Pregenerated sensors for VMN2R109 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090572Ensembl transcript IDs: ENSMUST00000167093.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGGAGTGTCTCTGTATTTCACAAAGACCCCAATTACAAAGGCTGTaGGTGCAGATAAGCACAAAGATATGTTGGCTAGTGTCACCCCCA | + |
|
Preference number: 5 (lower is better) Translates to: WECLCISQRPQLQRL*VQISTKICWLVSPP Trigger: TGGGGGTGACACTAGCCAACATATCTTTGTGCTTATCTGCACTCACAGCCTTTGTAATTGGGGTCTTTGTGAAATACAGAGACACTCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS GCA 90 bp | CAGAAAGCTCAAGGCTTTCTGGAAGCAGCGGTTCTTCTCTATACTTaGATAATGACTCTCTGGACACTTTATACACTGGTCCGCATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: QKAQGFLEAAVLLYT*IMTLWTLYTLVRIC Trigger: ACAGATGCGGACCAGTGTATAAAGTGTCCAGAGAGTCATTATGCAAGTATAGAGAAGAACCGCTGCTTCCAGAAAGCCTTGAGCTTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS TCA 72 bp | CTCACAGCTCTTACTGCACACAGCCTGAGGGATCTCTaGAAATCCTCCTGCCCATTGTATCATATGCTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: LTALTAHSLRDL*KSSCPLYHMLR Trigger: TCTGAGCATATGATACAATGGGCAGGAGGATTTTCAGAGATCCCTCAGGCTGTGTGCAGTAAGAGCTGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS CAA 90 bp | GTATCATATGCTCAGATAAGGACAACTGTTGGCCCTCGGGAGCATTaGCTGAGAAGGATCCTATTTTCACCTTTCGTCCAAGACCCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: VSYAQIRTTVGPREH*LRRILFSPFVQDPL Trigger: CAAAGGGTCTTGGACGAAAGGTGAAAATAGGATCCTTCTCAGCAAATGCTCCCGAGGGCCAACAGTTGTCCTTATCTGAGCATATGATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS CAA 90 bp | ACAGAAAGCTCAAGGCTTTCTGGAAGCAGCGGTTCTTCTCTATACTaGCATAATGACTCTCTGGACACTTTATACACTGGTCCGCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: TESSRLSGSSGSSLY*HNDSLDTLYTGPHL Trigger: CAGATGCGGACCAGTGTATAAAGTGTCCAGAGAGTCATTATGCAAGTATAGAGAAGAACCGCTGCTTCCAGAAAGCCTTGAGCTTTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS GCA 72 bp | CTGGTCCGCATCTGTCTCATTAGAAATTTCATTGTCTaGACAAGGAGTGCAATTGTAGCAGCAGATGGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: LVRICLIRNFIV*TRSAIVAADGL Trigger: AAGGCCATCTGCTGCTACAATTGCACTCCTTGTGCAGACAATGAAATTTCTAATGAGACAGATGCGGACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS GCA 72 bp | CAAGGCTTTCTGGAAGCAGCGGTTCTTCTCTATACTTaGATAATGACTCTCTGGACACTTTATACACTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: QGFLEAAVLLYT*IMTLWTLYTLV Trigger: GACCAGTGTATAAAGTGTCCAGAGAGTCATTATGCAAGTATAGAGAAGAACCGCTGCTTCCAGAAAGCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS CCA 72 bp | GGTAGAGCGAAGAATATTGACCACGGTCACTCAGGATaGGATCATAAGGTCCAAAAGAAAGCTGAGGAAATT | + |
|
Preference number: 6 (lower is better) Translates to: GRAKNIDHGHSG*DHKVQKKAEEI Trigger: AATTTCCTCAGCTTTCTTTTGGACCTTATGATCCCATCCTGAGTGACCGTGGTCAATATTCTTCGCTCTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS CCA 72 bp | GCAGCGGTTCTTCTCTATACTTGCATAATGACTCTCTaGACACTTTATACACTGGTCCGCATCTGTCTCATT | + |
|
Preference number: 6 (lower is better) Translates to: AAVLLYTCIMTL*TLYTLVRICLI Trigger: AATGAGACAGATGCGGACCAGTGTATAAAGTGTCCAGAGAGTCATTATGCAAGTATAGAGAAGAACCGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS TCA 72 bp | TCTGGGAGTATGAGACCAACCCAGGACCACCTAAAATaGACCATCAAAGATACAATGCCAAGTGGAATTAAT | + |
|
Preference number: 6 (lower is better) Translates to: SGSMRPTQDHLK*TIKDTMPSGIN Trigger: ATTAATTCCACTTGGCATTGTATCTTTGATGGTTCATTTTAGGTGGTCCTGGGTTGGTCTCATACTCCCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS GCA 72 bp | AGCATGAACATCTTGGTCAATAAATGGAGGAGACGTTaGCATCCATATTCCACAAAGAAGAAGTTGGATCAG | + |
|
Preference number: 6 (lower is better) Translates to: SMNILVNKWRRR*HPYSTKKKLDQ Trigger: CTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACGTCTCCTCCATTTATTGACCAAGATGTTCATGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS CAA 72 bp | CCAAGAGATATGTTGGGTAAAAGACTAGGGTTCCCATaGATCTCCTCAATAGCAAATACCAAAGCCAGAATA | + |
|
Preference number: 6 (lower is better) Translates to: PRDMLGKRLGFP*ISSIANTKARI Trigger: TATTCTGGCTTTGGTATTTGCTATTGAGGAGATCAATGGGAACCCTAGTCTTTTACCCAACATATCTCTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||
| CDS TCA 72 bp | CCTTCTAGAATGTGTTTTGTCCCTGATATGATGAAATaGATTCTTCTCTGGTCTCAACAAGATAATGTAACA | + |
|
Preference number: 6 (lower is better) Translates to: PSRMCFVPDMMK*ILLWSQQDNVT Trigger: TGTTACATTATCTTGTTGAGACCAGAGAAGAATTCATTTCATCATATCAGGGACAAAACACATTCTAGAAGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167093.3 |
||