Pregenerated sensors for VMN2R104 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090315Ensembl transcript IDs: ENSMUST00000168050.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GAAGCATCAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATaGTGGTTTTCAAACATGGAAATAAATGGCTTTCACACTATCACA | + |
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Preference number: 2 (lower is better) Translates to: EASGLQLRDIESPEK*WFSNMEINGFHTIT Trigger: TGTGATAGTGTGAAAGCCATTTATTTCCATGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTGATGCTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAAGGCAAGGAGTGCTGTaGTGGAGGCCAAGATTGAGA | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTRQGVL*WRPRLR Trigger: TCTCAATCTTGGCCTCCAGCACAGCACTCCTTGCCT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAATTTGGGACCAAATATaGAGGCAAGGAGTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTIWDQI*RQGVLC Trigger: GCACAGCACTCCTTGCCTTCATATTTGGTCCCAAAT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACACAAGGAGTGCTGTGCTaGAGGCCAAGATTGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTQGVLC*RPRLRI Trigger: TATTCTCAATCTTGGCCTCCAGCACAGCACTCCTTG...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAGGGGTTCATTGTTCATaGTCCAGATGTTCCATGTCA | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTGVHCS*SRCSMS Trigger: TGACATGGAACATCTGGATCATGAACAATGAACCCC...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAGAATCTAGTAAAATATaGGGTCCATGTGGCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTESSKI*GPCGWD Trigger: ATCCCAGCCACATGGACCTCATATTTTACTAGATTC...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAAGACTGAGGGACTTCTaGAAATATTTCTGGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTRLRDF*KYFWPL Trigger: CAATGGCCAGAAATATTTTCAGAAGTCCCTCAGTCT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACATCACTGCACACAGACTaGGGGACTTCTGAAAATATT | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTSLHTD*GTSENI Trigger: AATATTTTCAGAAGTCCCTCAGTCTGTGTGCAGTGA...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAAAAGCTCACAGATTTTaGGAAGCAGTTGCTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTKAHRF*EAVALL Trigger: GAGAAGAGCAACTGCTTCCCAAAATCTGTGAGCTTT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACATATTTGGATTCCTGTTaGTCTCCTCAATGGCAAATA | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTYLDSC*SPQWQI Trigger: TATTTGCCATTGAGGAGATCAACAGGAATCCAAATA...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAATGAAGAGGGAAAAATaGACCAATCATCACATCTTC | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTMKREK*TNHHIF Trigger: GAAGATGTGATGATTGGTGCATTTTTCCCTCTTCAT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAGTAATTAGGTATCATTaGTCTCTTTACATGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTVIRYH*SLYMGC Trigger: ACAGCCCATGTAAAGAGAGCAATGATACCTAATTAC...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CCA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAATTTTATTTCCTTTGTaGTTATCGGGGATGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: QVFNSEILNHQKNCGFQTILFPL*LSGMMR Trigger: CCTCATCATCCCCGATAACCACAAAGGAAATAAAAT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 90 bp | AATAGCTTTGGCCAACACAGTGGCAAGAGCCATAGTGAAAGCAACTaGAAAGGTGGTCTGCTGAAGGATGCAGGCAGCTGTGTTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: NSFGQHSGKSHSESN*KGGLLKDAGSCVGL Trigger: CAGCCCAACACAGCTGCCTGCATCCTTCAGCAGACCACCTTTGCAGTTGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS TCA 90 bp | TGCACTTGTAGCAGCAGATGGCCTTATCATCCAGGGATACTTTCCTaGATCCAGGCCTACAACTCTCACTGCACACAGACTGAGGGACTT | + |
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Preference number: 5 (lower is better) Translates to: CTCSSRWPYHPGILS*IQAYNSHCTQTEGL Trigger: AAGTCCCTCAGTCTGTGTGCAGTGAGAGTTGTAGGCCTGGATTCAGGAAAGTATCCCTGGATGATAAGGCCATCTGCTGCTACAAGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 90 bp | AGGGGTCTTCATAGGCCAGAAAGCTCACAGATTTTGGGAAGCAGTTaGTCTTCTCTGTATTTGCATAATGACTCTCTGGACACTTCACAC | + |
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Preference number: 5 (lower is better) Translates to: RGLHRPESSQILGSS*SSLYLHNDSLDTSH Trigger: GTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAATCTGTGAGCTTTCTGGCCTATGAAGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 90 bp | TCCATCTTCAGTATTAACATCTTGGTCAATGAATGGTGGAGAAGTTaGCATCCATATTCCACAAAGAAGAAGCTGGATCAGTGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: SIFSINILVNEWWRS*HPYSTKKKLDQCAD Trigger: ATCTGCACACTGATCCAGCTTCTTCTTTGTGGAATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACTGAAGATGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 90 bp | ACCATCGTCACTCAAGGTTGGCTCATAAGGTCCAAAAGTAATCTGTaGAAATTTAAAGAGTTGAAGCAATGTCCCAATTTGGGCAGATGT | + |
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Preference number: 5 (lower is better) Translates to: TIVTQGWLIRSKSNL*KFKELKQCPNLGRC Trigger: ACATCTGCCCAAATTGGGACATTGCTTCAACTCTTTAAATTTCCACAGATTACTTTTGGACCTTATGAGCCAACCTTGAGTGACGATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 90 bp | TTTTGGGAAGCAGTTGCTCTTCTCTGTATTTGCATAATGACTCTCTaGACACTTCACACACTGGTCTACATCTGTCTCATTAGATATCTC | + |
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Preference number: 5 (lower is better) Translates to: FWEAVALLCICIMTL*TLHTLVYICLIRYL Trigger: GAGATATCTAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 90 bp | TTCCTTTTGTCTTTCACTTCAATGTCCTTCAGGAATGTGTTTAGCTaGCATGGAAAGAACACCATCTCTTCTCCATTTTCAAATGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: FLLSFTSMSFRNVFS*HGKNTISSPFSNAC Trigger: GCAAGCATTTGAAAATGGAGAAGAGATGGTGTTCTTTCCATGGCAGCTAAACACATTCCTGAAGGACATTGAAGTGAAAGACAAAAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAAAGGCTATGCAGATTTaGTTTCTCTCCATCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTKAMQI*FLSISS Trigger: GGAGGAGATGGAGAGAAACAAAATCTGCATAGCCTT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAGACCCTGAGGAGCATTaGCAGAAAAGGATCCTATTT | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTDPEEH*QKRILF Trigger: AAATAGGATCCTTTTCTGCAAATGCTCCTCAGGGTC...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAGAAAGCTCACAGATTTaGGGAAGCAGTTGCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTESSQI*GSSCSS Trigger: AGAAGAGCAACTGCTTCCCAAAATCTGTGAGCTTTC...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAACTACAGTAATAGCTTaGGCCAACACAGTGGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTTTVIA*ANTVAR Trigger: TCTTGCCACTGTGTTGGCCAAAGCTATTACTGTAGT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAACAGCTGAGCCCTTGTaGCACAAAAGGATGATGTAT | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTTAEPL*HKRMMY Trigger: ATACATCATCCTTTTGTGCAACAAGGGCTCAGCTGT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 90 bp | TGGGGTTCATTGTTCATGATCCAGATGTTCCATGTCAATAACCTTTaGCCAATAATTTGCATAAGAATTTCTAAAGAATCAATGTCACCA | + |
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Preference number: 5 (lower is better) Translates to: WGSLFMIQMFHVNNL*PIICIRISKESMSP Trigger: TGGTGACATTGATTCTTTAGAAATTCTTATGCAAATTATTGGGCAAAGGTTATTGACATGGAACATCTGGATCATGAACAATGAACCCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAAACAAGAATTTTATTTCCTTaGTGGTTATCGGGGATGATG | + |
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Preference number: 5 (lower is better) Translates to: QVFNSEILNHQKNCGFQTRILFP*WLSGMM Trigger: CATCATCCCCGATAACCACAAAGGAAATAAAATTCT...TGTTTGAAAACCACAATTTTTCTGGTGATTCAATATCTCTGAGTTGAAGACCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 72 bp | GGCCAACACAGTGGCAAGAGCCATAGTGAAAGCAACTaGAAAGGTGGTCTGCTGAAGGATGCAGGCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: GQHSGKSHSESN*KGGLLKDAGSC Trigger: ACAGCTGCCTGCATCCTTCAGCAGACCACCTTTGCAGTTGCTTTCACTATGGCTCTTGCCACTGTGTTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | CCAAGGGCCAAGAAACAGAGGTATCCCAGGACTGAATaGAAGGCAACAGCTGAGCCCTTGTTGCACAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: PRAKKQRYPRTE*KATAEPLLHKR Trigger: CCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCAGTCCTGGGATACCTCTGTTTCTTGGCCCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 90 bp | CTCCCTGGAAAACTGATCTTAAAGGCAAGGACTACAGTAATAGCTTaGGCCAACACAGTGGCAAGAGCCATAGTGAAAGCAACTGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LPGKLILKARTTVIA*ANTVARAIVKATAK Trigger: CTTTGCAGTTGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTACTGTAGTCCTTGCCTTTAAGATCAGTTTTCCAGGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 72 bp | CACAGATTTTGGGAAGCAGTTGCTCTTCTCTGTATTTaGATAATGACTCTCTGGACACTTCACACACTGGTC | + |
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Preference number: 6 (lower is better) Translates to: HRFWEAVALLCI*IMTLWTLHTLV Trigger: GACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAATCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 72 bp | CATAGGCCAGAAAGCTCACAGATTTTGGGAAGCAGTTaGTCTTCTCTGTATTTGCATAATGACTCTCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: HRPESSQILGSS*SSLYLHNDSLD Trigger: GTCCAGAGAGTCATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAATCTGTGAGCTTTCTGGCCTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | CAAGGGGTCTTCATAGGCCAGAAAGCTCACAGATTTTaGGAAGCAGTTGCTCTTCTCTGTATTTGCATAATG | + |
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Preference number: 6 (lower is better) Translates to: QGVFIGQKAHRF*EAVALLCICIM Trigger: CATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAATCTGTGAGCTTTCTGGCCTATGAAGACCCCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS TCA 72 bp | TCGGGGATGATGAGGCCAATCCAAGACCAACTAAAATaGACCATGAAAGAAACAATGGCAAGGGAAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: SGMMRPIQDQLK*TMKETMARERE Trigger: TTCTCTTTCCCTTGCCATTGTTTCTTTCATGGTTCATTTTAGTTGGTCTTGGATTGGCCTCATCATCCCCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | TCACAGATTTTGGGAAGCAGTTGCTCTTCTCTGTATTaGCATAATGACTCTCTGGACACTTCACACACTGGT | + |
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Preference number: 6 (lower is better) Translates to: SQILGSSCSSLY*HNDSLDTSHTG Trigger: ACCAGTGTGTGAAGTGTCCAGAGAGTCATTATGCAAATACAGAGAAGAGCAACTGCTTCCCAAAATCTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | AAACTGATCTTAAAGGCAAGGACTACAGTAATAGCTTaGGCCAACACAGTGGCAAGAGCCATAGTGAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: KLILKARTTVIA*ANTVARAIVKA Trigger: TGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTACTGTAGTCCTTGCCTTTAAGATCAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS GCA 72 bp | AGTATTAACATCTTGGTCAATGAATGGTGGAGAAGTTaGCATCCATATTCCACAAAGAAGAAGCTGGATCAG | + |
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Preference number: 6 (lower is better) Translates to: SINILVNEWWRS*HPYSTKKKLDQ Trigger: CTGATCCAGCTTCTTCTTTGTGGAATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | TCCTCCCTAAATTCTGATAGAATTTTATTTCCTTTGTaGTTATCGGGGATGATGAGGCCAATCCAAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: SSLNSDRILFPL*LSGMMRPIQDQ Trigger: TTGGTCTTGGATTGGCCTCATCATCCCCGATAACCACAAAGGAAATAAAATTCTATCAGAATTTAGGGAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | ATCTCCTCCCTAAATTCTGATAGAATTTTATTTCCTTaGTGGTTATCGGGGATGATGAGGCCAATCCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: ISSLNSDRILFP*WLSGMMRPIQD Trigger: GTCTTGGATTGGCCTCATCATCCCCGATAACCACAAAGGAAATAAAATTCTATCAGAATTTAGGGAGGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 90 bp | TTTCTCTCCATCTCCTCCCTAAATTCTGATAGAATTTTATTTCCTTaGTGGTTATCGGGGATGATGAGGCCAATCCAAGACCAACTAAAA | + |
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Preference number: 6 (lower is better) Translates to: FLSISSLNSDRILFP*WLSGMMRPIQDQLK Trigger: TTTTAGTTGGTCTTGGATTGGCCTCATCATCCCCGATAACCACAAAGGAAATAAAATTCTATCAGAATTTAGGGAGGAGATGGAGAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 90 bp | CTTGTTGCACAAAAGGATGATGTATCCATCTTCAGTATTAACATCTaGGTCAATGAATGGTGGAGAAGTTGCCATCCATATTCCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: LVAQKDDVSIFSINI*VNEWWRSCHPYSTK Trigger: CTTTGTGGAATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACTGAAGATGGATACATCATCCTTTTGTGCAACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | GTATCCATCTTCAGTATTAACATCTTGGTCAATGAATaGTGGAGAAGTTGCCATCCATATTCCACAAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: VSIFSINILVNE*WRSCHPYSTKK Trigger: CTTCTTTGTGGAATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACTGAAGATGGATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | GTGGCTGGGATCATTTTTAAAAAGGCTATGCAGATTTaGTTTCTCTCCATCTCCTCCCTAAATTCTGATAGA | + |
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Preference number: 6 (lower is better) Translates to: VAGIIFKKAMQI*FLSISSLNSDR Trigger: TCTATCAGAATTTAGGGAGGAGATGGAGAGAAACAAAATCTGCATAGCCTTTTTAAAAATGATCCCAGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | ACTCAAGGTTGGCTCATAAGGTCCAAAAGTAATCTGTaGAAATTTAAAGAGTTGAAGCAATGTCCCAATTTG | + |
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Preference number: 6 (lower is better) Translates to: TQGWLIRSKSNL*KFKELKQCPNL Trigger: CAAATTGGGACATTGCTTCAACTCTTTAAATTTCCACAGATTACTTTTGGACCTTATGAGCCAACCTTGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | CAAAAGGATGATGTATCCATCTTCAGTATTAACATCTaGGTCAATGAATGGTGGAGAAGTTGCCATCCATAT | + |
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Preference number: 6 (lower is better) Translates to: QKDDVSIFSINI*VNEWWRSCHPY Trigger: ATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACTGAAGATGGATACATCATCCTTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CAA 72 bp | AACACCAGCATACTGAATGACAGAAATTTGGATTCATaGAATGTATCAGGCAAATTTCTAGACAAGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: NTSILNDRNLDS*NVSGKFLDKKA Trigger: GGCCTTCTTGTCTAGAAATTTGCCTGATACATTCAATGAATCCAAATTTCTGTCATTCAGTATGCTGGTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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| CDS CCA 72 bp | AAAAGGATGATGTATCCATCTTCAGTATTAACATCTTaGTCAATGAATGGTGGAGAAGTTGCCATCCATATT | + |
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Preference number: 6 (lower is better) Translates to: KRMMYPSSVLTS*SMNGGEVAIHI Trigger: AATATGGATGGCAACTTCTCCACCATTCATTGACCAAGATGTTAATACTGAAGATGGATACATCATCCTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168050.3 |
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