RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN2R111 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095093

Ensembl transcript IDs: ENSMUST00000092491.7, ENSMUST00000234027.2, ENSMUST00000234223.2, ENSMUST00000234296.2

Found 269 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATaGCCCAGTACAGGGAAATGCCAGGGCCAAAAAGGGGGAGTGGGT +
Preference number: 1 (lower is better)
Translates to: SHHCKERPFGFANFI*PSTGKCQGQKGGVG
Trigger: ACCCACTCCCCCTTTTTGGCCCTGGCATTTCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 90 bp ATCAAAAGATGGCCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTaGATTTGCAAACTTTATATGCCCCAGTACAGGGAAATGCCAGGG +
Preference number: 1 (lower is better)
Translates to: IKRWPSQPSLQREAL*ICKLYMPQYREMPG
Trigger: CCCTGGCATTTCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 90 bp ACTGAACCCTTGTGGCAAACAATGATGATGTGGCCATGTTCAGATTaGGCATCAATATCAACAGAAGGAGGAGAAGCTCCCAGCCAAACT +
Preference number: 1 (lower is better)
Translates to: TEPLWQTMMMWPCSD*ASISTEGGEAPSQT
Trigger: AGTTTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATTGATGCTCAATCTGAACATGGCCACATCATCATTGTTTGCCACAAGGGTTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 90 bp GTTGGGGGCAACAGGGGGACTTCTAGAAAGTCCCAGTCTCACATCTaGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAGAT +
Preference number: 1 (lower is better)
Translates to: VGGNRGTSRKSQSHI*NVRVFLNSIWITLD
Trigger: ATCTAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGACTTTCTAGAAGTCCCCCTGTTGCCCCCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR GCA 90 bp TCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTaGAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGT +
Preference number: 1 (lower is better)
Translates to: SLAAYVSKDGLVSHH*KERPFGFANFICPS
Trigger: ACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 90 bp GATGAGCAAGATGTAGGTGAGAGTCCTGTTATTGGCCTTAACAATTaGAGTATTGTGGTGCTTCACAATGACCCCGAGAATCACAGTTGT +
Preference number: 1 (lower is better)
Translates to: DEQDVGESPVIGLNN*SIVVLHNDPENHSC
Trigger: ACAACTGTGATTCTCGGGGTCATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGACTCTCACCTACATCTTGCTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR TCA 90 bp ACAAGGAGAATAAGGAAAGTGCCATCCCCAGTGGTTCTTCATAGTTaGGAAATACAACAGCTTTATGAATGCAGTGATTCTGTTCTGTGT +
Preference number: 1 (lower is better)
Translates to: TRRIRKVPSPVVLHS*EIQQLYECSDSVLC
Trigger: ACACAGAACAGAATCACTGCATTCATAAAGCTGTTGTATTTCTCAACTATGAAGAACCACTGGGGATGGCACTTTCCTTATTCTCCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR GCA 90 bp TTGAGCATCAATATCAACAGAAGGAGGAGAAGCTCCCAGCCAAACTaGACATACAATAACTTGGATGAGAGTACAAATGAGAATGATGTA +
Preference number: 1 (lower is better)
Translates to: LSININRRRRSSQPN*TYNNLDESTNENDV
Trigger: TACATCATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATTGATGCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 90 bp TTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATTGGTCCTCTaGACACTGGGCACAATTATCCACATCCTTGATGTTGGCAATAAT +
Preference number: 1 (lower is better)
Translates to: FMNAVILFCVSILVL*TLGTIIHILDVGNN
Trigger: ATTATTGCCAACATCAAGGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR CCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTACCCAAGGTCCCCAGTaGTGGCATGGGTCTACACAC +
Preference number: 2 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAATQGPQ*WHGSTH
Trigger: GTGTGTAGACCCATGCCACCACTGGGGACCTTGGGT...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAACCCAAGGTCCCCAGTaGTGGCATGGGTCTACACAC +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLTQGPQ*WHGSTH
Trigger: GTGTGTAGACCCATGCCACCACTGGGGACCTTGGGT...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAGGGTGTGTAGGAGGTTaGGGTGGTGAGTATGGGGGA +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLGCVGG*GGEYGG
Trigger: TCCCCCATACTCACCACCCCAACCTCCTACACACCC...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAGCCAAAAAGGGGGAGTaGGTGTGTAGGAGGTTGGGG +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLAKKGE*VCRRLG
Trigger: CCCCAACCTCCTACACACCCACTCCCCCTTTTTGGC...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCACCAACCCATGTCAGCTaGTGTCAGCACAGACTCTCA +
Preference number: 2 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAPTHVS*CQHRLS
Trigger: TGAGAGTCTGTGCTGACATCAGCTGACATGGGTTGG...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCAGTACAGGGAAATaGCAGGGCCAAAAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: PSQPSLQREALWICKLYMPSTGK*QGQKGG
Trigger: TCCCCCTTTTTGGCCCTGGCATTTCCCTGTACTGGG...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGCACCCCAGCATCCCTaGACTGGAAGCCAAAGTGGA +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITAPQHP*TGSQSG
Trigger: TCCACTTTGGCTTCCAGTGCAGGGATGCTGGGGTGC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGGGTGTGTAGGAGGTTaGGGTGGTGAGTATGGGGGA +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITGCVGG*GGEYGG
Trigger: TCCCCCATACTCACCACCCCAACCTCCTACACACCC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCCCAGCATCCCTGCACTaGAAGCCAAAGTGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFPASLH*KPKWRR
Trigger: TCTTCTCCACTTTGGCTTCCAGTGCAGGGATGCTGG...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTGGTCCTCTGGACACTaGGCACAATTATCCACATCC +
Preference number: 2 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDAWSSGH*AQLSTS
Trigger: GGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR TCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTAATCCTGTAGAGGATTaGTGTCCCAGGGAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTNPVED*CPREGG
Trigger: TCCCCCTTCCCTGGGACATCAATCCTCTACAGGATT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTAGCAGAGGACTGACTTaGCAGACTTTTGTGGAAGAG +
Preference number: 2 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAASRGLT*QTFVEE
Trigger: CTCTTCCACAAAAGTCTGTCAAGTCAGTCCTCTGCT...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCGTTGTAGAATGCAGGTaGCTGAGTTTGGATGGCCAA +
Preference number: 2 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDAVVECR*LSLDGQ
Trigger: TTGGCCATCCAAACTCAGTCACCTGCATTCTACAAC...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTGTGACCAGTCTAACTTaGGTTCTAGTCCACACTCAG +
Preference number: 2 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAAVTSLT*VLVHTQ
Trigger: CTGAGTGTGGACTAGAACCCAAGTTAGACTGGTCAC...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACAAGCAGTTGTTGGGGCTaGGTATTGTGTCAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: HHCKERPFGFANFICPSTSSCWG*VLCQFL
Trigger: GAGGAACTGACACAATACTCAGCCCCAACAACTGCT...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAAGCAGTTGTTGGGGCTaGGTATTGTGTCAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLSSCWG*VLCQFL
Trigger: GAGGAACTGACACAATACTCAGCCCCAACAACTGCT...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCCTGTGGTGTCAAAGCTaGTCTTTAGCACAGACTCAT +
Preference number: 2 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDALWCQS*SLAQTH
Trigger: ATGAGTCTGTGCTAAAGATCAGCTTTGACACCACAG...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTTAGAACCTGATGTATaGGCTTGGCTTCAGCCATCA +
Preference number: 2 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDALEPDV*AWLQPS
Trigger: TGATGGCTGAAGCCAAGCTCATACATCAGGTTCTAA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGAATCCTGTAGAGGATTaGTGTCCCAGGGAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: LSSMNFYQQLTETDANNKNPVED*CPREGG
Trigger: TCCCCCTTCCCTGGGACATCAATCCTCTACAGGATT...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTAAACAGGATCAGGTATaGTGGGCAAAAGAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAAKQDQV*WAKERR
Trigger: CCTTCTCTCTTTTGCCCATCATACCTGATCCTGTTT...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCACGAGAATCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 2 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPARESQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGATTCTCG...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR GCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTGCACCCCAGCATCCCTaGACTGGAAGCCAAAGTGGA +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESAPQHP*TGSQSG
Trigger: TCCACTTTGGCTTCCAGTGCAGGGATGCTGGGGTGC...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCTTTCTGGGTGTGTTTTaGGGCTTGTTCCTTCCACCA +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFFLGVF*GLFLPP
Trigger: TGGTGGAAGGAACAAGCCCCAAAACACACCCAGAAA...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCGTGACCAGTCTAACTTaGGTTCTAGTCCACACTCAG +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFVTSLT*VLVHTQ
Trigger: CTGAGTGTGGACTAGAACCCAAGTTAGACTGGTCAC...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTACAAGGTCCCCAGTGGTaGCATGGGTCTACACACCCA +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLQGPQW*HGSTHP
Trigger: TGGGTGTGTAGACCCATGCCACCACTGGGGACCTTG...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGAGCAGTTGTTGGGGCTaGGTATTGTGTCAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: LSSMNFYQQLTETDANNKSSCWG*VLCQFL
Trigger: GAGGAACTGACACAATACTCAGCCCCAACAACTGCT...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTAGCAGAGGACTGACTTaGCAGACTTTTGTGGAAGAG +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTSRGLT*QTFVEE
Trigger: CTCTTCCACAAAAGTCTGTCAAGTCAGTCCTCTGCT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp GCATGGAAAGATGATTTCACCCTGGTCATTTCAACAGAATTTCGGTCTGGTCTAAGTTTGGATGGCCAATaGAGAGCAAGGGACAGAGGA +
Preference number: 2 (lower is better)
Translates to: AWKDDFTLVISTEFRSGLSLDGQ*RARDRG
Trigger: TCCTCTGTCCCTTGCTCTTCATTGGCCATCCAAACT...TAGACCAGACCGAAATTCTGTTGAAATGACCAGGGTGAAATCATCTTTCCATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTACCAGCTACCTGTCTTaGGTTACTCTGTGGTGTCAA +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTTSYLS*VTLWCQ
Trigger: TTGACACCACAGAGTAACCCAAGACAGGTAGCTGGT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGACCAGCTACCTGTCTTaGGTTACTCTGTGGTGTCAA +
Preference number: 2 (lower is better)
Translates to: PSQPSLQREALWICKLYMTSYLS*VTLWCQ
Trigger: TTGACACCACAGAGTAACCCAAGACAGGTAGCTGGT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTATGGGAAGAAGAATTCTaGAGTGAGGACCAGGAAGGA +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLWEEEF*SEDQEG
Trigger: TCCTTCCTGGTCCTCACTCCAGAATTCTTCTTCCCA...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCCAAACGTGTGGGAGATaGGACAGTATGGGGAAAAGG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITQTCGR*DSMGKR
Trigger: CCTTTTCCCCATACTGTCCCATCTCCCACACGTTTG...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCCACTGGAAGCCAAAGTaGAGAAGATCTCCACAGCCA +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITHWKPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCACTTTGGCTTCCAGTG...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATAAGTGCCATCCCCAGTaGTTCTTCATAGTTGAGAAA +
Preference number: 2 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHKCHPQ*FFIVEK
Trigger: TTTCTCAACTATGAAGAACCACTGGGGATGGCACTT...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR TCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTCCAACCCATGTCAGCTaGTGTCAGCACAGACTCTCA +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESPTHVS*CQHRLS
Trigger: TGAGAGTCTGTGCTGACATCAGCTGACATGGGTTGG...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTACCAACCCATGTCAGCTaGTGTCAGCACAGACTCTCA +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLPTHVS*CQHRLS
Trigger: TGAGAGTCTGTGCTGACATCAGCTGACATGGGTTGG...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGTGTCTGTGAATGTTTaGATCTCCCCCTCTTTTTCT +
Preference number: 2 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAVSVNV*ISPSFS
Trigger: AGAAAAAGAGGGGGAGATTCAAACATTCACAGACAC...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGGTGTGCTTGTGTCTGTaGATGTTTGAATCTCCCCCT +
Preference number: 2 (lower is better)
Translates to: LSSMNFYQQLTETDANNKVCLCL*MFESPP
Trigger: AGGGGGAGATTCAAACATTCACAGACACAAGCACAC...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTTTAGAACCTGATGTATaGGCTTGGCTTCAGCCATCA +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTLEPDV*AWLQPS
Trigger: TGATGGCTGAAGCCAAGCTCATACATCAGGTTCTAA...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGTATGTAGCAGAGGACTaGCTTGACAGACTTTTGTGG +
Preference number: 2 (lower is better)
Translates to: PSQPSLQREALWICKLYMYVAED*LDRLLW
Trigger: CCACAAAAGTCTGTCAAGTCAGTCCTCTGCTACATA...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACATATGTAGCAGAGGACTaGCTTGACAGACTTTTGTGG +
Preference number: 2 (lower is better)
Translates to: HHCKERPFGFANFICPSTYVAED*LDRLLW
Trigger: CCACAAAAGTCTGTCAAGTCAGTCCTCTGCTACATA...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAAAATGGAGCAAAGACTaGAGGAAAGGCCATCTAGTG +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLKWSKD*RKGHLV
Trigger: CACTAGATGGCCTTTCCTTCAGTCTTTGCTCCATTT...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACAACGAGCATGGAAAGATaGTTTCACCCTGGTCATTTC +
Preference number: 2 (lower is better)
Translates to: HHCKERPFGFANFICPSTTSMER*FHPGHF
Trigger: GAAATGACCAGGGTGAAATCATCTTTCCATGCTCGT...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCACCAGCTACCTGTCTTaGGTTACTCTGTGGTGTCAA +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITTSYLS*VTLWCQ
Trigger: TTGACACCACAGAGTAACCCAAGACAGGTAGCTGGT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCAAAAATATGGGAGACTaGAGGAAGGACAAACGTGTG +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFKNMGD*RKDKRV
Trigger: CACACGTTTGTCCTTCCTCCAGTCTCCCATATTTTT...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTAGCAGTTGTTGGGGCTaGGTATTGTGTCAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESSSCWG*VLCQFL
Trigger: GAGGAACTGACACAATACTCAGCCCCAACAACTGCT...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAGAACCTGATGTATaGGCTTGGCTTCAGCCATCA +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITLEPDV*AWLQPS
Trigger: TGATGGCTGAAGCCAAGCTCATACATCAGGTTCTAA...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTATGTAGCAGAGGACTaGCTTGACAGACTTTTGTGG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITYVAED*LDRLLW
Trigger: CCACAAAAGTCTGTCAAGTCAGTCCTCTGCTACATA...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGTATGTAGCAGAGGACTaGCTTGACAGACTTTTGTGG +
Preference number: 2 (lower is better)
Translates to: LSSMNFYQQLTETDANNKYVAED*LDRLLW
Trigger: CCACAAAAGTCTGTCAAGTCAGTCCTCTGCTACATA...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCAAACAGGATCAGGTATaGTGGGCAAAAGAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITKQDQV*WAKERR
Trigger: CCTTCTCTCTTTTGCCCATCATACCTGATCCTGTTT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAAGTTTGGATGGCCAATaGAGAGCAAGGGACAGAGGA +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLSLDGQ*RARDRG
Trigger: TCCTCTGTCCCTTGCTCTTCATTGGCCATCCAAACT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATATACAACTCCAAATGTaGTTTGTTGTAGAATGCAGG +
Preference number: 2 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHIQLQM*FVVECR
Trigger: CCTGCATTCTACAACAAATCACATTTGGAGTTGTAT...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCAACAAAGGTCATACATaGTATGGGCCATGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITNKGHT*YGPWSL
Trigger: CAGAGACCATGGCCCATACCATGTATGACCTTTGTT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTATTGACTGAACCCTTGTaGCAAACAATGATGATGTGG +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLLTEPL*QTMMMW
Trigger: CCACATCATCATTGTTTGCCACAAGGGTTCAGTCAA...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGTGTCTGTGAATGTTTaGATCTCCCCCTCTTTTTCT +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITVSVNV*ISPSFS
Trigger: AGAAAAAGAGGGGGAGATTCAAACATTCACAGACAC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGTGGAACCTGTCTGTTTaGACTTTCTTATATCTACCG +
Preference number: 2 (lower is better)
Translates to: PSQPSLQREALWICKLYMWNLSV*TFLYLP
Trigger: CGGTAGATATAAGAAAGTTCAAACAGACAGGTTCCA...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCTCTTTTATATATAAATaGGAGGGGGTTGGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFSFIYK*EGVGKK
Trigger: CTTCTTCCCAACCCCCTCTCATTTATATATAAAAGA...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCATACAACTCCAAATGTaGTTTGTTGTAGAATGCAGG +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFIQLQM*FVVECR
Trigger: CCTGCATTCTACAACAAATCACATTTGGAGTTGTAT...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCGGCTGTGATTTTGAATaGCAGAACTACAACAATTGT +
Preference number: 2 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFGCDFE*QNYNNC
Trigger: ACAATTGTTGTAGTTCTGGCATTCAAAATCACAGCC...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTACCAGCTACCTGTCTTaGGTTACTCTGTGGTGTCAA +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESTSYLS*VTLWCQ
Trigger: TTGACACCACAGAGTAACCCAAGACAGGTAGCTGGT...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATGGGAAGAAGAATTCTaGAGTGAGGACCAGGAAGGA +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLWEEEF*SEDQEG
Trigger: TCCTTCCTGGTCCTCACTCCAGAATTCTTCTTCCCA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCACTGTGTAGTTGGGAATaGGAAGCACTCTTTTATATA +
Preference number: 2 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPALCSWE*EALFYI
Trigger: TATATAAAAGAGTGCTTCCCATTCCCAACTACACAG...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGATTGGCCTTAACAATTaGAGTATTGTGGTGCTTCAC +
Preference number: 2 (lower is better)
Translates to: PSQPSLQREALWICKLYMIGLNN*SIVVLH
Trigger: GTGAAGCACCACAATACTCCAATTGTTAAGGCCAAT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTATTGGCCTTAACAATTaGAGTATTGTGGTGCTTCAC +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTIGLNN*SIVVLH
Trigger: GTGAAGCACCACAATACTCCAATTGTTAAGGCCAAT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTGACTGAACCCTTGTaGCAAACAATGATGATGTGG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITLTEPL*QTMMMW
Trigger: CCACATCATCATTGTTTGCCACAAGGGTTCAGTCAA...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CAA 90 bp TACAACAGCTTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATaGGTCCTCTGGACACTGGGCACAATTATCCACATCCTTGATGTT +
Preference number: 2 (lower is better)
Translates to: YNSFMNAVILFCVSI*VLWTLGTIIHILDV
Trigger: AACATCAAGGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAAGCTGTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTGGAACCTGTCTGTTTaGACTTTCTTATATCTACCG +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITWNLSV*TFLYLP
Trigger: CGGTAGATATAAGAAAGTTCAAACAGACAGGTTCCA...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAACGAGCATGGAAAGATaGTTTCACCCTGGTCATTTC +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLTSMER*FHPGHF
Trigger: GAAATGACCAGGGTGAAATCATCTTTCCATGCTCGT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp GCTCCCAAAGGACAGGAGAGCCAAGTATCCCAGAATAGAGTAAAATGCATTGACGTGTGTCTTATAATGTaGAAAAATAGCTTCAGGTAC +
Preference number: 2 (lower is better)
Translates to: APKGQESQVSQNRVKCIDVCLIM*KNSFRY
Trigger: GTACCTGAAGCTATTTTTGCACATTATAAGACACAC...GTCAATGCATTTTACTCTATTCTGGGATACTTGGCTCTCCTGTCCTTTGGGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAGAGGCCCTTTGGATTTaGAAACTTTATATGCCCCAG +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLEALWI*KLYMPQ
Trigger: CTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTC...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTATATGTAAAGATTTCTaGGTGTGTTTTGGGGCTTGT +
Preference number: 2 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTICKDF*VCFGAC
Trigger: ACAAGCCCCAAAACACACCCAGAAATCTTTACATAT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAGTTGTAGAATGCAGGTaGCTGAGTTTGGATGGCCAA +
Preference number: 2 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLVVECR*LSLDGQ
Trigger: TTGGCCATCCAAACTCAGTCACCTGCATTCTACAAC...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAGTGTGTCTTATAATGTaGAAAAATAGCTTCAGGTAC +
Preference number: 2 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLVCLIM*KNSFRY
Trigger: GTACCTGAAGCTATTTTTGCACATTATAAGACACAC...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCATATGTAAAGATTTCTaGGTGTGTTTTGGGGCTTGT +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITICKDF*VCFGAC
Trigger: ACAAGCCCCAAAACACACCCAGAAATCTTTACATAT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR TCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTTGGCCATGTTCAGATTaGGCATCAATATCAACAGAA +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESWPCSD*ASISTE
Trigger: TTCTGTTGATATTGATGCTCAATCTGAACATGGCCA...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGTGTGTCTTATAATGTaGAAAAATAGCTTCAGGTAC +
Preference number: 2 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITVCLIM*KNSFRY
Trigger: GTACCTGAAGCTATTTTTGCACATTATAAGACACAC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR GCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATTTGCAAACTTTATATaGCCCAGTACAGGGAAATGC +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLFANFI*PSTGKC
Trigger: GCATTTCCCTGTACTGGGGCATATAAAGTTTGCAAA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAATATGTAAAGATTTCTaGGTGTGTTTTGGGGCTTGT +
Preference number: 2 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLICKDF*VCFGAC
Trigger: ACAAGCCCCAAAACACACCCAGAAATCTTTACATAT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CAA 90 bp TCATATCTTCTCATATGTAGATATGTAAAGATTTCTGGGTGTGTTTaGGGGCTTGTTCCTTCCACCAATTGTGTGTATATCTGTATGTGT +
Preference number: 2 (lower is better)
Translates to: SYLLICRYVKISGCV*GLVPSTNCVYICMC
Trigger: ACACATACAGATATACACACAATTGGTGGAAGGAACAAGCCCCAAAACACACCCAGAAATCTTTACATATCTACATATGAGAAGATATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTGCACATACAATAACTTaGATGAGAGTACAAATGAGA +
Preference number: 2 (lower is better)
Translates to: ISEDMVLLGNILRGNSESAHTIT*MRVQMR
Trigger: TCTCATTTGTACTCTCATCCAAGTTATTGTATGTGC...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CAA 90 bp TTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATaGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTTATTCTAAA +
Preference number: 2 (lower is better)
Translates to: LWKIRGSMGISEDMV*LGNILRGNSESYSK
Trigger: TTTAGAATAACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp TTTGTGGAAGAGGGTGCATCTAATCCTGTAGAGGATTaGTGTCCCAGGGAAGGGGGATACTGTGTAGTTGGG +
Preference number: 3 (lower is better)
Translates to: FVEEGASNPVED*CPREGGYCVVG
Trigger: CCCAACTACACAGTATCCCCCTTCCCTGGGACATCAATCCTCTACAGGATTAGATGCACCCTCTTCCACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR GCA 72 bp TGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATaGCCCAGTACAGGGAAATGCCAGGGCCAAAAAGGG +
Preference number: 3 (lower is better)
Translates to: CKERPFGFANFI*PSTGKCQGQKG
Trigger: CCCTTTTTGGCCCTGGCATTTCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 72 bp TGGCCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTaGATTTGCAAACTTTATATGCCCCAGTACAGGGAA +
Preference number: 3 (lower is better)
Translates to: WPSQPSLQREAL*ICKLYMPQYRE
Trigger: TTCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTCACCAGCTACCTGTCTaGGGTTACTCTGTGGTGTCA +
Preference number: 3 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTHQLPV*GYSVVS
Trigger: TGACACCACAGAGTAACCCAAGACAGGTAGCTGGTG...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCACCAGCTACCTGTCTaGGGTTACTCTGTGGTGTCA +
Preference number: 3 (lower is better)
Translates to: PSQPSLQREALWICKLYMHQLPV*GYSVVS
Trigger: TGACACCACAGAGTAACCCAAGACAGGTAGCTGGTG...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 72 bp AATAGACCAACTCCAGTAGTTACCCAAGGTCCCCAGTaGTGGCATGGGTCTACACACCCATCTTCAAATTTT +
Preference number: 3 (lower is better)
Translates to: NRPTPVVTQGPQ*WHGSTHPSSNF
Trigger: AAAATTTGAAGATGGGTGTGTAGACCCATGCCACCACTGGGGACCTTGGGTAACTACTGGAGTTGGTCTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATTATTGTTACAGGTGTTaGGTAACAGCAGTTGTTGGG +
Preference number: 3 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHYCYRC*VTAVVG
Trigger: CCCAACAACTGCTGTTACCAAACACCTGTAACAATA...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTGTGTCTGTGAATGTTaGAATCTCCCCCTCTTTTTC +
Preference number: 3 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDACVCEC*NLPLFF
Trigger: GAAAAAGAGGGGGAGATTCAAACATTCACAGACACA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCAAAGTGGTTGGGACATaGCATTTTGCACCCATTAGC +
Preference number: 3 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFKVVGT*HFAPIS
Trigger: GCTAATGGGTGCAAAATGCAATGTCCCAACCACTTT...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp CATGGTCTCTGGAACATATGTAGCAGAGGACTGACTTaGCAGACTTTTGTGGAAGAGGGTGCATCTAATCCT +
Preference number: 3 (lower is better)
Translates to: HGLWNICSRGLT*QTFVEEGASNP
Trigger: AGGATTAGATGCACCCTCTTCCACAAAAGTCTGTCAAGTCAGTCCTCTGCTACATATGTTCCAGAGACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTGTTCCTTCCACCAATaGTGTGTATATCTGTATGTG +
Preference number: 3 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDACSFHQ*CVYLYV
Trigger: CACATACAGATATACACACAATTGGTGGAAGGAACA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTAAAGTGGTTGGGACATaGCATTTTGCACCCATTAGC +
Preference number: 3 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTKVVGT*HFAPIS
Trigger: GCTAATGGGTGCAAAATGCAATGTCCCAACCACTTT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCCTGAATGTTATGGATTaGGCTTCATTAAAGGCACCA +
Preference number: 3 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDALNVMD*ASLKAP
Trigger: TGGTGCCTTTAATGAAGCCAAATCCATAACATTCAG...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp TTGTGGCAAACAATGATGATGTGGCCATGTTCAGATTaGGCATCAATATCAACAGAAGGAGGAGAAGCTCCC +
Preference number: 3 (lower is better)
Translates to: LWQTMMMWPCSD*ASISTEGGEAP
Trigger: GGGAGCTTCTCCTCCTTCTGTTGATATTGATGCTCAATCTGAACATGGCCACATCATCATTGTTTGCCACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 72 bp GCAGTGATTCTGTTCTGTGTTAGCATATTGGTCCTCTaGACACTGGGCACAATTATCCACATCCTTGATGTT +
Preference number: 3 (lower is better)
Translates to: AVILFCVSILVL*TLGTIIHILDV
Trigger: AACATCAAGGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR CAA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTCTGTCAAAGGAAGATaGTTTGAGAACATTGTGGAA +
Preference number: 3 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDASVKGR*FENIVE
Trigger: TTCCACAATGTTCTCAAACAATCTTCCTTTGACAGA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTATGTGTCTGTGAATGTTaGAATCTCCCCCTCTTTTTC +
Preference number: 3 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLCVCEC*NLPLFF
Trigger: GAAAAAGAGGGGGAGATTCAAACATTCACAGACACA...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCTGTTCCTTCCACCAATaGTGTGTATATCTGTATGTG +
Preference number: 3 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFCSFHQ*CVYLYV
Trigger: CACATACAGATATACACACAATTGGTGGAAGGAACA...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGGCATTGACTGAACCCTaGTGGCAAACAATGATGATG +
Preference number: 3 (lower is better)
Translates to: LSSMNFYQQLTETDANNKALTEP*WQTMMM
Trigger: CATCATCATTGTTTGCCACAAGGGTTCAGTCAATGC...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp GCATGGAAAGATGATTTCACCCTGGTCATTTCAACAGAATTTCGGTCTGGTCTAGCATTGACTGAACCCTaGTGGCAAACAATGATGATG +
Preference number: 3 (lower is better)
Translates to: AWKDDFTLVISTEFRSGLALTEP*WQTMMM
Trigger: CATCATCATTGTTTGCCACAAGGGTTCAGTCAATGC...TAGACCAGACCGAAATTCTGTTGAAATGACCAGGGTGAAATCATCTTTCCATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATCAATTATCCACATCCTaGATGTTGGCAATAATACTC +
Preference number: 3 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHQLSTS*MLAIIL
Trigger: GAGTATTATTGCCAACATCAAGGATGTGGATAATTG...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR TCA 72 bp GTAGTTGGGAATGGGAAGCACTCTTTTATATATAAATaGGAGGGGGTTGGGAAGAAGAATTCTGGAGTGAGG +
Preference number: 3 (lower is better)
Translates to: VVGNGKHSFIYK*EGVGKKNSGVR
Trigger: CCTCACTCCAGAATTCTTCTTCCCAACCCCCTCTCATTTATATATAAAAGAGTGCTTCCCATTCCCAACTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp AGCCAAGTATCCCAGAATAGAGTAAAATGCATTGACTaGACCCTTGTGGCAAACAATGATGATGTGGCCATG +
Preference number: 3 (lower is better)
Translates to: SQVSQNRVKCID*TLVANNDDVAM
Trigger: CATGGCCACATCATCATTGTTTGCCACAAGGGTTCAGTCAATGCATTTTACTCTATTCTGGGATACTTGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR GCA 72 bp GTCCTGTTATTGGCCTTAACAATTGGAGTATTGTGGTaGTTCACAATGACCCCGAGAATCACAGTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: VLLLALTIGVLW*FTMTPRITVVN
Trigger: ATTCACAACTGTGATTCTCGGGGTCATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR CCA 72 bp AACAGGGGGACTTCTAGAAAGTCCCAGTCTCACATCTaGAATGTGAGAGTCTTTCTGAACTCAATATGGATA +
Preference number: 3 (lower is better)
Translates to: NRGTSRKSQSHI*NVRVFLNSIWI
Trigger: TATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGACTTTCTAGAAGTCCCCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 72 bp TTCTGTTCTGTGTTAGCATATTGGTCCTCTGGACACTaGGCACAATTATCCACATCCTTGATGTTGGCAATA +
Preference number: 3 (lower is better)
Translates to: FCSVLAYWSSGH*AQLSTSLMLAI
Trigger: TATTGCCAACATCAAGGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGTGTGTCTGTGAATGTTaGAATCTCCCCCTCTTTTTC +
Preference number: 3 (lower is better)
Translates to: LSSMNFYQQLTETDANNKCVCEC*NLPLFF
Trigger: GAAAAAGAGGGGGAGATTCAAACATTCACAGACACA...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCTGCACATACAATAACTaGGATGAGAGTACAAATGAG +
Preference number: 3 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFCTYNN*DESTNE
Trigger: CTCATTTGTACTCTCATCCAAGTTATTGTATGTGCA...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp AATGTGTATGTGTGTGTGCTTGTGTCTGTGAATGTTTaGATCTCCCCCTCTTTTTCTTCTCTAGACACTGGA +
Preference number: 3 (lower is better)
Translates to: NVYVCVLVSVNV*ISPSFSSLDTG
Trigger: TCCAGTGTCTAGAGAAGAAAAAGAGGGGGAGATTCAAACATTCACAGACACAAGCACACACACATACACATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR GCA 72 bp GCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTaGAAAGAGAGGCCCTTTGGATTTGCAAACTTTATA +
Preference number: 3 (lower is better)
Translates to: AYVSKDGLVSHH*KERPFGFANFI
Trigger: TATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR GCA 72 bp AATATCAACAGAAGGAGGAGAAGCTCCCAGCCAAACTaGACATACAATAACTTGGATGAGAGTACAAATGAG +
Preference number: 3 (lower is better)
Translates to: NINRRRRSSQPN*TYNNLDESTNE
Trigger: CTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACATCTGTCAAAGGAAGATaGTTTGAGAACATTGTGGAA +
Preference number: 3 (lower is better)
Translates to: HHCKERPFGFANFICPSTSVKGR*FENIVE
Trigger: TTCCACAATGTTCTCAAACAATCTTCCTTTGACAGA...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAAAAGTGGTTGGGACATaGCATTTTGCACCCATTAGC +
Preference number: 3 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLKVVGT*HFAPIS
Trigger: GCTAATGGGTGCAAAATGCAATGTCCCAACCACTTT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGTGCACATACAATAACTaGGATGAGAGTACAAATGAG +
Preference number: 3 (lower is better)
Translates to: PSQPSLQREALWICKLYMCTYNN*DESTNE
Trigger: CTCATTTGTACTCTCATCCAAGTTATTGTATGTGCA...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp GAGAGTCCTGTTATTGGCCTTAACAATTGGAGTATTGTGGTGCTTCACAATGACTCTGTCAAAGGAAGATaGTTTGAGAACATTGTGGAA +
Preference number: 3 (lower is better)
Translates to: ESPVIGLNNWSIVVLHNDSVKGR*FENIVE
Trigger: TTCCACAATGTTCTCAAACAATCTTCCTTTGACAGA...GTCATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGACTCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGTTGGAACCTGTCTGTTaGAACTTTCTTATATCTACC +
Preference number: 3 (lower is better)
Translates to: LSSMNFYQQLTETDANNKLEPVC*NFLIST
Trigger: GGTAGATATAAGAAAGTTCAAACAGACAGGTTCCAA...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGTACTTCATCATTCTTaGAGAGGCTGTGATTTTGAA +
Preference number: 3 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITVLHHS*RGCDFE
Trigger: TTCAAAATCACAGCCTCTCAAAGAATGATGAAGTAC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp GATGCCCCTGAAACTAGAAAGTACTTCATCATTCTTTaGGAGGCTGTGATTTTGAATGCCAGAACTACAACA +
Preference number: 3 (lower is better)
Translates to: DAPETRKYFIIL*EAVILNARTTT
Trigger: TGTTGTAGTTCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAGTACTTTCTAGTTTCAGGGGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp ATAAGGAAAGTGCCATCCCCAGTGGTTCTTCATAGTTaGGAAATACAACAGCTTTATGAATGCAGTGATTCT +
Preference number: 3 (lower is better)
Translates to: IRKVPSPVVLHS*EIQQLYECSDS
Trigger: AGAATCACTGCATTCATAAAGCTGTTGTATTTCTCAACTATGAAGAACCACTGGGGATGGCACTTTCCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
3UTR-3UTR CAA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATCTGTCAAAGGAAGATaGTTTGAGAACATTGTGGAA +
Preference number: 3 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLSVKGR*FENIVE
Trigger: TTCCACAATGTTCTCAAACAATCTTCCTTTGACAGA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR-3UTR CAA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATTGGAACCTGTCTGTTaGAACTTTCTTATATCTACC +
Preference number: 3 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLLEPVC*NFLIST
Trigger: GGTAGATATAAGAAAGTTCAAACAGACAGGTTCCAA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CCA 72 bp CCTGAGCAATGTAACACAGAACTAAAAAGATGTACATaGTATGTACTGTCTTATAAGTGCACATTCACCAAA +
Preference number: 3 (lower is better)
Translates to: PEQCNTELKRCT*YVLSYKCTFTK
Trigger: TTTGGTGAATGTGCACTTATAAGACAGTACATACCATGTACATCTTTTTAGTTCTGTGTTACATTGCTCAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR TCA 72 bp ACTCAATCATTTTTACTCAACAAGCTGTGTGTTCCATaGCAATTTCACAAGTGTGTCTTTGATGACATACAT +
Preference number: 3 (lower is better)
Translates to: TQSFLLNKLCVP*QFHKCVFDDIH
Trigger: ATGTATGTCATCAAAGACACACTTGTGAAATTGTCATGGAACACACAGCTTGTTGAGTAAAAATGATTGAGT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTGCACCCCAGCATCCCTaGACTGGAAGCCAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTAPQHP*TGSQSG
Trigger: TCCACTTTGGCTTCCAGTGCAGGGATGCTGGGGTGC...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATCCAGCATCCCTGCACTaGAAGCCAAAGTGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHPASLH*KPKWRR
Trigger: TCTTCTCCACTTTGGCTTCCAGTGCAGGGATGCTGG...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATGGGCATGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 4 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHGHGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCATGCCC...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCCGAGAATCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 4 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDARESQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGATTCTCG...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCACACTGGAAGCCAAAGTaGAGAAGATCTCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAHWKPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCACTTTGGCTTCCAGTG...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACACCAGCATCCCTGCACTaGAAGCCAAAGTGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: HHCKERPFGFANFICPSTPASLH*KPKWRR
Trigger: TCTTCTCCACTTTGGCTTCCAGTGCAGGGATGCTGG...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGGGCATGGTTTGCAATaGAAACAGCATGCTGCCATT +
Preference number: 4 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAGHGLQ*KQHAAI
Trigger: AATGGCAGCATGCTGTTTTCATTGCAAACCATGCCC...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCGTTGTAGAATGCAGGTaGCTGAGTTTGGATGGCCAA +
Preference number: 4 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFVVECR*LSLDGQ
Trigger: TTGGCCATCCAAACTCAGTCACCTGCATTCTACAAC...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCACTGGAAGCCAAAGTaGAGAAGATCTCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMHWKPK*RRSPQP
Trigger: TGGCTGTGGAGATCTTCTCCACTTTGGCTTCCAGTG...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTAGTCATCTGGGTATTTaGCAGAGTTCAATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAASHLGI*QSSMSA
Trigger: TGCAGACATTGAACTCTGTCAAATACCCAGATGACT...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCAGTTTGGATGGCCAATaGAGAGCAAGGGACAGAGGA +
Preference number: 4 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITSLDGQ*RARDRG
Trigger: TCCTCTGTCCCTTGCTCTTCATTGGCCATCCAAACT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTACAGGATTAGTGAACTaGATCTTTCTCAGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAATGLVN*IFLREG
Trigger: TCCCTCTCTGAGAAAGATGCAGTTCACTAATCCTGT...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCATGGTCCTCTGGACACTaGGCACAATTATCCACATTT +
Preference number: 4 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAWSSGH*AQLSTF
Trigger: AAATGTGGATAATTGTGCCCAGTGTCCAGAGGACCA...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTTTGACTGAACCCTTGTaGCAAACAATGATGATGTGG +
Preference number: 4 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAALTEPL*QTMMMW
Trigger: CCACATCATCATTGTTTGCCACAAGGGTTCAGTCAA...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTATGGTCCTCTGGACACTaGGCACAATTATCCACATCT +
Preference number: 4 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLWSSGH*AQLSTS
Trigger: AGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCA...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCCAAAAGCACCTGGGATaGATAAAATCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFQKHLG*IKSATR
Trigger: TCTTGTGGCTGATTTTATTCATCCCAGGTGCTTTTG...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCACAAAAGCACCTGGGATaGATAAAATCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAQKHLG*IKSATR
Trigger: TCTTGTGGCTGATTTTATTCATCCCAGGTGCTTTTG...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp GAGCATCAATATCAACAGAAGGAGGAGAAGCTCCCAGCCAAACTGCACATACAACAAAAGCACCTGGGATaGATAAAATCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: EHQYQQKEEKLPAKLHIQQKHLG*IKSATR
Trigger: TCTTGTGGCTGATTTTATTCATCCCAGGTGCTTTTG...TTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATTGATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGGTTGTAGAATGCAGGTaGCTGAGTTTGGATGGCCAA +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKVVECR*LSLDGQ
Trigger: TTGGCCATCCAAACTCAGTCACCTGCATTCTACAAC...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAACGAGCATGGAAAGATaGTTTCACCCTGGTCATTTC +
Preference number: 4 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLTSMER*FHPGHF
Trigger: GAAATGACCAGGGTGAAATCATCTTTCCATGCTCGT...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGACTGCACACAGAAGTTaGCACCTGTGTACTTCCTTT +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMTAHRS*HLCTSF
Trigger: AAAGGAAGTACACAGGTGCCAACTTCTGTGTGCAGT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTTGGTCCTCTGGACACTaGGCACAATTATCCACATTT +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTWSSGH*AQLSTF
Trigger: AAATGTGGATAATTGTGCCCAGTGTCCAGAGGACCA...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCAACCAAAATGAATTATaGAGGATACCAGGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFNQNEL*RIPGQV
Trigger: CACTTGCCCTGGTATCCTTCATAATTCATTTTGGTT...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCACGAGCATGGAAAGATaGTTTCACCCTGGTCATTTC +
Preference number: 4 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITTSMER*FHPGHF
Trigger: GAAATGACCAGGGTGAAATCATCTTTCCATGCTCGT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCCACAGGTTGTTGTACTaGATGAATCACAAAGGTACA +
Preference number: 4 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFHRLLY*MNHKGT
Trigger: TGTACCTTTGTGATTCATGCAGTACAACAACCTGTG...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp GAGCATCAATATCAACAGAAGGAGGAGAAGCTCCCAGCCAAACTGCACATACAACACAGGTTGTTGTACTaGATGAATCACAAAGGTACA +
Preference number: 4 (lower is better)
Translates to: EHQYQQKEEKLPAKLHIQHRLLY*MNHKGT
Trigger: TGTACCTTTGTGATTCATGCAGTACAACAACCTGTG...TTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTCTGTTGATATTGATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGACAGGATTAGTGAACTaGATCTTTCTCAGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMTGLVN*IFLREG
Trigger: TCCCTCTCTGAGAAAGATGCAGTTCACTAATCCTGT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTATGAAAACAGCATGCTaGCATTCCATCCATCCCAAA +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTMKTAC*HSIHPK
Trigger: TTTGGGATGGATGGAATGGCAGCATGCTGTTTTCAT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGTTTCTGGGCATGGTTTaGAATGAAAACAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMFLGMV*NENSML
Trigger: CAGCATGCTGTTTTCATTGCAAACCATGCCCAGAAA...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATTACCAGATAGTCATCTaGGTATTTGACAGAGTTCAA +
Preference number: 4 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHYQIVI*VFDRVQ
Trigger: TTGAACTCTGTCAAATACCCAGATGACTATCTGGTA...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: CSCRQEPSIAVLHEFLPAIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...TGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCTACCTGTTGACCATTTaGAAGATAGGGACTAAACAT +
Preference number: 4 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDAYLLTI*KIGTKH
Trigger: ATGTTTAGTCCCTATCTTCCAAATGGTCAACAGGTA...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTTACCTGTTGACCATTTaGAAGATAGGGACTAAACAT +
Preference number: 4 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAAYLLTI*KIGTKH
Trigger: ATGTTTAGTCCCTATCTTCCAAATGGTCAACAGGTA...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCACTGCACACAGAAGTTaGCACCTGTGTACTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITTAHRS*HLCTSF
Trigger: AAAGGAAGTACACAGGTGCCAACTTCTGTGTGCAGT...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTAAGTGCCATCCCCAGTaGTTCTTCATAGTTGAGAAA +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTKCHPQ*FFIVEK
Trigger: TTTCTCAACTATGAAGAACCACTGGGGATGGCACTT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGAAGTGCCATCCCCAGTaGTTCTTCATAGTTGAGAAA +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMKCHPQ*FFIVEK
Trigger: TTTCTCAACTATGAAGAACCACTGGGGATGGCACTT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTTTGACTGAACCCTTGTaGCAAACAATGATGATGTGG +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTLTEPL*QTMMMW
Trigger: CCACATCATCATTGTTTGCCACAAGGGTTCAGTCAA...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAAACCAAAATGAATTATaGAGGATACCAGGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLNQNEL*RIPGQV
Trigger: CACTTGCCCTGGTATCCTTCATAATTCATTTTGGTT...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGAACCAAAATGAATTATaGAGGATACCAGGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMNQNEL*RIPGQV
Trigger: CACTTGCCCTGGTATCCTTCATAATTCATTTTGGTT...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTACGAGAATCACAGTTGTaGATGCAGAGAAGCACAAGG +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLRESQL*MQRSTR
Trigger: CCTTGTGCTTCTCTGCATTCACAACTGTGATTCTCG...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGTGGCCATGTTCAGATTaGGCATCAATATCAACAGAA +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMWPCSD*ASISTE
Trigger: TTCTGTTGATATTGATGCTCAATCTGAACATGGCCA...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAGTACATCCTGTTCCCTaGTTTCTATCCTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLVHPVP*FLSLFS
Trigger: TGAAAACAAGGATAGAAACCAGGGAACAGGATGTAC...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp GCTCCCAAAGGACAGGAGAGCCAAGTATCCCAGAATAGAGTAAAATGCATTGACCTTTCCCATTGTCCTTaGGCAGATTATCAAACTTTT +
Preference number: 4 (lower is better)
Translates to: APKGQESQVSQNRVKCIDLSHCP*ADYQTF
Trigger: AAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAG...GTCAATGCATTTTACTCTATTCTGGGATACTTGGCTCTCCTGTCCTTTGGGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCGCACATACAATAACTTaGATGAGAGTACAAATGAGA +
Preference number: 4 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDAAHTIT*MRVQMR
Trigger: TCTCATTTGTACTCTCATCCAAGTTATTGTATGTGC...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
3UTR CAA 72 bp TTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATaGGTCCTCTGGACACTGGGCACAATTATCCACATC +
Preference number: 4 (lower is better)
Translates to: FMNAVILFCVSI*VLWTLGTIIHI
Trigger: GATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
CDS-3UTR TCA 90 bp GAGAGTCCTGTTATTGGCCTTAACAATTGGAGTATTGTGGTGCTTCACAATGACAACCAAAATGAATTATaGAGGATACCAGGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: ESPVIGLNNWSIVVLHNDNQNEL*RIPGQV
Trigger: CACTTGCCCTGGTATCCTTCATAATTCATTTTGGTT...GTCATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGACTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp AGCTCCCAGCCAAACTGCACATACAATAACTTGGATGAGAGTACAAATGAGAATAGTCATCTGGGTATTTaGCAGAGTTCAATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: SSQPNCTYNNLDESTNENSHLGI*QSSMSA
Trigger: TGCAGACATTGAACTCTGTCAAATACCCAGATGACT...ATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTATACAACTCCAAATGTaGTTTGTTGTAGAATGCAGG +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTIQLQM*FVVECR
Trigger: CCTGCATTCTACAACAAATCACATTTGGAGTTGTAT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGGTTTGTAAGGGCCATTaGACATTTGGTGTATTCTTT +
Preference number: 4 (lower is better)
Translates to: PSQPSLQREALWICKLYMVCKGH*TFGVFF
Trigger: AAAGAATACACCAAATGTGCAATGGCCCTTACAAAC...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTAGGCTGTGATTTTGAATaGCAGAACTACAACAATTGT +
Preference number: 4 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLGCDFE*QNYNNC
Trigger: ACAATTGTTGTAGTTCTGGCATTCAAAATCACAGCC...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTTTCATTTTCTGGGCATaGTTTGCAATGAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTFIFWA*FAMKTA
Trigger: TGCTGTTTTCATTGCAAACCATGCCCAGAAAATGAA...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGATTGGCCTTAACAATTaGAGTATTGTGGTGCTTCAC +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKIGLNN*SIVVLH
Trigger: GTGAAGCACCACAATACTCCAATTGTTAAGGCCAAT...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTACAAAAGCACCTGGGATaGATAAAATCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLQKHLG*IKSATR
Trigger: TCTTGTGGCTGATTTTATTCATCCCAGGTGCTTTTG...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAAGTCATCTGGGTATTTaGCAGAGTTCAATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLSHLGI*QSSMSA
Trigger: TGCAGACATTGAACTCTGTCAAATACCCAGATGACT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp AGCTCCCAGCCAAACTGCACATACAATAACTTGGATGAGAGTACAAATGAGAATACTGAAGCAAGTAGATaGAGAAATCCACATCCAAAC +
Preference number: 4 (lower is better)
Translates to: SSQPNCTYNNLDESTNENTEASR*RNPHPN
Trigger: GTTTGGATGTGGATTTCTGCATCTACTTGCTTCAGT...ATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
CDS-3UTR CCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGCTTTCCCATTGTCCTTaGGCAGATTATCAAACTTTT +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKLSHCP*ADYQTF
Trigger: AAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAG...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGTACCTGTTGACCATTTaGAAGATAGGGACTAAACAT +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKYLLTI*KIGTKH
Trigger: ATGTTTAGTCCCTATCTTCCAAATGGTCAACAGGTA...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGTTCATTTTCTGGGCATaGTTTGCAATGAAAACAGCA +
Preference number: 4 (lower is better)
Translates to: LSSMNFYQQLTETDANNKFIFWA*FAMKTA
Trigger: TGCTGTTTTCATTGCAAACCATGCCCAGAAAATGAA...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACAGCACATACAATAACTTaGATGAGAGTACAAATGAGA +
Preference number: 4 (lower is better)
Translates to: HHCKERPFGFANFICPSTAHTIT*MRVQMR
Trigger: TCTCATTTGTACTCTCATCCAAGTTATTGTATGTGC...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTAAGATGATTTCACCCTaGTCATTTCAACAGAATTTC +
Preference number: 4 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTKMISP*SFQQNF
Trigger: GAAATTCTGTTGAAATGACCAGGGTGAAATCATCTT...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTACACAGGTTGTTGTACTaGATGAATCACAAAGGTACA +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLHRLLY*MNHKGT
Trigger: TGTACCTTTGTGATTCATGCAGTACAACAACCTGTG...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp CTTCATCATTCTTTGAGAGGCTGTGATTTTGAATGCCAGAACTACAACAATTGTACAGGATTAGTGAACTaGATCTTTCTCAGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: LHHSLRGCDFECQNYNNCTGLVN*IFLREG
Trigger: TCCCTCTCTGAGAAAGATGCAGTTCACTAATCCTGT...ACAATTGTTGTAGTTCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp CTGTCAAAGGAAGATTGTTTGAGAACATTGTGGAAAATTAGAGGATCAATGGGAATGAAAACAGCATGCTaGCATTCCATCCATCCCAAA +
Preference number: 4 (lower is better)
Translates to: LSKEDCLRTLWKIRGSMGMKTAC*HSIHPK
Trigger: TTTGGGATGGATGGAATGGCAGCATGCTGTTTTCAT...TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR GCA 90 bp CTGTCAAAGGAAGATTGTTTGAGAACATTGTGGAAAATTAGAGGATCAATGGGATTTCTGGGCATGGTTTaGAATGAAAACAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: LSKEDCLRTLWKIRGSMGFLGMV*NENSML
Trigger: CAGCATGCTGTTTTCATTGCAAACCATGCCCAGAAA...TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTGTACATCCTGTTCCCTaGTTTCTATCCTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: ISEDMVLLGNILRGNSESVHPVP*FLSLFS
Trigger: TGAAAACAAGGATAGAAACCAGGGAACAGGATGTAC...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CAA 72 bp CTCATATGTAGATATGTAAAGATTTCTGGGTGTGTTTaGGGGCTTGTTCCTTCCACCAATTGTGTGTATATC +
Preference number: 4 (lower is better)
Translates to: LICRYVKISGCV*GLVPSTNCVYI
Trigger: GATATACACACAATTGGTGGAAGGAACAAGCCCCAAAACACACCCAGAAATCTTTACATATCTACATATGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTGGAACTGCTCAGAAATaGTGTTATTCAGGATTGTAT +
Preference number: 4 (lower is better)
Translates to: ISEDMVLLGNILRGNSESGTAQK*CYSGLY
Trigger: ATACAATCCTGAATAACATCATTTCTGAGCAGTTCC...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR TCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAAGTCATCTGGGTATTTaGCAGAGTTCAATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLSHLGI*QSSMSA
Trigger: TGCAGACATTGAACTCTGTCAAATACCCAGATGACT...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR GCA 90 bp CTTCATCATTCTTTGAGAGGCTGTGATTTTGAATGCCAGAACTACAACAATTGTCACAGGTTGTTGTACTaGATGAATCACAAAGGTACA +
Preference number: 4 (lower is better)
Translates to: LHHSLRGCDFECQNYNNCHRLLY*MNHKGT
Trigger: TGTACCTTTGTGATTCATGCAGTACAACAACCTGTG...ACAATTGTTGTAGTTCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CTTCATCATTCTTTGAGAGGCTGTGATTTTGAATGCCAGAACTACAACAATTGTGTACATCCTGTTCCCTaGTTTCTATCCTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: LHHSLRGCDFECQNYNNCVHPVP*FLSLFS
Trigger: TGAAAACAAGGATAGAAACCAGGGAACAGGATGTAC...ACAATTGTTGTAGTTCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTCTTTCCCATTGTCCTTaGGCAGATTATCAAACTTTT +
Preference number: 4 (lower is better)
Translates to: ISEDMVLLGNILRGNSESLSHCP*ADYQTF
Trigger: AAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAG...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATACCTGTTGACCATTTaGAAGATAGGGACTAAACAT +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLYLLTI*KIGTKH
Trigger: ATGTTTAGTCCCTATCTTCCAAATGGTCAACAGGTA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAAAGTGCCATCCCCAGTaGTTCTTCATAGTTGAGAAA +
Preference number: 4 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLKCHPQ*FFIVEK
Trigger: TTTCTCAACTATGAAGAACCACTGGGGATGGCACTT...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234296.2
3UTR CAA 72 bp ATAAGTGATGGGAGAAAGAATAAAGTGGTTGGGACATaGCATTTTGCACCCATTAGCTATGTGTATGTATGT +
Preference number: 4 (lower is better)
Translates to: ISDGRKNKVVGT*HFAPISYVYVC
Trigger: ACATACATACACATAGCTAATGGGTGCAAAATGCAATGTCCCAACCACTTTATTCTTTCTCCCATCACTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAGTACATCCTGTTCCCTaGTTTCTATCCTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLVHPVP*FLSLFS
Trigger: TGAAAACAAGGATAGAAACCAGGGAACAGGATGTAC...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAATTCCAATGAGTGATTaGATGAGCAGTTCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLIPMSD*MSSSSV
Trigger: CACTGAAGAACTGCTCATCCAATCACTCATTGGAAT...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp CTGTCAAAGGAAGATTGTTTGAGAACATTGTGGAAAATTAGAGGATCAATGGGACTTTCCCATTGTCCTTaGGCAGATTATCAAACTTTT +
Preference number: 4 (lower is better)
Translates to: LSKEDCLRTLWKIRGSMGLSHCP*ADYQTF
Trigger: AAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAG...TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CCA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTAATTGGCCTTAACAATTaGAGTATTGTGGTGCTTCAC +
Preference number: 4 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLIGLNN*SIVVLH
Trigger: GTGAAGCACCACAATACTCCAATTGTTAAGGCCAAT...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CCA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTAAAGATGATTTCACCCTaGTCATTTCAACAGAATTTC +
Preference number: 4 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLKMISP*SFQQNF
Trigger: GAAATTCTGTTGAAATGACCAGGGTGAAATCATCTT...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
3UTR CAA 72 bp GGATTCTATTATCTCTTTCTGTCAAAGGAAGATTGTTaGAGAACATTGTGGAAAATTAGAGGATCAATGGGA +
Preference number: 4 (lower is better)
Translates to: GFYYLFLSKEDC*RTLWKIRGSMG
Trigger: TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAGAAAGAGATAATAGAATCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
3UTR CAA 72 bp AGCTGTGTGTTCCATGACAATTTCACAAGTGTGTCTTaGATGACATACATAAAATTGAGAGTTATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: SCVFHDNFTSVS*MTYIKLRVICR
Trigger: TCTACAGATAACTCTCAATTTTATGTATGTCATCAAAGACACACTTGTGAAATTGTCATGGAACACACAGCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ACTTGGGTTCTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCCACTGCACACAGAAGTaGGCACCTGTGTACTTCCTT +
Preference number: 5 (lower is better)
Translates to: TWVLVHTQAPSTDTIIDAHCTQK*APVYFL
Trigger: AAGGAAGTACACAGGTGCCAACTTCTGTGTGCAGTG...GGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAGAACCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp AGAAACAAAGATGCACCCCAGCATCCCTGCACTGGAAGCCAAAGTGGAGAAGATCCCTGGTTTCTATCCTaGTTTTCATTCCGCTTCATT +
Preference number: 5 (lower is better)
Translates to: RNKDAPQHPCTGSQSGEDPWFLS*FSFRFI
Trigger: AATGAAGCGGAATGAAAACAAGGATAGAAACCAGGG...ATCTTCTCCACTTTGGCTTCCAGTGCAGGGATGCTGGGGTGCATCTTTGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATCAAATAGGAGAGAAATaGGATACCTTGATCACTGTC +
Preference number: 5 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHQIGEK*DTLITV
Trigger: GACAGTGATCAAGGTATCCAATTTCTCTCCTATTTG...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp GGAGTATTGTGGTGCTTCACAATGACCCCGAGAATCACAGTTGTGAATGCAGAGCAAATAGGAGAGAAATaGGATACCTTGATCACTGTC +
Preference number: 5 (lower is better)
Translates to: GVLWCFTMTPRITVVNAEQIGEK*DTLITV
Trigger: GACAGTGATCAAGGTATCCAATTTCTCTCCTATTTG...CTCTGCATTCACAACTGTGATTCTCGGGGTCATTGTGAAGCACCACAATACTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
CDS-3UTR CAA 90 bp ACACTGGATATCATAGCCAGTAGCCTCTGTGCATTTCTGGACCAACCAACCCATCTGCAGTTTGTCTCTTaGGTTCATATTCACTATGTC +
Preference number: 5 (lower is better)
Translates to: TLDIIASSLCAFLDQPTHLQFVS*VHIHYV
Trigger: GACATAGTGAATATGAACCAAAGAGACAAACTGCAG...ATGGGTTGGTTGGTCCAGAAATGCACAGAGGCTACTGGCTATGATATCCAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGGCATTGACTGAACCCTaGTGGCAAACAATGATGATG +
Preference number: 5 (lower is better)
Translates to: PSQPSLQREALWICKLYMALTEP*WQTMMM
Trigger: CATCATCATTGTTTGCCACAAGGGTTCAGTCAATGC...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACATCCAAACAATAGGTaGAGCTTAGGGAATCCTGTG +
Preference number: 5 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLHPNNR*SLGNPV
Trigger: CACAGGATTCCCTAAGCTCAACCTATTGTTTGGATG...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
CDS-3UTR CAA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTTTTTTCCACAGGTTGTaGTACTGCATGAATCACAAA +
Preference number: 5 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAAFFHRL*YCMNHK
Trigger: TTTGTGATTCATGCAGTACAACAACCTGTGGAAAAA...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CCATGTTGTTCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACTCTTTTTCCACAGGTaGTTGTACTGCATGAATCAC +
Preference number: 5 (lower is better)
Translates to: PCCSCRQEPSIAVLHEFLLFFHR*LYCMNH
Trigger: GTGATTCATGCAGTACAACAACCTGTGGAAAAAGAG...TAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGAACAACATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CCTAGTCAGCCATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCTCTTTTTCCACAGGTaGTTGTACTGCATGAATCAC +
Preference number: 5 (lower is better)
Translates to: PSQPSLQREALWICKLYMLFFHR*LYCMNH
Trigger: GTGATTCATGCAGTACAACAACCTGTGGAAAAAGAG...CATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATGGCTGACTAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp TCTTGTAGACAGGAGCCTAGCATAGCTGTCCTCCATGAATTTCTACCAGCAGCTTGCACATACAATAACTaGGATGAGAGTACAAATGAG +
Preference number: 5 (lower is better)
Translates to: SCRQEPSIAVLHEFLPAACTYNN*DESTNE
Trigger: CTCATTTGTACTCTCATCCAAGTTATTGTATGTGCA...AGCTGCTGGTAGAAATTCATGGAGGACAGCTATGCTAGGCTCCTGTCTACAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCGCATTGACTGAACCCTaGTGGCAAACAATGATGATG +
Preference number: 5 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITALTEP*WQTMMM
Trigger: CATCATCATTGTTTGCCACAAGGGTTCAGTCAATGC...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp TCCCAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCCTCTTTTTCCACAGGTaGTTGTACTGCATGAATCAC +
Preference number: 5 (lower is better)
Translates to: SQSHIWNVRVFLNSIWITLFFHR*LYCMNH
Trigger: GTGATTCATGCAGTACAACAACCTGTGGAAAAAGAG...GGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTAGTCCACACTCAGGCACCAAGCACTGACACTATTATTGATGCCATGTTGTTCGATTCCCAGACACAATaGTGTGCTGAGAATTTAAAT +
Preference number: 5 (lower is better)
Translates to: LVHTQAPSTDTIIDAMLFDSQTQ*CAENLN
Trigger: ATTTAAATTCTCAGCACACAATTGTGTCTGGGAATC...GAACAACATGGCATCAATAATAGTGTCAGTGCTTGGTGCCTGAGTGTGGACTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp TTGAAGGAGCAGAAGCAGATGACTACCACCATAGGAAGCAAAACATTGCCAACTTATAAAGTGTCACAGTaGTTGCCCAATTCAGGTTTG +
Preference number: 5 (lower is better)
Translates to: LKEQKQMTTTIGSKTLPTYKVSQ*LPNSGL
Trigger: CAAACCTGAATTGGGCAACAACTGTGACACTTTATA...AGTTGGCAATGTTTTGCTTCCTATGGTGGTAGTCATCTGCTTCTGCTCCTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACATATAAAGTGTCACAGTaGTTGCCCAATTCAGGTTTG +
Preference number: 5 (lower is better)
Translates to: HHCKERPFGFANFICPSTYKVSQ*LPNSGL
Trigger: CAAACCTGAATTGGGCAACAACTGTGACACTTTATA...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACACAAATAGGAGAGAAATaGGATACCTTGATCACTGTC +
Preference number: 5 (lower is better)
Translates to: HHCKERPFGFANFICPSTQIGEK*DTLITV
Trigger: GACAGTGATCAAGGTATCCAATTTCTCTCCTATTTG...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CCA 90 bp TTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATTGGTCCTCTaGACACTGGGCACAATTATCCACATCTGTGTACTTCCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: FMNAVILFCVSILVL*TLGTIIHICVLPFV
Trigger: GACAAAAGGAAGTACACAGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp AGCTCCCAGCCAAACTGCACATACAATAACTTGGATGAGAGTACAAATGAGAATCTCTTTTTCCACAGGTaGTTGTACTGCATGAATCAC +
Preference number: 5 (lower is better)
Translates to: SSQPNCTYNNLDESTNENLFFHR*LYCMNH
Trigger: GTGATTCATGCAGTACAACAACCTGTGGAAAAAGAG...ATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGCAAATAGGAGAGAAATaGGATACCTTGATCACTGTC +
Preference number: 5 (lower is better)
Translates to: LSSMNFYQQLTETDANNKQIGEK*DTLITV
Trigger: GACAGTGATCAAGGTATCCAATTTCTCTCCTATTTG...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGCTGCAGTTTGTCTCTTaGGTTCATATTCACTATGTC +
Preference number: 5 (lower is better)
Translates to: LSSMNFYQQLTETDANNKLQFVS*VHIHYV
Trigger: GACATAGTGAATATGAACCAAAGAGACAAACTGCAG...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTACACTGCACACAGAAGTaGGCACCTGTGTACTTCCTT +
Preference number: 5 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLHCTQK*APVYFL
Trigger: AAGGAAGTACACAGGTGCCAACTTCTGTGTGCAGTG...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp CATCACTGCAAAGAGAGGCCCTTTGGATTTGCAAACTTTATATGCCCCAGTACAGTACTTCATCATTCTTaGAGAGGCTGTGATTTTGAA +
Preference number: 5 (lower is better)
Translates to: HHCKERPFGFANFICPSTVLHHS*RGCDFE
Trigger: TTCAAAATCACAGCCTCTCAAAGAATGATGAAGTAC...TGTACTGGGGCATATAAAGTTTGCAAATCCAAAGGGCCTCTCTTTGCAGTGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS CCA 90 bp CTCACAGTTAAAGTGCATCCATTCCAGCTCTACCAGATAGTCATCTaGGTATTTGACAGAGTTCAATGTCTGCACAAAATTTTTGAAACC +
Preference number: 5 (lower is better)
Translates to: LTVKVHPFQLYQIVI*VFDRVQCLHKIFET
Trigger: GGTTTCAAAAATTTTGTGCAGACATTGAACTCTGTCAAATACCCAGATGACTATCTGGTAGAGCTGGAATGGATGCACTTTAACTGTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CCA 90 bp AAATTTTCTAGATCCAGGACCACAATCAGCACTGCACACAGAAGTTaGCACCTGTGTACTTCCTTTTGTCCACTTTATTATAACTTCAGA +
Preference number: 5 (lower is better)
Translates to: KFSRSRTTISTAHRS*HLCTSFCPLYYNFR
Trigger: TCTGAAGTTATAATAAAGTGGACAAAAGGAAGTACACAGGTGCCAACTTCTGTGTGCAGTGCTGATTGTGGTCCTGGATCTAGAAAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTCCCTGGTTTCTATCCTaGTTTTCATTCCGCTTCATT +
Preference number: 5 (lower is better)
Translates to: ISEDMVLLGNILRGNSESPWFLS*FSFRFI
Trigger: AATGAAGCGGAATGAAAACAAGGATAGAAACCAGGG...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTGTCCTCCATGAATTTCTACCAGCAGCTGACTGAGACAGATGCAAATAATAAGGATTCCCAGACACAATaGTGTGCTGAGAATTTAAAT +
Preference number: 5 (lower is better)
Translates to: LSSMNFYQQLTETDANNKDSQTQ*CAENLN
Trigger: ATTTAAATTCTCAGCACACAATTGTGTCTGGGAATC...CTTATTATTTGCATCTGTCTCAGTCAGCTGCTGGTAGAAATTCATGGAGGACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTTATAAAGTGTCACAGTaGTTGCCCAATTCAGGTTTG +
Preference number: 5 (lower is better)
Translates to: ISEDMVLLGNILRGNSESYKVSQ*LPNSGL
Trigger: CAAACCTGAATTGGGCAACAACTGTGACACTTTATA...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATATAAAGTGTCACAGTaGTTGCCCAATTCAGGTTTG +
Preference number: 5 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLYKVSQ*LPNSGL
Trigger: CAAACCTGAATTGGGCAACAACTGTGACACTTTATA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ATATCAGAAGACATGGTATTGCTAGGCAATATCCTTAGAGGAAACAGTGAGAGTCTGCAGTTTGTCTCTTaGGTTCATATTCACTATGTC +
Preference number: 5 (lower is better)
Translates to: ISEDMVLLGNILRGNSESLQFVS*VHIHYV
Trigger: GACATAGTGAATATGAACCAAAGAGACAAACTGCAG...ACTCTCACTGTTTCCTCTAAGGATATTGCCTAGCAATACCATGTCTTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTACCCTGGTTTCTATCCTaGTTTTCATTCCGCTTCATT +
Preference number: 5 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLPWFLS*FSFRFI
Trigger: AATGAAGCGGAATGAAAACAAGGATAGAAACCAGGG...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CAGTCTCACATCTGGAATGTGAGAGTCTTTCTGAACTCAATATGGATAACCTTATTTTTCCACAGGTTGTaGTACTGCATGAATCACAAA +
Preference number: 5 (lower is better)
Translates to: QSHIWNVRVFLNSIWITLFFHRL*YCMNHK
Trigger: TTTGTGATTCATGCAGTACAACAACCTGTGGAAAAA...TAAGGTTATCCATATTGAGTTCAGAAAGACTCTCACATTCCAGATGTGAGACTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTGTCAAAGGAAGATTGTTTGAGAACATTGTGGAAAATTAGAGGATCAATGGGAGATTCCCAGACACAATaGTGTGCTGAGAATTTAAAT +
Preference number: 5 (lower is better)
Translates to: LSKEDCLRTLWKIRGSMGDSQTQ*CAENLN
Trigger: ATTTAAATTCTCAGCACACAATTGTGTCTGGGAATC...TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS-3UTR CAA 90 bp CTGTCAAAGGAAGATTGTTTGAGAACATTGTGGAAAATTAGAGGATCAATGGGAGTACTTCATCATTCTTaGAGAGGCTGTGATTTTGAA +
Preference number: 5 (lower is better)
Translates to: LSKEDCLRTLWKIRGSMGVLHHS*RGCDFE
Trigger: TTCAAAATCACAGCCTCTCAAAGAATGATGAAGTAC...TCCCATTGATCCTCTAATTTTCCACAATGTTCTCAAACAATCTTCCTTTGACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS-3UTR CAA 90 bp ACATTGTGGAAAATTAGAGGATCAATGGGAATATCAGAAGACATGGTATTGCTATGCACATACAATAACTaGGATGAGAGTACAAATGAG +
Preference number: 5 (lower is better)
Translates to: TLWKIRGSMGISEDMVLLCTYNN*DESTNE
Trigger: CTCATTTGTACTCTCATCCAAGTTATTGTATGTGCA...TAGCAATACCATGTCTTCTGATATTCCCATTGATCCTCTAATTTTCCACAATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS TCA 72 bp TCTGAGATGACCAACCCTACCCAGTTCCAACCAAAATaGATTATGAAGGATACCAGGGCAAGTGCTAGAGAT +
Preference number: 6 (lower is better)
Translates to: SEMTNPTQFQPK*IMKDTRASARD
Trigger: ATCTCTAGCACTTGCCCTGGTATCCTTCATAATTCATTTTGGTTGGAACTGGGTAGGGTTGGTCATCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS GCA 72 bp TTCATATTCACTATGTCCCCAACAGGATTAGTGAACTaGATCTTTCTCAGAGAGGGATCCACCTTCTTGCAG +
Preference number: 6 (lower is better)
Translates to: FIFTMSPTGLVN*IFLREGSTFLQ
Trigger: CTGCAAGAAGGTGGATCCCTCTCTGAGAAAGATGCAGTTCACTAATCCTGTTGGGGACATAGTGAATATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CCA 72 bp GCAGTGATTCTGTTCTGTGTTAGCATATTGGTCCTCTaGACACTGGGCACAATTATCCACATCTGTGTACTT +
Preference number: 6 (lower is better)
Translates to: AVILFCVSILVL*TLGTIIHICVL
Trigger: AAGTACACAGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234296.2
CDS CCA 72 bp TTCTGTTCTGTGTTAGCATATTGGTCCTCTGGACACTaGGCACAATTATCCACATCTGTGTACTTCCTTTTG +
Preference number: 6 (lower is better)
Translates to: FCSVLAYWSSGH*AQLSTSVYFLL
Trigger: CAAAAGGAAGTACACAGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234296.2
CDS CAA 72 bp GCAAGTAGATGCAGAAATCCACATCCAAACAATAGGTaGAGCTTAGGGAATCCTGTGTACTTCCTTTTGTCC +
Preference number: 6 (lower is better)
Translates to: ASRCRNPHPNNR*SLGNPVYFLLS
Trigger: GGACAAAAGGAAGTACACAGGATTCCCTAAGCTCAACCTATTGTTTGGATGTGGATTTCTGCATCTACTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234223.2
CDS CAA 90 bp TACAACAGCTTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATaGGTCCTCTGGACACTGGGCACAATTATCCACATCTGTGTACTT +
Preference number: 6 (lower is better)
Translates to: YNSFMNAVILFCVSI*VLWTLGTIIHICVL
Trigger: AAGTACACAGATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAAGCTGTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234296.2
CDS CCA 72 bp AAAGTGCATCCATTCCAGCTCTACCAGATAGTCATCTaGGTATTTGACAGAGTTCAATGTCTGCACAAAATT +
Preference number: 6 (lower is better)
Translates to: KVHPFQLYQIVI*VFDRVQCLHKI
Trigger: AATTTTGTGCAGACATTGAACTCTGTCAAATACCCAGATGACTATCTGGTAGAGCTGGAATGGATGCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CAA 72 bp TTCTTTCCCATTGTCCTTGGGCAGATTATCAAACTTTaGAAAAGTAAACTGATGGAGTGCATGGGCAAAAGC +
Preference number: 6 (lower is better)
Translates to: FFPIVLGQIIKL*KSKLMECMGKS
Trigger: GCTTTTGCCCATGCACTCCATCAGTTTACTTTTCAAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CAA 72 bp TTTATGAATGCAGTGATTCTGTTCTGTGTTAGCATATaGGTCCTCTGGACACTGGGCACAATTATCCACATT +
Preference number: 6 (lower is better)
Translates to: FMNAVILFCVSI*VLWTLGTIIHI
Trigger: AATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS CAA 90 bp ATAATTGTGTTCTTTCCCATTGTCCTTGGGCAGATTATCAAACTTTaGAAAAGTAAACTGATGGAGTGCATGGGCAAAAGCATACACAGC +
Preference number: 6 (lower is better)
Translates to: IIVFFPIVLGQIIKL*KSKLMECMGKSIHS
Trigger: GCTGTGTATGCTTTTGCCCATGCACTCCATCAGTTTACTTTTCAAAAGTTTGATAATCTGCCCAAGGACAATGGGAAAGAACACAATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS GCA 72 bp ATGACTAAAATACTCTTTTTCCACAGGTTGTTGTACTaGATGAATCACAAAGGTACATCCTGTTCCCTGGTT +
Preference number: 6 (lower is better)
Translates to: MTKILFFHRLLY*MNHKGTSCSLV
Trigger: AACCAGGGAACAGGATGTACCTTTGTGATTCATGCAGTACAACAACCTGTGGAAAAAGAGTATTTTAGTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS GCA 72 bp CACAGTTGTTGCCCAATTCAGGTTTGTAAGGGCCATTaGACATTTGGTGTATTCTTTACACAAATAATTAGG +
Preference number: 6 (lower is better)
Translates to: HSCCPIQVCKGH*TFGVFFTQIIR
Trigger: CCTAATTATTTGTGTAAAGAATACACCAAATGTGCAATGGCCCTTACAAACCTGAATTGGGCAACAACTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CCA 72 bp TTCTGTTCTGTGTTAGCATATTGGTCCTCTGGACACTaGGCACAATTATCCACATTTGTCTCATTAGAAATT +
Preference number: 6 (lower is better)
Translates to: FCSVLAYWSSGH*AQLSTFVSLEI
Trigger: AATTTCTAATGAGACAAATGTGGATAATTGTGCCCAGTGTCCAGAGGACCAATATGCTAACACAGAACAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
CDS CAA 72 bp GTAGAAAATGTCATACTCTTCCTGCAGTTTGTCTCTTaGGTTCATATTCACTATGTCCCCAACAGGATTAGT +
Preference number: 6 (lower is better)
Translates to: VENVILFLQFVS*VHIHYVPNRIS
Trigger: ACTAATCCTGTTGGGGACATAGTGAATATGAACCAAAGAGACAAACTGCAGGAAGAGTATGACATTTTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CAA 90 bp ATTCCAAATGTAGAAAATGTCATACTCTTCCTGCAGTTTGTCTCTTaGGTTCATATTCACTATGTCCCCAACAGGATTAGTGAACTGCAT +
Preference number: 6 (lower is better)
Translates to: IPNVENVILFLQFVS*VHIHYVPNRISELH
Trigger: ATGCAGTTCACTAATCCTGTTGGGGACATAGTGAATATGAACCAAAGAGACAAACTGCAGGAAGAGTATGACATTTTCTACATTTGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092491.7
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS TCA 72 bp TTAGAGACATATTTGGCAAAAGATCAGGGTTCCTGTTaGTTTCATTTATGGAAAAAGCCAAAGCCAGAGCAT +
Preference number: 6 (lower is better)
Translates to: LETYLAKDQGSC*FHLWKKPKPEH
Trigger: ATGCTCTGGCTTTGGCTTTTTCCATAAATGAAATCAACAGGAACCCTGATCTTTTGCCAAATATGTCTCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CAA 72 bp ATTAGAGACATATTTGGCAAAAGATCAGGGTTCCTGTaGATTTCATTTATGGAAAAAGCCAAAGCCAGAGCA +
Preference number: 6 (lower is better)
Translates to: IRDIFGKRSGFL*ISFMEKAKARA
Trigger: TGCTCTGGCTTTGGCTTTTTCCATAAATGAAATCAACAGGAACCCTGATCTTTTGCCAAATATGTCTCTAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2
CDS CAA 72 bp CAATATATGACTAAAATACTCTTTTTCCACAGGTTGTaGTACTGCATGAATCACAAAGGTACATCCTGTTCC +
Preference number: 6 (lower is better)
Translates to: QYMTKILFFHRL*YCMNHKGTSCS
Trigger: GGAACAGGATGTACCTTTGTGATTCATGCAGTACAACAACCTGTGGAAAAAGAGTATTTTAGTCATATATTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092491.7
ENSMUST00000234027.2
ENSMUST00000234223.2
ENSMUST00000234296.2