Pregenerated sensors for VMN2R106 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091656Ensembl transcript IDs: ENSMUST00000167464.3, ENSMUST00000233061.2, ENSMUST00000233933.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGTTGTAGGATGCAGGTaGTCAGGTTGGGTTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSVVGCR*SGWVDQ Trigger: TTGGTCAACCCAACCTGACCACCTGCATCCTACAAC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCCTCACCATTCTCCCTaGAAAAGTGGCTCTGAATGC | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSPHHSP*KSGSEC Trigger: GCATTCAGAGCCACTTTTCCAGGGAGAATGGTGAGG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGTGGTCAGGTTGGGTTaGCCAATGAAGTTCAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSVVRLG*PMKFKE Trigger: CTCTTTGAACTTCATTGGTCAACCCAACCTGACCAC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGCTTACAACTCTCACTaGACACAGACTGGGGGATAT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSAYNSH*TQTGGY Trigger: ATATCCCCCAGTCTGTGTGCAGTGAGAGTTGTAAGC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCTTCTGCACAAGGAGTaGAATTGTAGCAGCAGATCG | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSLLHKE*NCSSRS Trigger: CGATCTGCTGCTACAATTGCACTCCTTGTGCAGAAG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGGTATATCCTCCAAATaGCAAGGAGCAGAGGTATCC | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSGISSK*QGAEVS Trigger: GGATACCTCTGCTCCTTGGCATTTGGAGGATATACC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGAATTTGCTAAAATGTaGAGTCCAGGTGGCAGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSEFAKM*SPGGRD Trigger: ATCCCTGCCACCTGGACTTCACATTTTAGCAAATTC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGGTTGGGTTGACCAATaGAGTTCAAAGAGCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSGWVDQ*SSKSKG Trigger: TCCTTTGCTCTTTGAACTTCATTGGTCAACCCAACC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGACAACTGTTGGTGCTaGGCAGTATTTGCAGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSDNCWC*AVFAEK Trigger: CTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGAGTGTCCTTCTCAGTaGATCGGACATTGTAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSECPSQ*IGHCRN Trigger: ATTTCTACAATGTCCGATTCACTGAGAAGGACACTC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167464.3 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCAGGACCACCTAAAATaGACCATCAAAGAGACAATG | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSQDHLK*TIKETM Trigger: CATTGTCTCTTTGATGGTTCATTTTAGGTGGTCCTG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCCAGGATTATTTTTCTaGATCCGGGCTTACAACTCT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSPGLFF*IRAYNS Trigger: AGAGTTGTAAGCCCGGATTCAGAAAAATAATCCTGG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGAACATCATTGTCAATaGATGGAGGAGAGATTGCCA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSEHHCQ*MEERLP Trigger: TGGCAATCTCTCCTCCATTCATTGACAATGATGTTC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAAAGACAACTGTTGGTaGTGGGCAGTATTTGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSKDNCW*WAVFAE Trigger: TTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAAGAGCCATAGTGAATaGAACTCCAAATGTGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSKSHSE*NSKCGL Trigger: CAGACCACATTTGGAGTTGCATTCACTATGGCTCTT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAAAATGCACCAATCATaGCATCTCCTTCATGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSKMHQS*HLLHGE Trigger: TTCACCATGAAGGAGATGTCATGATTGGTGCATTTT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCTCCAAGATGTTCCTGTaGGTGCAGCAGAAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSSKMFL*VQQKIF Trigger: AAAAATTTTCTGCTGCACTCACAGGAACATCTTGGA...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGTGCTGGGCAGTATTTaGAGAAAAGGATCCTATTTT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSVLGSI*RKGSYF Trigger: AAAATAGGATCCTTTTCTGCAAATACTGCCCAGCAC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAATCCTTCTGGCCATTaGATCATCTCTTCAGACAAA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSNPSGH*IISSDK Trigger: TTTGTCTGAAGAGATGATCCAATGGCCAGAAGGATT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCATCATTGTCAATGAATaGAGGAGAGATTGCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSIIVNE*RRDCHP Trigger: TGGATGGCAATCTCTCCTCCATTCATTGACAATGAT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCACATCTCCTTCATGGTaGAAATCTTCAGTAGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSTSPSW*KSSVVL Trigger: CAAAACTACTGAAGATTTTCACCATGAAGGAGATGT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGTTTTCTGGAAGCAGTaGTTCTTCTCTGTATTTGAA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSVFWKQ*FFSVFE Trigger: TTCAAATACAGAGAAGAATCACTGCTTCCAGAAAAC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCCATCAAAGAGACAATaGCATGTGAAAGTGATGTAT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSPSKRQ*HVKVMY Trigger: ATACATCACTTTCACATGGCATTGTCTCTTTGATGG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCAGACTCCTTTTCTCTaGATGTCTTCTTTGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSQTPFL*MSSLIS Trigger: AGAAATCAAAGAAGACATGCAGAGAAAAGGAGTCTG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAGAAATCTCATCTTCTaGACAAGGAGTGCAATTGTA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSRNLIF*TRSAIV Trigger: TACAATTGCACTCCTTGTGCAGAAGATGAGATTTCT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCATTTTATTCCCTTTGTaGTCATCTGGAAGGATGAGA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSILFPL*SSGRMR Trigger: TCTCATCCTTCCAGATGACCACAAAGGGAATAAAAT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCATAGTCAGTAACATGTaGTTCAATGTTCAAGACCCA | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSIVSNM*FNVQDP Trigger: TGGGTCTTGAACATTGAACCACATGTTACTGACTAT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 |
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| CDS-3UTR GCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAAAAGTGGCTCTGAATaGAATAACTACAGTAATAGC | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSKSGSE*NNYSNS Trigger: GCTATTACTGTAGTTATTGCATTCAGAGCCACTTTT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CCA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCACATCCCCATTTTCATaGGGTTGTATTTGTATTTGT | + |
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Preference number: 4 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSTSPFS*GCICIC Trigger: ACAAATACAAATACAACCCCATGAAAATGGGGATGT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 |
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| CDS TCA 90 bp | TGCAATTGTAGCAGCAGATCGCCTTGCCCTCCAGGATTATTTTTCTaGATCCGGGCTTACAACTCTCACTGCACACAGACTGGGGGATAT | + |
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Preference number: 5 (lower is better) Translates to: CNCSSRSPCPPGLFF*IRAYNSHCTQTGGY Trigger: ATATCCCCCAGTCTGTGTGCAGTGAGAGTTGTAAGCCCGGATTCAGAAAAATAATCCTGGAGGGCAAGGCGATCTGCTGCTACAATTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 90 bp | TCACTGCACACAGACTGGGGGATATCTAAAAATCCTTCTGGCCATTaGATCATCTCTTCAGACAAAGACAACTGTTGGTGCTGGGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: SLHTDWGISKNPSGH*IISSDKDNCWCWAV Trigger: TACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGAAGGATTTTTAGATATCCCCCAGTCTGTGTGCAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS GCA 90 bp | CCTTCTGGCCATTGGATCATCTCTTCAGACAAAGACAACTGTTGGTaGTGGGCAGTATTTGCAGAAAAGGATCCTATTTTCACCTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: PSGHWIISSDKDNCW*WAVFAEKDPIFTFS Trigger: ACTAAAGGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 90 bp | TCTGGCCATTGGATCATCTCTTCAGACAAAGACAACTGTTGGTGCTaGGCAGTATTTGCAGAAAAGGATCCTATTTTCACCTTTAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: SGHWIISSDKDNCWC*AVFAEKDPIFTFSP Trigger: TGGACTAAAGGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGCTCGGTTATTGGCCTaGACAATAGGAGTGTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSARLLA*TIGVSL Trigger: CAGAGACACTCCTATTGTCAAGGCCAATAACCGAGC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAGACAAAGACAACTGTaGGTGCTGGGCAGTATTTGC | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSRQRQL*VLGSIC Trigger: GCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGGTGGTCAGGTTGGGTaGACCAATGAAGTTCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSGGQVG*TNEVQR Trigger: TCTTTGAACTTCATTGGTCAACCCAACCTGACCACC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCTGTAGTTTGGGACCCTaGACATCATTAGCCACCTCA | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSCSLGP*TSLATS Trigger: TGAGGTGGCTAATGATGTCAAGGGTCCCAAACTACA...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCAAATCCTTCTGGCCATaGGATCATCTCTTCAGACAA | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSKSFWP*DHLFRQ Trigger: TTGTCTGAAGAGATGATCCAATGGCCAGAAGGATTT...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCTCAGAAAATGAGCACTaGAAGAACAAATGCCACAAC | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSSENEH*KNKCHN Trigger: GTTGTGGCATTTGTTCTTCAAGTGCTCATTTTCTGA...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCCAATCTAAACTCATGTaGTCTCTCTCATCAATTTCC | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSQSKLM*SLSSIS Trigger: GGAAATTGATGAGAGAGACAACATGAGTTTAGATTG...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS-3UTR CAA 90 bp | CAGTTACCATGCCAACAATTCATAGACTTAACAATTCATAGACTTTTAAGGAGCGATTCTTCTCTGTATTaGAATAATGACTCTCTGGAC | + |
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Preference number: 5 (lower is better) Translates to: QLPCQQFIDLTIHRLLRSDSSLY*NNDSLD Trigger: GTCCAGAGAGTCATTATTCAAATACAGAGAAGAATC...GCTCCTTAAAAGTCTATGAATTGTTAAGTCTATGAATTGTTGGCATGGTAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS TCA 72 bp | GTGGTCTGTTGTAGGATGCAGGTGGTCAGGTTGGGTTaGCCAATGAAGTTCAAAGAGCAAAGGAAGCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: VVCCRMQVVRLG*PMKFKEQRKQK Trigger: CTTCTGCTTCCTTTGCTCTTTGAACTTCATTGGTCAACCCAACCTGACCACCTGCATCCTACAACAGACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS TCA 72 bp | TCTGGAAGGATGAGACCAACCCAGGACCACCTAAAATaGACCATCAAAGAGACAATGCCATGTGAAAGTGAT | + |
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Preference number: 6 (lower is better) Translates to: SGRMRPTQDHLK*TIKETMPCESD Trigger: ATCACTTTCACATGGCATTGTCTCTTTGATGGTTCATTTTAGGTGGTCCTGGGTTGGTCTCATCCTTCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 72 bp | ACAGACTGGGGGATATCTAAAAATCCTTCTGGCCATTaGATCATCTCTTCAGACAAAGACAACTGTTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: TDWGISKNPSGH*IISSDKDNCWC Trigger: GCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGAAGGATTTTTAGATATCCCCCAGTCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 72 bp | TGGCCATTGGATCATCTCTTCAGACAAAGACAACTGTaGGTGCTGGGCAGTATTTGCAGAAAAGGATCCTAT | + |
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Preference number: 6 (lower is better) Translates to: WPLDHLFRQRQL*VLGSICRKGSY Trigger: ATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 90 bp | GGATCATCTCTTCAGACAAAGACAACTGTTGGTGCTGGGCAGTATTaGCAGAAAAGGATCCTATTTTCACCTTTAGTCCAAGACCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GSSLQTKTTVGAGQY*QKRILFSPLVQDPL Trigger: CAAAGGGTCTTGGACTAAAGGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS GCA 72 bp | TTGATCCACATCAGTCTCATTAGAAATCTCATCTTCTaGACAAGGAGTGCAATTGTAGCAGCAGATCGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LIHISLIRNLIF*TRSAIVAADRL Trigger: AAGGCGATCTGCTGCTACAATTGCACTCCTTGTGCAGAAGATGAGATTTCTAATGAGACTGATGTGGATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 72 bp | TCTTCTTTGATTTCTGGTAGAATTTTATTCCCTTTGTaGTCATCTGGAAGGATGAGACCAACCCAGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: SSLISGRILFPL*SSGRMRPTQDH Trigger: GTGGTCCTGGGTTGGTCTCATCCTTCCAGATGACCACAAAGGGAATAAAATTCTACCAGAAATCAAAGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 72 bp | TGGATCATCTCTTCAGACAAAGACAACTGTTGGTGCTaGGCAGTATTTGCAGAAAAGGATCCTATTTTCACC | + |
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Preference number: 6 (lower is better) Translates to: WIISSDKDNCWC*AVFAEKDPIFT Trigger: GGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 90 bp | AAATCCTTCTGGCCATTGGATCATCTCTTCAGACAAAGACAACTGTaGGTGCTGGGCAGTATTTGCAGAAAAGGATCCTATTTTCACCTT | + |
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Preference number: 6 (lower is better) Translates to: KSFWPLDHLFRQRQL*VLGSICRKGSYFHL Trigger: AAGGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGAAGGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CCA 72 bp | GGTAGAGAGAAAAATACTGACTTCGGTCACTCAAGATaGGATCATAAGGTCCATAGGAAAGCTGTGGAAATT | + |
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Preference number: 6 (lower is better) Translates to: GREKNTDFGHSR*DHKVHRKAVEI Trigger: AATTTCCACAGCTTTCCTATGGACCTTATGATCCCATCTTGAGTGACCGAAGTCAGTATTTTTCTCTCTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 72 bp | CTTCAGACAAAGACAACTGTTGGTGCTGGGCAGTATTaGCAGAAAAGGATCCTATTTTCACCTTTAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: LQTKTTVGAGQY*QKRILFSPLVQ Trigger: TTGGACTAAAGGTGAAAATAGGATCCTTTTCTGCAAATACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 90 bp | TTTCTCTGCATGTCTTCTTTGATTTCTGGTAGAATTTTATTCCCTTaGTGGTCATCTGGAAGGATGAGACCAACCCAGGACCACCTAAAA | + |
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Preference number: 6 (lower is better) Translates to: FLCMSSLISGRILFP*WSSGRMRPTQDHLK Trigger: TTTTAGGTGGTCCTGGGTTGGTCTCATCCTTCCAGATGACCACAAAGGGAATAAAATTCTACCAGAAATCAAAGAAGACATGCAGAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 90 bp | CCAGAAAAATCACAGTTTTCTGGAAGCAGTGATTCTTCTCTGTATTaGAATAATGACTCTCTGGACACTTCACACATTGATCCACATCAG | + |
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Preference number: 6 (lower is better) Translates to: PEKSQFSGSSDSSLY*NNDSLDTSHIDPHQ Trigger: CTGATGTGGATCAATGTGTGAAGTGTCCAGAGAGTCATTATTCAAATACAGAGAAGAATCACTGCTTCCAGAAAACTGTGATTTTTCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS TCA 72 bp | CACAGTTTTCTGGAAGCAGTGATTCTTCTCTGTATTTaGATAATGACTCTCTGGACACTTCACACATTGATC | + |
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Preference number: 6 (lower is better) Translates to: HSFLEAVILLCI*IMTLWTLHTLI Trigger: GATCAATGTGTGAAGTGTCCAGAGAGTCATTATTCAAATACAGAGAAGAATCACTGCTTCCAGAAAACTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS GCA 72 bp | ATTTCCTTTAAGAAAGTGTTAAGAATTGTTATTACCTaGCAGGGCGAGAACACCAACACATCCCCATTTTCA | + |
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Preference number: 6 (lower is better) Translates to: ISFKKVLRIVIT*QGENTNTSPFS Trigger: TGAAAATGGGGATGTGTTGGTGTTCTCGCCCTGGCAGGTAATAACAATTCTTAACACTTTCTTAAAGGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 |
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| CDS CCA 72 bp | GTATCCATGTTCAGTATGAACATCATTGTCAATGAATaGAGGAGAGATTGCCATCCATATTCCACAAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: VSMFSMNIIVNE*RRDCHPYSTKK Trigger: CTTCTTTGTGGAATATGGATGGCAATCTCTCCTCCATTCATTGACAATGATGTTCATACTGAACATGGATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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| CDS CAA 72 bp | TCACAGTTTTCTGGAAGCAGTGATTCTTCTCTGTATTaGAATAATGACTCTCTGGACACTTCACACATTGAT | + |
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Preference number: 6 (lower is better) Translates to: SQFSGSSDSSLY*NNDSLDTSHID Trigger: ATCAATGTGTGAAGTGTCCAGAGAGTCATTATTCAAATACAGAGAAGAATCACTGCTTCCAGAAAACTGTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167464.3 ENSMUST00000233061.2 ENSMUST00000233933.2 |
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