCATCCAAGTTATTGTATGTGCAGTCTGGCTGGGAGCTTCTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATGATCATTGTCTGAGATaGCCAACCCTACCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNDHCLR*PTLPSS
Trigger: GGAACTGGGTAGGGTTGGTCATCTCAGACAATGATC...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACACTCATCTGGGCATTTaGCAGAGTTCAATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: CRIRLELCAFQSICVCVYTHLGI*QSSMSG
Trigger: TCCAGACATTGAACTCTGTCAAATGCCCAGATGAGT...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACATTTGGGAACAAATATaGATCCCAGCATCCCTGCAC +
Preference number: 4 (lower is better)
Translates to: CRIRLELCAFQSICVCVYIWEQI*IPASLH
Trigger: GTGCAGGGATGCTGGGATGCATATTTGTTCCCAAAT...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CCA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATGTTGTAGGATGCAGGTaGCTGCATTTGGATGGCCAA +
Preference number: 4 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNVVGCR*LHLDGQ
Trigger: TTGGCCATCCAAATGCAGCCACCTGCATCCTACAAC...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR TCA 90 bp TGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGACTTATGAACCGAAATGAATTATaGAGGATACCAGGCCAAAGG +
Preference number: 4 (lower is better)
Translates to: CSILALTIIIHICSRGLMNRNEL*RIPGQR
Trigger: CCTTTGGCCTGGTATCCTTCATAATTCATTTCGGTT...CATAAGTCCCCTGCTACATATGTGTATTATTATTGTGAGTGCCAAGATACTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTGCAATGAAAACAGCATaGTGCCATTCCGTCCATCCT +
Preference number: 4 (lower is better)
Translates to: LEWVRILLSLSVQREKCFAMKTA*CHSVHP
Trigger: AGGATGGACGGAATGGCAGCATGCTGTTTTCATTGC...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CCA 90 bp TACTTCATCATTCTTTGGGAGGCTATGATTTTGAATGCCAGAACTACAGTAATCATCAGCCAGAAGAAGTaGAATGTTCAGGAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: YFIILWEAMILNARTTVIISQKK*NVQEPE
Trigger: TTCTGGCTCCTGAACATTCCACTTCTTCTGGCTGAT...GATTACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCAAAGAATGATGAAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp GTTTGGCTTAAGCCATCAAACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTATTTTACGAATGCAGTaGTTCTGTTCTGTGTTAGCA +
Preference number: 4 (lower is better)
Translates to: VWLKPSNLQVLCVCLSLCILRMQ*FCSVLA
Trigger: TGCTAACACAGAACAGAATCACTGCATTCGTAAAAT...ACAGAGAGACAGACAAACACATAATACTTGCAGGTTTGATGGCTTAAGCCAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TCCTCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGCTTGTAAGCGCCATTaGACATTTGGTGTATTCTTT +
Preference number: 4 (lower is better)
Translates to: SSLIHATRRSSLSLRMGQACKRH*TFGVFF
Trigger: AAAGAATACACCAAATGTGCAATGGCGCTTACAAGC...CTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGAGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTAGCTCCCAGCCAGACTaGACATACAATAACTTGGAT +
Preference number: 4 (lower is better)
Translates to: LEWVRILLSLSVQREKCFSSQPD*TYNNLD
Trigger: ATCCAAGTTATTGTATGTGCAGTCTGGCTGGGAGCT...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CCA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTATCAGCCAGAAGAAGTaGAATGTTCAGGAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: LEWVRILLSLSVQREKCFISQKK*NVQEPE
Trigger: TTCTGGCTCCTGAACATTCCACTTCTTCTGGCTGAT...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTGCAGTTTGTCTCTTTaGTTCATATTCACTCTGTCC +
Preference number: 4 (lower is better)
Translates to: CRIRLELCAFQSICVCVYCSLSL*FIFTLS
Trigger: GGACAGAGTGAATATGAACCAAAGAGACAAACTGCA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CAA 72 bp GCCTGGCTGTATTCTGAAGCTTGTTCCTTCCAACAATaGTGTGTGTATATATATGTATGTGTGTTATGTGAG +
Preference number: 4 (lower is better)
Translates to: AWLYSEACSFQQ*CVYIYVCVLCE
Trigger: CTCACATAACACACATACATATATATACACACACAATTGTTGGAAGGAACAAGCTTCAGAATACAGCCAGGC
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp TCCTCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGATTTTACGAATGCAGTaGTTCTGTTCTGTGTTAGCA +
Preference number: 4 (lower is better)
Translates to: SSLIHATRRSSLSLRMGQILRMQ*FCSVLA
Trigger: TGCTAACACAGAACAGAATCACTGCATTCGTAAAAT...CTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGCAAGAACCACAATTGTaGATGCAGAGAAGAACAAGG +
Preference number: 4 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVQEPQL*MQRRTR
Trigger: CCTTGTTCTTCTCTGCATTCACAATTGTGGTTCTTG...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR TCA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTACGAGCATTGGAAGATaGTTTCACCCTGATCATTTC +
Preference number: 4 (lower is better)
Translates to: LEWVRILLSLSVQREKCFTSIGR*FHPDHF
Trigger: GAAATGATCAGGGTGAAATCATCTTCCAATGCTCGT...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR GCA 90 bp TCCTCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGAAATTTCACAGTTGTTaGCCAATTCAGGCTTGTAAG +
Preference number: 4 (lower is better)
Translates to: SSLIHATRRSSLSLRMGQKFHSC*PIQACK
Trigger: CTTACAAGCCTGAATTGGGCAACAACTGTGAAATTT...CTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp GAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTAGATACCAGATACTCATCTaGGCATTTGACAGAGTTCAA +
Preference number: 4 (lower is better)
Translates to: EWVRILLSLSVQREKCFRYQILI*AFDRVQ
Trigger: TTGAACTCTGTCAAATGCCCAGATGAGTATCTGGTA...TCTAAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTACCAGATACTCATCTaGGCATTTGACAGAGTTCAA +
Preference number: 4 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDYQILI*AFDRVQ
Trigger: TTGAACTCTGTCAAATGCCCAGATGAGTATCTGGTA...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACAAATCCAAGGCCATGTaGGAAATTCCAAATGTAGAA +
Preference number: 4 (lower is better)
Translates to: CRIRLELCAFQSICVCVYKSKAM*EIPNVE
Trigger: TTCTACATTTGGAATTTCCCACATGGCCTTGGATTT...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
3UTR CAA 72 bp AGAAAGTACTTCATCATTCTTTGGGAGGCTATGATTTaGAATGCCAGAACTACAGTAATCGTTTTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: RKYFIILWEAMI*NARTTVIVLAK
Trigger: CTTGGCTAAAACGATTACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCAAAGAATGATGAAGTACTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR TCA 90 bp TCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTCATTGGAATCATGTTaGCAAAAGCAAAGCAGATTG +
Preference number: 4 (lower is better)
Translates to: SLIHATRRSSLSLRMGQDSLESC*QKQSRL
Trigger: CAATCTGCTTTGCTTTTGTCAACATGATTCCAATGA...ATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATGGCTATGATTTTGAATaGCAGAACTACAGTAATCGT +
Preference number: 4 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNGYDFE*QNYSNR
Trigger: ACGATTACTGTAGTTCTGGCATTCAAAATCATAGCC...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR GCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGATGATGATCTGTCCATaGTCAGATTGTCCATCAATA +
Preference number: 4 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVMMICP*SDCPSI
Trigger: TATTGATGGACAATCTGAGCATGGACAGATCATCAT...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGCCAGATATCTCACTATaGTGTTGTCCAAAAGCAAAA +
Preference number: 4 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVPDISL*CCPKAK
Trigger: TTTTGCTTTTGGACAACACCATAGTGAGATATCTGG...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CCA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTGCACATACAATAACTTaGATGAGAATACAAACGGGA +
Preference number: 4 (lower is better)
Translates to: LEWVRILLSLSVQREKCFAHTIT*MRIQTG
Trigger: TCCCGTTTGTATTCTCATCCAAGTTATTGTATGTGC...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
3UTR CAA 72 bp TGTAACTACAAATTTCTGTCTGCCAGTAAGAGAAATTaGCTGAAAGATTACCTTGCTACCTTACAATTGGTT +
Preference number: 4 (lower is better)
Translates to: CNYKFLSASKRN*LKDYLATLQLV
Trigger: AACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGCAGACAGAAATTTGTAGTTACA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR GCA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGCAACAATTTTACGAATaGAGTGATTCTGTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVQQFYE*SDSVLC
Trigger: ACACAGAACAGAATCACTGCATTCGTAAAATTGTTG...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp GTTTGCTGTCCCAGGTATGGGCATACTGGGTGGCTGGGAATGGGAAGCAGCCTTTCTTTCCCATTGTCCTaGGGCAGATTATCAAACTTT +
Preference number: 5 (lower is better)
Translates to: VCCPRYGHTGWLGMGSSLSFPLS*GRLSNF
Trigger: AAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGA...AAGGCTGCTTCCCATTCCCAGCCACCCAGTATGCCCATACCTGGGACAGCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp CTGTTATTGGCCTTAACAACTGGAGTACTGTGGTGCTTCACAATGACCCCAAGACTGCAGTTTGTCTCTTaGGTTCATATTCACTCTGTC +
Preference number: 5 (lower is better)
Translates to: LLLALTTGVLWCFTMTPRLQFVS*VHIHSV
Trigger: GACAGAGTGAATATGAACCAAAGAGACAAACTGCAG...TCTTGGGGTCATTGTGAAGCACCACAGTACTCCAGTTGTTAAGGCCAATAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATCACTGCACACTGAAGTaGGCATCTGTGCACTTCCTT +
Preference number: 5 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNHCTLK*ASVHFL
Trigger: AAGGAAGTGCACAGATGCCAACTTCAGTGTGCAGTG...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CAA 90 bp TGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGTGTGTGTATACTGGGAGGCTATGATTTaGAATGCCAGAACTACAGTA +
Preference number: 5 (lower is better)
Translates to: CRIRLELCAFQSICVCVYWEAMI*NARTTV
Trigger: TACTGTAGTTCTGGCATTCAAAATCATAGCCTCCCA...GTATACACACACACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CAA 90 bp GTTTGGCTTAAGCCATCAAACCTGCAAGTATTATGTGTTTGTCTGTCTCTCTGTCAAATAGGAGAGAAATaGGATACCTTGATCATTGTC +
Preference number: 5 (lower is better)
Translates to: VWLKPSNLQVLCVCLSLCQIGEK*DTLIIV
Trigger: GACAATGATCAAGGTATCCAATTTCTCTCCTATTTG...ACAGAGAGACAGACAAACACATAATACTTGCAGGTTTGATGGCTTAAGCCAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp CATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTCTATTATCTATCTCACTATGGTGTaGTCCAAAAGCAAAAGTCCC +
Preference number: 5 (lower is better)
Translates to: HATRRSSLSLRMGQDSIIYLTMV*SKSKSP
Trigger: GGGACTTTTGCTTTTGGACAACACCATAGTGAGATA...GATAATAGAATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp TCCTCTTTAATCCATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGTCTTTCCCATTGTCCTaGGGCAGATTATCAAACTTT +
Preference number: 5 (lower is better)
Translates to: SSLIHATRRSSLSLRMGQSFPLS*GRLSNF
Trigger: AAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGA...CTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATGGATTAAAGAGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp GAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTAGACTGCAGTTTGTCTCTTaGGTTCATATTCACTCTGTC +
Preference number: 5 (lower is better)
Translates to: EWVRILLSLSVQREKCFRLQFVS*VHIHSV
Trigger: GACAGAGTGAATATGAACCAAAGAGACAAACTGCAG...TCTAAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp CATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTCTATTATCTCTGTGCACTTCCTTTaGCCCACTCTATCATATCTT +
Preference number: 5 (lower is better)
Translates to: HATRRSSLSLRMGQDSIISVHFL*PTLSYL
Trigger: AAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGA...GATAATAGAATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS TCA 90 bp ACATTTGTCTCGTTAGAAATTTCATTTTCAGGACAAGGTTTGCAATaGAAACAGCATGCTGCCATTCCGTCCATCCTGAATTTTCTAGAT +
Preference number: 5 (lower is better)
Translates to: TFVSLEISFSGQGLQ*KQHAAIPSILNFLD
Trigger: ATCTAGAAAATTCAGGATGGACGGAATGGCAGCATGCTGTTTTCATTGCAAACCTTGTCCTGAAAATGAAATTTCTAACGAGACAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CAA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTTTGTGTTCTTTCCCATaGTCCTTGGGCAGATTATCA +
Preference number: 5 (lower is better)
Translates to: LEWVRILLSLSVQREKCFLCSFP*SLGRLS
Trigger: TGATAATCTGCCCAAGGACAATGGGAAAGAACACAA...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp GCCAGTAAGAGAAATTTGCTGAAAGATTACCTTGCTACCTTACAATTGGTTAATTCTGTGCACTTCCTTTaGCCCACTCTATCATATCTT +
Preference number: 5 (lower is better)
Translates to: ASKRNLLKDYLATLQLVNSVHFL*PTLSYL
Trigger: AAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGA...ATTAACCAATTGTAAGGTAGCAAGGTAATCTTTCAGCAAATTTCTCTTACTGGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp CATGCTACTAGAAGATCTTCTCTAAGTCTTAGAATGGGTCAGGATTCTATTATCGATTCCCAGACACAATaGTGTACTGAGAATTCAAAT +
Preference number: 5 (lower is better)
Translates to: HATRRSSLSLRMGQDSIIDSQTQ*CTENSN
Trigger: ATTTGAATTCTCAGTACACAATTGTGTCTGGGAATC...GATAATAGAATCCTGACCCATTCTAAGACTTAGAGAAGATCTTCTAGTAGCATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTTGCACATACAATAACTaGGATGAGAATACAAACGGG +
Preference number: 5 (lower is better)
Translates to: LEWVRILLSLSVQREKCFCTYNN*DENTNG
Trigger: CCCGTTTGTATTCTCATCCAAGTTATTGTATGTGCA...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS-3UTR CAA 90 bp TTAGAATGGGTCAGGATTCTATTATCTCTTTCTGTCCAAAGGGAAAAGTGTTTTGATTCCCAGACACAATaGTGTACTGAGAATTCAAAT +
Preference number: 5 (lower is better)
Translates to: LEWVRILLSLSVQREKCFDSQTQ*CTENSN
Trigger: ATTTGAATTCTCAGTACACAATTGTGTCTGGGAATC...AAAACACTTTTCCCTTTGGACAGAAAGAGATAATAGAATCCTGACCCATTCTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGCAAATAGGAGAGAAATaGGATACCTTGATCATTGTC +
Preference number: 5 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVQIGEK*DTLIIV
Trigger: GACAATGATCAAGGTATCCAATTTCTCTCCTATTTG...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS-3UTR CAA 90 bp TATAAACTTCATGTAGGATTAGGTTGGAACTTTGTGCCTTCCAAAGTATATGTGGTACTTCATCATTCTTaGGGAGGCTATGATTTTGAA +
Preference number: 5 (lower is better)
Translates to: YKLHVGLGWNFVPSKVYVVLHHS*GGYDFE
Trigger: TTCAAAATCATAGCCTCCCAAAGAATGATGAAGTAC...CACATATACTTTGGAAGGCACAAAGTTCCAACCTAATCCTACATGAAGTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS TCA 72 bp ACTCTTTCTCCACAGGCCGTTGTACTGCATGAATCATaGAGGTACATCCTGTTCCCTGGTTTCTGTCCCTGT +
Preference number: 6 (lower is better)
Translates to: TLSPQAVVLHES*RYILFPGFCPC
Trigger: ACAGGGACAGAAACCAGGGAACAGGATGTACCTTCATGATTCATGCAGTACAACGGCCTGTGGAGAAAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS TCA 72 bp TCTGAGATGACCAACCCTACCCAGTTCCAACCGAAATaGATTATGAAGGATACCAGGCCAAAGGCTAGAGAT +
Preference number: 6 (lower is better)
Translates to: SEMTNPTQFQPK*IMKDTRPKARD
Trigger: ATCTCTAGCCTTTGGCCTGGTATCCTTCATAATTCATTTCGGTTGGAACTGGGTAGGGTTGGTCATCTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS TCA 72 bp CTAAAATACTCTTTCTCCACAGGCCGTTGTACTGCATaGATCATGAAGGTACATCCTGTTCCCTGGTTTCTG +
Preference number: 6 (lower is better)
Translates to: LKYSFSTGRCTA*IMKVHPVPWFL
Trigger: CAGAAACCAGGGAACAGGATGTACCTTCATGATTCATGCAGTACAACGGCCTGTGGAGAAAGAGTATTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 90 bp CACAATCAGCACTGCACACTGAAGTTGGCATCTGTGCACTTCCTTTaGCCCACTCTATCATATCTTCAGATAAATGTACCTGTTGACCAT +
Preference number: 6 (lower is better)
Translates to: HNQHCTLKLASVHFL*PTLSYLQINVPVDH
Trigger: ATGGTCAACAGGTACATTTATCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGATGCCAACTTCAGTGTGCAGTGCTGATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS TCA 72 bp CAAATAGGAGAGAAATTGGATACCTTGATCATTGTCTaGGATGACCAACCCTACCCAGTTCCAACCGAAATG +
Preference number: 6 (lower is better)
Translates to: QIGEKLDTLIIV*DDQPYPVPTEM
Trigger: CATTTCGGTTGGAACTGGGTAGGGTTGGTCATCTCAGACAATGATCAAGGTATCCAATTTCTCTCCTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 72 bp CACTGCACACTGAAGTTGGCATCTGTGCACTTCCTTTaGCCCACTCTATCATATCTTCAGATAAATGTACCT +
Preference number: 6 (lower is better)
Translates to: HCTLKLASVHFL*PTLSYLQINVP
Trigger: AGGTACATTTATCTGAAGATATGATAGAGTGGGCAAAAGGAAGTGCACAGATGCCAACTTCAGTGTGCAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS CCA 72 bp AAAGTGCATCCATTCCAGCTTTACCAGATACTCATCTaGGCATTTGACAGAGTTCAATGTCTGGACAAAATG +
Preference number: 6 (lower is better)
Translates to: KVHPFQLYQILI*AFDRVQCLDKM
Trigger: CATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAGTATCTGGTAAAGCTGGAATGGATGCACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 72 bp TTCTTTCCCATTGTCCTTGGGCAGATTATCAAACTTTaGAAAAGTTATCTGATGGAGTGCGTGGGCAAAAGC +
Preference number: 6 (lower is better)
Translates to: FFPIVLGQIIKL*KSYLMECVGKS
Trigger: GCTTTTGCCCACGCACTCCATCAGATAACTTTTCAAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 72 bp TTTACGAATGCAGTGATTCTGTTCTGTGTTAGCATATaGGTCCTCCAGACACTGGACACAATAATCCACATC +
Preference number: 6 (lower is better)
Translates to: FTNAVILFCVSI*VLQTLDTIIHI
Trigger: GATGTGGATTATTGTGTCCAGTGTCTGGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234796.2
CDS TCA 72 bp TCGTTAGAAATTTCATTTTCAGGACAAGGTTTGCAATaGAAACAGCATGCTGCCATTCCGTCCATCCTGAAT +
Preference number: 6 (lower is better)
Translates to: SLEISFSGQGLQ*KQHAAIPSILN
Trigger: ATTCAGGATGGACGGAATGGCAGCATGCTGTTTTCATTGCAAACCTTGTCCTGAAAATGAAATTTCTAACGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168175.3
CDS GCA 72 bp CACAGTTGTTGCCCAATTCAGGCTTGTAAGCGCCATTaGACATTTGGTGTATTCTTTACACAAATAATTAGG +
Preference number: 6 (lower is better)
Translates to: HSCCPIQACKRH*TFGVFFTQIIR
Trigger: CCTAATTATTTGTGTAAAGAATACACCAAATGTGCAATGGCGCTTACAAGCCTGAATTGGGCAACAACTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 90 bp ATAATTGTGTTCTTTCCCATTGTCCTTGGGCAGATTATCAAACTTTaGAAAAGTTATCTGATGGAGTGCGTGGGCAAAAGCATAAACAGC +
Preference number: 6 (lower is better)
Translates to: IIVFFPIVLGQIIKL*KSYLMECVGKSINS
Trigger: GCTGTTTATGCTTTTGCCCACGCACTCCATCAGATAACTTTTCAAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGAACACAATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 90 bp ATTCCAAATGTAGAAAATGTCATACTCTTCCTGCAGTTTGTCTCTTaGGTTCATATTCACTCTGTCCCCAACAGGATTAATGAACTGGGT +
Preference number: 6 (lower is better)
Translates to: IPNVENVILFLQFVS*VHIHSVPNRINELG
Trigger: ACCCAGTTCATTAATCCTGTTGGGGACAGAGTGAATATGAACCAAAGAGACAAACTGCAGGAAGAGTATGACATTTTCTACATTTGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CCA 72 bp AGATACTCATCTGGGCATTTGACAGAGTTCAATGTCTaGACAAAATGTTTAAACCCAGATATCTCACTATGG +
Preference number: 6 (lower is better)
Translates to: RYSSGHLTEFNV*TKCLNPDISLW
Trigger: CCATAGTGAGATATCTGGGTTTAAACATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAGTATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 72 bp ATCCATTCCAGCTTTACCAGATACTCATCTGGGCATTaGACAGAGTTCAATGTCTGGACAAAATGTTTAAAC +
Preference number: 6 (lower is better)
Translates to: IHSSFTRYSSGH*TEFNVWTKCLN
Trigger: GTTTAAACATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAGTATCTGGTAAAGCTGGAATGGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2
CDS CAA 72 bp ATTAGAGACATATTTGGCAAAATATCAGGGTTCATGTaGATTTCATATATGGAAAAAGCCAAAGCCAGAGCA +
Preference number: 6 (lower is better)
Translates to: IRDIFGKISGFM*ISYMEKAKARA
Trigger: TGCTCTGGCTTTGGCTTTTTCCATATATGAAATCAACATGAACCCTGATATTTTGCCAAATATGTCTCTAAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168175.3
ENSMUST00000234796.2