Pregenerated sensors for VMN1R9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091541Ensembl transcript IDs: ENSMUST00000171186.2, ENSMUST00000227399.2, ENSMUST00000228714.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGAGAGAGGATAGCCCATGTCCGGCAAGAGTTCCTCCTATGCTCTaGGCAGGTGGACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCT | + |
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Preference number: 1 (lower is better) Translates to: GREDSPCPARVPPML*AGGRWRAATGFHSA Trigger: AGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACATGGGCTATCCTCTCTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR GCA 90 bp | GAGTGGGGAGAGAGGATAGCCCATGTCCGGCAAGAGTTCCTCCTATaGTCTGCGCAGGTGGACGCTGGAGGGCTGCCACTGGTTTCCACT | + |
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Preference number: 1 (lower is better) Translates to: EWGERIAHVRQEFLL*SAQVDAGGLPLVST Trigger: AGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACATGGGCTATCCTCTCTCCCCACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 90 bp | CGACAGGAGCCAGGGTTCCAGGAGACTCTTTCCCTCCCATGTAGGTaGATTATCACCACCAGAACTTGGGGTTCAACATCTAGCCTCAAC | + |
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Preference number: 1 (lower is better) Translates to: RQEPGFQETLSLPCR*IITTRTWGSTSSLN Trigger: GTTGAGGCTAGATGTTGAACCCCAAGTTCTGGTGGTGATAATTCACCTACATGGGAGGGAAAGAGTCTCCTGGAACCCTGGCTCCTGTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 90 bp | CTATGGGCAGGTTCCAGGGAATTCTATGTTATCTTTTCACCTCTGTaGACACCAGGAATGCACACATGCATACATGCTGGTGTGGTATTC | + |
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Preference number: 1 (lower is better) Translates to: LWAGSREFYVIFSPL*TPGMHTCIHAGVVF Trigger: GAATACCACACCAGCATGTATGCATGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGATAACATAGAATTCCCTGGAACCTGCCCATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 90 bp | GGAATATCACCTTGTCCCAGAGAGAGATGCTATCAAGACAGTAGGTaGATGGCATCTGAAAATGAAAAGCCAAGGTTGTCTCCTGTCTTC | + |
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Preference number: 1 (lower is better) Translates to: GISPCPRERCYQDSR*MASENEKPRLSPVF Trigger: GAAGACAGGAGACAACCTTGGCTTTTCATTTTCAGATGCCATTCACCTACTGTCTTGATAGCATCTCTCTCTGGGACAAGGTGATATTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 90 bp | TATCACCTTGTCCCAGAGAGAGATGCTATCAAGACAGTAGGTGAATaGCATCTGAAAATGAAAAGCCAAGGTTGTCTCCTGTCTTCCATG | + |
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Preference number: 1 (lower is better) Translates to: YHLVPERDAIKTVGE*HLKMKSQGCLLSSM Trigger: CATGGAAGACAGGAGACAACCTTGGCTTTTCATTTTCAGATGCCATTCACCTACTGTCTTGATAGCATCTCTCTCTGGGACAAGGTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 90 bp | AGGAAACCCAGTAGAAAGGTAATAGAAAGACTAGAAAAGCCTAAATaGATGGAGGACACCAGGGAAACAAAGCCTTCTAAACACAGCCCA | + |
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Preference number: 1 (lower is better) Translates to: RKPSRKVIERLEKPK*MEDTRETKPSKHSP Trigger: TGGGCTGTGTTTAGAAGGCTTTGTTTCCCTGGTGTCCTCCATCCATTTAGGCTTTTCTAGTCTTTCTATTACCTTTCTACTGGGTTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 90 bp | ACAAATAAAATGACTCCTACTGACATTCTGATGAATTCATTGATCTaGGTCTCATTCAGCCATCATCAGAGAGGCTTCCTCCAGAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: TNKMTPTDILMNSLI*VSFSHHQRGFLQKK Trigger: CTTCTTCTGGAGGAAGCCTCTCTGATGATGGCTGAATGAGACTCAGATCAATGAATTCATCAGAATGTCAGTAGGAGTCATTTTATTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCCACACAGCAAGAGTGTaGGCAGCTGGCCTTGATGAG | + |
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Preference number: 2 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLHTARV*AAGLDE Trigger: CTCATCAAGGCCAGCTGCGCACACTCTTGCTGTGTG...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCCTGTGCATAGCCCAATaGCCCGCAGCAAGTTACTTT | + |
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Preference number: 2 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLLCIAQ*PAASYF Trigger: AAAGTAACTTGCTGCGGGGCATTGGGCTATGCACAG...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCTACCCAGCACTGCTTTaGTTTTCCAGAATATGGGAC | + |
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Preference number: 2 (lower is better) Translates to: MSGKSSSYALRRWTLEGCYPALL*FSRIWD Trigger: GTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTA...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCTATACAATTCTCCTGTaGGGACTGAGGAGGGCGGTA | + |
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Preference number: 2 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLYTILL*GLRRAV Trigger: TACCGCCCTCCTCAGTCCCCACAGGAGAATTGTATA...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCATCTTTTCACCTCTGTaGACACCAGGAATGCACACA | + |
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Preference number: 2 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLIFSPL*TPGMHT Trigger: TGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGAT...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | TATACAATTCTCCTGTGGGGACTGAGGAGGGCGGTAACTTCGACAGGAGCCAGGCTAGAAAAGCCTAAATaGATGGAGGACACCAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: YTILLWGLRRAVTSTGARLEKPK*MEDTRE Trigger: TTCCCTGGTGTCCTCCATCCATTTAGGCTTTTCTAG...CCTGGCTCCTGTCGAAGTTACCGCCCTCCTCAGTCCCCACAGGAGAATTGTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGCTCAATGGGAACCTCCAAATAATGCAAGATGTGGCAACTAAAAAGGAGTATGCTCTGCGCAGGTaGACGCTGGAGGGCTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: KELNGNLQIMQDVATKKEYALRR*TLEGCH Trigger: GTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATA...CTCCTTTTTAGTTGCCACATCTTGCATTATTTGGAGGTTCCCATTGAGCTCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | GTGGGGCTACTCAGGATGATTCTATATAAACTGCTCTATGGGCAGGTTCCAGGGCCAGGAATGCACACATaGATACATGCTGGTGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: VGLLRMILYKLLYGQVPGPGMHT*IHAGVV Trigger: TACCACACCAGCATGTATGCATGTGTGCATTCCTGG...CCCTGGAACCTGCCCATAGAGCAGTTTATATAGAATCATCCTGAGTAGCCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | GCTAGAGAGGGAGAAACAGGAGAAGATCTGGGAATATCACCTTGTCCCAGAGAGCCAGGAATGCACACATaGATACATGCTGGTGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: AREGETGEDLGISPCPREPGMHT*IHAGVV Trigger: TACCACACCAGCATGTATGCATGTGTGCATTCCTGG...CTCTCTGGGACAAGGTGATATTCCCAGATCTTCTCCTGTTTCTCCCTCTCTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCTTCTAAACACAGCCCAGTGGACACACATAGAAACTCAGAGACTGTTGCAAGCAGCAGTGGATATGTaGCACTTGCCAGAGCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: SLLNTAQWTHIETQRLLQAAVDM*HLPELE Trigger: CTCTAGCTCTGGCAAGTGGCACATATCCACTGCTGC...TTGCAACAGTCTCTGAGTTTCTATGTGTGTCCACTGGGCTGTGTTTAGAAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR TCA 90 bp | TATACAATTCTCCTGTGGGGACTGAGGAGGGCGGTAACTTCGACAGGAGCCAGGTATCAAGACAGTAGGTaGATGGCATCTGAAAATGAA | + |
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Preference number: 2 (lower is better) Translates to: YTILLWGLRRAVTSTGARYQDSR*MASENE Trigger: TTCATTTTCAGATGCCATTCACCTACTGTCTTGATA...CCTGGCTCCTGTCGAAGTTACCGCCCTCCTCAGTCCCCACAGGAGAATTGTATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | GTGGGGCTACTCAGGATGATTCTATATAAACTGCTCTATGGGCAGGTTCCAGGGGCACACATGCATACATaGTGGTGTGGTATTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: VGLLRMILYKLLYGQVPGAHMHT*WCGIHR Trigger: TCTGTGAATACCACACCAGCATGTATGCATGTGTGC...CCCTGGAACCTGCCCATAGAGCAGTTTATATAGAATCATCCTGAGTAGCCCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | GCTAGAGAGGGAGAAACAGGAGAAGATCTGGGAATATCACCTTGTCCCAGAGAGGCACACATGCATACATaGTGGTGTGGTATTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: AREGETGEDLGISPCPREAHMHT*WCGIHR Trigger: TCTGTGAATACCACACCAGCATGTATGCATGTGTGC...CTCTCTGGGACAAGGTGATATTCCCAGATCTTCTCCTGTTTCTCCCTCTCTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGCTCAATGGGAACCTCCAAATAATGCAAGATGTGGCAACTAAAAAGGAGGTCCTAGAGCAGCAGTaGATATGTGCCACTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: KELNGNLQIMQDVATKKEVLEQQ*ICATCQ Trigger: CTGGCAAGTGGCACATATCCACTGCTGCTCTAGGAC...CTCCTTTTTAGTTGCCACATCTTGCATTATTTGGAGGTTCCCATTGAGCTCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CAA 90 bp | TTAAAGCATGGAATCCATGAGATTGAAACCATACCCAGCACTGCTTaGGTTTTCCAGAATATGGGACAAGTTAGGCCTAGGACCAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: LKHGIHEIETIPSTA*VFQNMGQVRPRTKN Trigger: GTTCTTGGTCCTAGGCCTAACTTGTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTATGGTTTCAATCTCATGGATTCCATGCTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGCTCAATGGGAACCTCCAAATAATGCAAGATGTGGCAACTAAAAAGGAGTACCCAGCACTGCTTTaGTTTTCCAGAATATGGGAC | + |
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Preference number: 2 (lower is better) Translates to: KELNGNLQIMQDVATKKEYPALL*FSRIWD Trigger: GTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTA...CTCCTTTTTAGTTGCCACATCTTGCATTATTTGGAGGTTCCCATTGAGCTCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | TACATCTGTGTGGATCATAATGTATGGTGCTGGAAGGTAACATACACACTACCATTCCATGTGCACACATaGACACATCGTTCTTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: YICVDHNVWCWKVTYTLPFHVHT*THRSSV Trigger: CACAGAAGAACGATGTGTGCATGTGTGCACATGGAA...TGGTAGTGTGTATGTTACCTTCCAGCACCATACATTATGATCCACACAGATGTA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTAACATACACACTACCAAAGGAACAAACCACTACAAATGCTGCAGTCTACATCTTTTCACCTCTGTaGACACCAGGAATGCACACA | + |
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Preference number: 2 (lower is better) Translates to: KVTYTLPKEQTTTNAAVYIFSPL*TPGMHT Trigger: TGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGAT...GTAGACTGCAGCATTTGTAGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | TACATCTGTGTGGATCATAATGTATGGTGCTGGAAGGTAACATACACACTACCAAAACAGGAGAAGATCTaGGAATATCACCTTGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: YICVDHNVWCWKVTYTLPKQEKI*EYHLVP Trigger: TGGGACAAGGTGATATTCCCAGATCTTCTCCTGTTT...TGGTAGTGTGTATGTTACCTTCCAGCACCATACATTATGATCCACACAGATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTAACATACACACTACCAAAGGAACAAACCACTACAAATGCTGCAGTCTACTGGTTTTCCAGAATATaGGACAAGTTAGGCCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: KVTYTLPKEQTTTNAAVYWFSRI*DKLGLG Trigger: TCCTAGGCCTAACTTGTCCCATATTCTGGAAAACCA...GTAGACTGCAGCATTTGTAGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGTAACATACACACTACCAAAGGAACAAACCACTACAAATGCTGCAGTCTACAAACTCAGAGACTGTTaGAACATGCACTATCTGTAC | + |
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Preference number: 2 (lower is better) Translates to: KVTYTLPKEQTTTNAAVYKLRDC*NMHYLY Trigger: GTACAGATAGTGCATGTTGCAACAGTCTCTGAGTTT...GTAGACTGCAGCATTTGTAGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR TCA 90 bp | CATAATGTATGGTGCTGGAAGGTAACATACACACTACCAAAGGAACAAACCACTTATCAAGACAGTAGGTaGATGGCATCTGAAAATGAA | + |
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Preference number: 2 (lower is better) Translates to: HNVWCWKVTYTLPKEQTTYQDSR*MASENE Trigger: TTCATTTTCAGATGCCATTCACCTACTGTCTTGATA...AGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTTCCAGCACCATACATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | CATAATGTATGGTGCTGGAAGGTAACATACACACTACCAAAGGAACAAACCACTAAGACAGTAGGTGAATaGCATCTGAAAATGAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: HNVWCWKVTYTLPKEQTTKTVGE*HLKMKS Trigger: GCTTTTCATTTTCAGATGCCATTCACCTACTGTCTT...AGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTTCCAGCACCATACATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTAACATACACACTACCAAAGGAACAAACCACTACAAATGCTGCAGTCTACAAGACAGTAGGTGAATaGCATCTGAAAATGAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: KVTYTLPKEQTTTNAAVYKTVGE*HLKMKS Trigger: GCTTTTCATTTTCAGATGCCATTCACCTACTGTCTT...GTAGACTGCAGCATTTGTAGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTaGACGCTGGAGGGCTGCCACTGGTTTCCACTCGGC | + |
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Preference number: 3 (lower is better) Translates to: MSGKSSSYALRR*TLEGCHWFPLG Trigger: GCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR GCA 72 bp | GATAGCCCATGTCCGGCAAGAGTTCCTCCTATGCTCTaGGCAGGTGGACGCTGGAGGGCTGCCACTGGTTTC | + |
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Preference number: 3 (lower is better) Translates to: DSPCPARVPPML*AGGRWRAATGF Trigger: GAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACATGGGCTATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | GCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTaGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATG | + |
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Preference number: 3 (lower is better) Translates to: ARVPPMLCAGGR*RAATGFHSAQM Trigger: CATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR GCA 72 bp | TCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTaGCACTGGTTTCCACTCGGCTCAGATGGGTATCTA | + |
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Preference number: 3 (lower is better) Translates to: SSYALRRWTLEG*HWFPLGSDGYL Trigger: TAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | TATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCCACTaGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: YALRRWTLEGCH*FPLGSDGYLSL Trigger: GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGTCCACCTGCGCAGAGCATA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCCAGAAGACTGGGACATaGCCTAAGTGGCTGCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLQKTGT*PKWLLA Trigger: AGCTAGCAGCCACTTAGGCAATGTCCCAGTCTTCTG...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCATACCCAGCACTGCTTaGGTTTTCCAGAATATGGGA | + |
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Preference number: 3 (lower is better) Translates to: MSGKSSSYALRRWTLEGCIPSTA*VFQNMG Trigger: TCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTAT...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCATGGAATCCATGAGATaGAAACCATACCCAGCACTG | + |
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Preference number: 3 (lower is better) Translates to: MSGKSSSYALRRWTLEGCMESMR*KPYPAL Trigger: CAGTGCTGGGTATGGTTTCAATCTCATGGATTCCAT...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCTTGCTATCTTTTCTGTaGCTAGGTAACTGGGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: MSGKSSSYALRRWTLEGCLLSFL*LGNWGG Trigger: TCCTCCCCAGTTACCTAGCAACAGAAAAGATAGCAA...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | ACGCTGGAGGGCTGCCACTGGTTTCCACTCGGCTCAGATGGGTATCTAAGCCTCTTGCTATCTTTTCTGTaGCTAGGTAACTGGGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: TLEGCHWFPLGSDGYLSLLLSFL*LGNWGG Trigger: TCCTCCCCAGTTACCTAGCAACAGAAAAGATAGCAA...GAGGCTTAGATACCCATCTGAGCCGAGTGGAAACCAGTGGCAGCCCTCCAGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | ACCACCAGAACTTGGGGTTCAACATCTAGCCTCAACTaGAAACCAGACTGTCTGTGCATAGCCCAATGCCCC | + |
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Preference number: 3 (lower is better) Translates to: TTRTWGSTSSLN*KPDCLCIAQCP Trigger: GGGGCATTGGGCTATGCACAGACAGTCTGGTTTCCAGTTGAGGCTAGATGTTGAACCCCAAGTTCTGGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 72 bp | CCAGGGTTCCAGGAGACTCTTTCCCTCCCATGTAGGTaGATTATCACCACCAGAACTTGGGGTTCAACATCT | + |
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Preference number: 3 (lower is better) Translates to: PGFQETLSLPCR*IITTRTWGSTS Trigger: AGATGTTGAACCCCAAGTTCTGGTGGTGATAATTCACCTACATGGGAGGGAAAGAGTCTCCTGGAACCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 72 bp | AGGGGAGAGAAGACAAAGAGGAGAGGAGTGAGAGAGTaGGGAGGAGTCAAACAGCCATGCTTAAAGTATGTT | + |
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Preference number: 3 (lower is better) Translates to: RGEKTKRRGVRE*GGVKQPCLKYV Trigger: AACATACTTTAAGCATGGCTGTTTGACTCCTCCTCACTCTCTCACTCCTCTCCTCTTTGTCTTCTCTCCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | GAAAGACTAGAAAAGCCTAAATGGATGGAGGACACCAGGGAAACAAAGCCTTCTTCTGGGAATATCACCTaGTCCCAGAGAGAGATGCTA | + |
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Preference number: 3 (lower is better) Translates to: ERLEKPKWMEDTRETKPSSGNIT*SQREML Trigger: TAGCATCTCTCTCTGGGACAAGGTGATATTCCCAGA...AGAAGGCTTTGTTTCCCTGGTGTCCTCCATCCATTTAGGCTTTTCTAGTCTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | ACACCAGGGAAACAAAGCCTTCTAAACACAGCCCAGTaGACACACATAGAAACTCAGAGACTGTTGCAACAT | + |
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Preference number: 3 (lower is better) Translates to: TPGKQSLLNTAQ*THIETQRLLQH Trigger: ATGTTGCAACAGTCTCTGAGTTTCTATGTGTGTCCACTGGGCTGTGTTTAGAAGGCTTTGTTTCCCTGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | AAACCATACCCAGCACTGCTTTGGTTTTCCAGAATATaGGACAAGTTAGGCCTAGGACCAAGAACCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: KPYPALLWFSRI*DKLGLGPRTKP Trigger: TGGTTTGGTTCTTGGTCCTAGGCCTAACTTGTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTATGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR TCA 72 bp | CCTTGTCCCAGAGAGAGATGCTATCAAGACAGTAGGTaGATGGCATCTGAAAATGAAAAGCCAAGGTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: PCPRERCYQDSR*MASENEKPRLS Trigger: AGACAACCTTGGCTTTTCATTTTCAGATGCCATTCACCTACTGTCTTGATAGCATCTCTCTCTGGGACAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR GCA 72 bp | TCTATGTTATCTTTTCACCTCTGTGGACACCAGGAATaGACACATGCATACATGCTGGTGTGGTATTCACAG | + |
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Preference number: 3 (lower is better) Translates to: SMLSFHLCGHQE*THAYMLVWYSQ Trigger: CTGTGAATACCACACCAGCATGTATGCATGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGATAACATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | GAATCCATGAGATTGAAACCATACCCAGCACTGCTTTaGTTTTCCAGAATATGGGACAAGTTAGGCCTAGGA | + |
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Preference number: 3 (lower is better) Translates to: ESMRLKPYPALL*FSRIWDKLGLG Trigger: TCCTAGGCCTAACTTGTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTATGGTTTCAATCTCATGGATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR GCA 72 bp | ATCTTTTCACCTCTGTGGACACCAGGAATGCACACATaGATACATGCTGGTGTGGTATTCACAGATATAACT | + |
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Preference number: 3 (lower is better) Translates to: IFSPLWTPGMHT*IHAGVVFTDIT Trigger: AGTTATATCTGTGAATACCACACCAGCATGTATGCATGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | ACAGCCTACATCTGTGTGGATCATAATGTATGGTGCTaGAAGGTAACATACACACTACCAAAGGAACAAACC | + |
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Preference number: 3 (lower is better) Translates to: TAYICVDHNVWC*KVTYTLPKEQT Trigger: GGTTTGTTCCTTTGGTAGTGTGTATGTTACCTTCCAGCACCATACATTATGATCCACACAGATGTAGGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCTAAAACTTATAGTAGTAACCAACCAATCTCTGATTAGATTTAAAGCATGGTCTGGGAATATCACCTaGTCCCAGAGAGAGATGCTA | + |
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Preference number: 3 (lower is better) Translates to: GLKLIVVTNQSLIRFKAWSGNIT*SQREML Trigger: TAGCATCTCTCTCTGGGACAAGGTGATATTCCCAGA...CCATGCTTTAAATCTAATCAGAGATTGGTTGGTTACTACTATAAGTTTTAGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCTAAAACTTATAGTAGTAACCAACCAATCTCTGATTAGATTTAAAGCATGGAATGAAAAGCCAAGGTaGTCTCCTGTCTTCCATGTG | + |
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Preference number: 3 (lower is better) Translates to: GLKLIVVTNQSLIRFKAWNEKPR*SPVFHV Trigger: CACATGGAAGACAGGAGACAACCTTGGCTTTTCATT...CCATGCTTTAAATCTAATCAGAGATTGGTTGGTTACTACTATAAGTTTTAGGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCTAAAACTTATAGTAGTAACCAACCAATCTCTGATTAGATTTAAAGCATGGATACCCAGCACTGCTTaGGTTTTCCAGAATATGGGA | + |
|
Preference number: 3 (lower is better) Translates to: GLKLIVVTNQSLIRFKAWIPSTA*VFQNMG Trigger: TCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTAT...CCATGCTTTAAATCTAATCAGAGATTGGTTGGTTACTACTATAAGTTTTAGGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | AGTAGAAAGGTAATAGAAAGACTAGAAAAGCCTAAATaGATGGAGGACACCAGGGAAACAAAGCCTTCTAAA | + |
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Preference number: 3 (lower is better) Translates to: SRKVIERLEKPK*MEDTRETKPSK Trigger: TTTAGAAGGCTTTGTTTCCCTGGTGTCCTCCATCCATTTAGGCTTTTCTAGTCTTTCTATTACCTTTCTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CCA 72 bp | TTCTCATCACTAAATGATGCATCCTGTACTGGGAATTaGATAAATCTAATGAAGTTGTTAGCTAAAGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: FSSLNDASCTGN*INLMKLLAKGA Trigger: AGCTCCTTTAGCTAACAACTTCATTAGATTTATCCAATTCCCAGTACAGGATGCATCATTTAGTGATGAGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCCTGATAGTGACAGCCTaGAACACACTCAGAAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: MSGKSSSYALRRWTLEGCLIVTA*NTLRRQ Trigger: CTGCCTTCTGAGTGTGTTCCAGGCTGTCACTATCAG...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCGAAGAAGAACCATATTaGCTAGGACTCCAAGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: MSGKSSSYALRRWTLEGCEEEPY*LGLQVQ Trigger: CTGGACTTGGAGTCCTAGCCAATATGGTTCTTCTTC...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CAA 72 bp | CAAGCTCTCCCAATAAATGTGTGCAGAAGTATCCTGTaGCAGCGTCGTTCTTGCTGGCGAGTCAGGGCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: QALPINVCRSIL*QRRSCWRVRAH Trigger: GTGCGCCCTGACTCGCCAGCAAGAACGACGCTGCAACAGGATACTTCTGCACACATTTATTGGGAGAGCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CAA 72 bp | ACAGCCCAGTGGACACACATAGAAACTCAGAGACTGTaGCAACATGCACTATCTGTACCTGATGGGGTCCTA | + |
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Preference number: 4 (lower is better) Translates to: TAQWTHIETQRL*QHALSVPDGVL Trigger: TAGGACCCCATCAGGTACAGATAGTGCATGTTGCAACAGTCTCTGAGTTTCTATGTGTGTCCACTGGGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CCA 90 bp | GCTAGAGAGGGAGAAACAGGAGAAGATCTGGGAATATCACCTTGTCCCAGAGAGGAAGAAGAACCATATTaGCTAGGACTCCAAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: AREGETGEDLGISPCPREEEEPY*LGLQVQ Trigger: CTGGACTTGGAGTCCTAGCCAATATGGTTCTTCTTC...CTCTCTGGGACAAGGTGATATTCCCAGATCTTCTCCTGTTTCTCCCTCTCTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CCA 90 bp | AGCCTTCTAAACACAGCCCAGTGGACACACATAGAAACTCAGAGACTGTTGCAACTGATAGTGACAGCCTaGAACACACTCAGAAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLNTAQWTHIETQRLLQLIVTA*NTLRRQ Trigger: CTGCCTTCTGAGTGTGTTCCAGGCTGTCACTATCAG...TTGCAACAGTCTCTGAGTTTCTATGTGTGTCCACTGGGCTGTGTTTAGAAGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| 3UTR CAA 72 bp | GGAATCCATGAGATTGAAACCATACCCAGCACTGCTTaGGTTTTCCAGAATATGGGACAAGTTAGGCCTAGG | + |
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Preference number: 4 (lower is better) Translates to: GIHEIETIPSTA*VFQNMGQVRPR Trigger: CCTAGGCCTAACTTGTCCCATATTCTGGAAAACCAAAGCAGTGCTGGGTATGGTTTCAATCTCATGGATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CCA 90 bp | GGCCTAAAACTTATAGTAGTAACCAACCAATCTCTGATTAGATTTAAAGCATGGAACAGTCAGGATGAGTaGGTCATACATCCATATCAT | + |
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Preference number: 4 (lower is better) Translates to: GLKLIVVTNQSLIRFKAWNSQDE*VIHPYH Trigger: ATGATATGGATGTATGACCCACTCATCCTGACTGTT...CCATGCTTTAAATCTAATCAGAGATTGGTTGGTTACTACTATAAGTTTTAGGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCGGCAAGAGTTCCTCCTATGCTCTGCGCAGGTGGACGCTGGAGGGCTGCGTGACCTGCATCTGGTaGGTCTCACTCACATTAGTA | + |
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Preference number: 5 (lower is better) Translates to: MSGKSSSYALRRWTLEGCVTCIW*VSLTLV Trigger: TACTAATGTGAGTGAGACCAACCAGATGCAGGTCAC...GCAGCCCTCCAGCGTCCACCTGCGCAGAGCATAGGAGGAACTCTTGCCGGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CAA 90 bp | GCTAGAGAGGGAGAAACAGGAGAAGATCTGGGAATATCACCTTGTCCCAGAGAGGACTCCAAGTCCAGCTaGGAAATAAAGAACATTCTT | + |
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Preference number: 5 (lower is better) Translates to: AREGETGEDLGISPCPREDSKSS*EIKNIL Trigger: AAGAATGTTCTTTATTTCCAAGCTGGACTTGGAGTC...CTCTCTGGGACAAGGTGATATTCCCAGATCTTCTCCTGTTTCTCCCTCTCTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CAA 90 bp | AGCCTTCTAAACACAGCCCAGTGGACACACATAGAAACTCAGAGACTGTTGCAAGACTCCAAGTCCAGCTaGGAAATAAAGAACATTCTT | + |
|
Preference number: 5 (lower is better) Translates to: SLLNTAQWTHIETQRLLQDSKSS*EIKNIL Trigger: AAGAATGTTCTTTATTTCCAAGCTGGACTTGGAGTC...TTGCAACAGTCTCTGAGTTTCTATGTGTGTCCACTGGGCTGTGTTTAGAAGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS-3UTR CAA 90 bp | AAGGTAACATACACACTACCAAAGGAACAAACCACTACAAATGCTGCAGTCTACGTGACCTGCATCTGGTaGGTCTCACTCACATTAGTA | + |
|
Preference number: 5 (lower is better) Translates to: KVTYTLPKEQTTTNAAVYVTCIW*VSLTLV Trigger: TACTAATGTGAGTGAGACCAACCAGATGCAGGTCAC...GTAGACTGCAGCATTTGTAGTGGTTTGTTCCTTTGGTAGTGTGTATGTTACCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS CCA 72 bp | ATGGGTAAGAGTGAGCAGGATTTAGTGACCTGCATCTaGTTGGTCTCACTCACATTAGTAAAACCACCAACA | + |
|
Preference number: 6 (lower is better) Translates to: MGKSEQDLVTCI*LVSLTLVKPPT Trigger: TGTTGGTGGTTTTACTAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCTCACTCTTACCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000171186.2 ENSMUST00000227399.2 ENSMUST00000228714.2 |
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| CDS GCA 72 bp | ATGTTCATGGGTAAGAGTGAGCAGGATTTAGTGACCTaGATCTGGTTGGTCTCACTCACATTAGTAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: MFMGKSEQDLVT*IWLVSLTLVKP Trigger: TGGTTTTACTAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCTCACTCTTACCCATGAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000171186.2 ENSMUST00000227399.2 ENSMUST00000228714.2 |
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