RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R88 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000117853

Ensembl transcript IDs: ENSMUST00000171783.2, ENSMUST00000236472.2, ENSMUST00000237109.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCCCTCTTTCGGACCTTCATCTTCAGCCAGGAGGCAGATCTGAATaGCAGACCTCTGTGCACCTTACCTGCAAGAGGAGAGCTTGCCTG +
Preference number: 1 (lower is better)
Translates to: GPLSDLHLQPGGRSE*QTSVHLTCKRRACL
Trigger: CAGGCAAGCTCTCCTCTTGCAGGTAAGGTGCACAGAGGTCTGGCATTCAGATCTGCCTCCTGGCTGAAGATGAAGGTCCGAAAGAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 90 bp GAAAGGCCCTCTTTCGGACCTTCATCTTCAGCCAGGAGGCAGATCTaGATGCCAGACCTCTGTGCACCTTACCTGCAAGAGGAGAGCTTG +
Preference number: 1 (lower is better)
Translates to: ERPSFGPSSSARRQI*MPDLCAPYLQEESL
Trigger: CAAGCTCTCCTCTTGCAGGTAAGGTGCACAGAGGTCTGGCATTCAGATCTGCCTCCTGGCTGAAGATGAAGGTCCGAAAGAGGGCCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 90 bp AGAGAAGAGTTGTCCACCCAGGAGGGCTCTGACCGCCAAAGCAGGTaGGAGAGTCATCTTGTGTCCCTCATTCCTAAGAGACCAGTCTGT +
Preference number: 1 (lower is better)
Translates to: REELSTQEGSDRQSR*ESHLVSLIPKRPVC
Trigger: ACAGACTGGTCTCTTAGGAATGAGGGACACAAGATGACTCTCTCACCTGCTTTGGCGGTCAGAGCCCTCCTGGGTGGACAACTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp TGCCTGGCAAATAACAGAAGTGGATGCTCACAGTCATCTATGAGATaGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAG +
Preference number: 1 (lower is better)
Translates to: CLANNRSGCSQSSMR*NTGPPMEKLEKVPE
Trigger: CTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCATAGATGACTGTGAGCATCCACTTCTGTTATTTGCCAGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp CCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTaGATACCCAAACACACCCGAAAAGCAAGACTCAGATTTAAAATC +
Preference number: 1 (lower is better)
Translates to: PLTIIRTQHSHLSQS*IPKHTRKARLRFKI
Trigger: GATTTTAAATCTGAGTCTTGCTTTTCGGGTGTGTTTGGGTATCCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 90 bp AGATGGCCTAGTCAGCCATCATTGAGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACAGGGTAACACCAGAGCCAAGA +
Preference number: 1 (lower is better)
Translates to: RWPSQPSLRREAPWY*KLYMPQYRVTPEPR
Trigger: TCTTGGCTCTGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 90 bp TCTCAAATGAGACTGTACCAGTGCCTGGCAAATAACAGAAGTGGATaGTCACAGTCATCTATGAGATGGAACACAGGGCCCCCAATGGAG +
Preference number: 1 (lower is better)
Translates to: SQMRLYQCLANNRSG*SQSSMRWNTGPPME
Trigger: CTCCATTGGGGGCCCTGTGTTCCATCTCATAGATGACTGTGAGCATCCACTTCTGTTATTTGCCAGGCACTGGTACAGTCTCATTTGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 90 bp TCTCTGGCTGCATATGTATCAGAAGATGGCCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGT +
Preference number: 1 (lower is better)
Translates to: SLAAYVSEDGLVSHH*EERPLGIANFICPS
Trigger: ACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCTTCTGATACATATGCAGCCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp CGTATTTCTTGTTCTCGCTGTAGAAACGTGCCTGGAGTTGTGCCATaGCTGAATATACATACACACGAGGCTTCTCCACGAAAATGTGTG +
Preference number: 1 (lower is better)
Translates to: RISCSRCRNVPGVVP*LNIHTHEASPRKCV
Trigger: CACACATTTTCGTGGAGAAGCCTCGTGTGTATGTATATTCAGCCATGGCACAACTCCAGGCACGTTTCTACAGCGAGAACAAGAAATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp ATGAAAAGAGTTACAGAGACAAAGTTTGGAGCTAAGACGAAAGGATaGACCATCCAGAGACTATCCCACCCAGGGATCCATCCCATAATC +
Preference number: 1 (lower is better)
Translates to: MKRVTETKFGAKTKG*TIQRLSHPGIHPII
Trigger: GATTATGGGATGGATCCCTGGGTGGGATAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGTAACTCTTTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp ATTACTCCAGATTTCTCACCAGAGACTATGAAAGCCAGAAGATCCTaGACAGATGTTATACAGACACAAAGAGAACACAAGTACAGGCCA +
Preference number: 1 (lower is better)
Translates to: ITPDFSPETMKARRS*TDVIQTQREHKYRP
Trigger: TGGCCTGTACTTGTGTTCTCTTTGTGTCTGTATAACATCTGTCCAGGATCTTCTGGCTTTCATAGTCTCTGGTGAGAAATCTGGAGTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp TCACAGAAAGCCACAACTGATCACAGTGTAGAAATTAAAAGATTGTaGAGAGCCATGCTCCAATATCTACAACTACATCACAGCTCCTGC +
Preference number: 1 (lower is better)
Translates to: SQKATTDHSVEIKRL*RAMLQYLQLHHSSC
Trigger: GCAGGAGCTGTGATGTAGTTGTAGATATTGGAGCATGGCTCTCCACAATCTTTTAATTTCTACACTGTGATCAGTTGTGGCTTTCTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp TGCTCCACTATGTTCATAGCAGCCTTCTTTATAATAGCCAGAAGCTaGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAA +
Preference number: 1 (lower is better)
Translates to: CSTMFIAAFFIIARS*KEPKYPSTEEWIQK
Trigger: TTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTGGCTATTATAAAGAAGGCTGCTATGAACATAGTGGAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp ATGGTCTTCCCTATGGAAAAGGATACCAATTGTTTCCATTACAACTaGCTATTCAATATCAAATGGCCAGCCGTGAATACACACATACAT +
Preference number: 1 (lower is better)
Translates to: MVFPMEKDTNCFHYN*LFNIKWPAVNTHIH
Trigger: ATGTATGTGTGTATTCACGGCTGGCCATTTGATATTGAATAGCCAGTTGTAATGGAAACAATTGGTATCCTTTTCCATAGGGAAGACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 90 bp AGAAACATAGAACACCCAAGATACAATTTGCAAAACACAAGACAATaGAGAAGAGGGAAGACCAATGGGAGGATACTTTATTCCTCCTTA +
Preference number: 1 (lower is better)
Translates to: RNIEHPRYNLQNTRQ*RRGKTNGRILYSSL
Trigger: TAAGGAGGAATAAAGTATCCTCCCATTGGTCTTCCCTCTTCTTCATTGTCTTGTGTTTTGCAAATTGTATCTTGGGTGTTCTATGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 90 bp AGCATTTTCCAGGGAAAATGCCCAATGCAGAGTGGTCATTATACATaGAAACAACAGACACAGATTCAGCAGATTGTATTTCTATACATT +
Preference number: 1 (lower is better)
Translates to: SIFQGKCPMQSGHYT*KQQTQIQQIVFLYI
Trigger: AATGTATAGAAATACAATCTGCTGAATCTGTGTCTGTTGTTTGCATGTATAATGACCACTCTGCATTGGGCATTTTCCCTGGAAAATGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp AAGGATACCAATTGTTTCCATTACAACTGGCTATTCAATATCAAATaGCCAGCCGTGAATACACACATACATACATACATACATACATAC +
Preference number: 1 (lower is better)
Translates to: KDTNCFHYNWLFNIK*PAVNTHIHTYIHTY
Trigger: GTATGTATGTATGTATGTATGTATGTGTGTATTCACGGCTGGCCATTTGATATTGAATAGCCAGTTGTAATGGAAACAATTGGTATCCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 90 bp AACCCAATCACAAAAGAAGTCATTATATATGCACTCACTGATAAGTaGATATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGCA +
Preference number: 1 (lower is better)
Translates to: NPITKEVIIYALTDK*ILAQKHRTPKIQFA
Trigger: TGCAAATTGTATCTTGGGTGTTCTATGTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATATAATGACTTCTTTTGTGATTGGGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCCGGGCTCCAGACATCTaGGCACCTTCCCCTCCAGAG +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAIRAPDI*APSPPE
Trigger: CTCTGGAGGGGAAGGTGCCCAGATGTCTGGAGCCCG...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 90 bp CCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCTaGAGTACCAGGTCCCTCAGAGACCAGTCTGCACAGGTGAGAGTG +
Preference number: 2 (lower is better)
Translates to: PPGRALTARAGEGAI*STRSLRDQSAQVRV
Trigger: CACTCTCACCTGTGCAGACTGGTCTCTGAGGGACCTGGTACTCAAGATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCACACCCAGCCTGTGTGTaGGGTGAGAGACAGCGACAC +
Preference number: 2 (lower is better)
Translates to: GPPMEKLEKVPEELKGSAHPACV*GERQRH
Trigger: GTGTCGCTGTCTCTCACCTCACACACAGGCTGGGTG...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCACCAGTCTGTGCAGGTaGGCATGCAGACTGCAGAAG +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAITSLCR*ACRLQK
Trigger: CTTCTGCAGTCTGCATGCTCACCTGCACAGACTGGT...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCAAGCGACACAGCTTCTaGGACAGGCAGAAGCAACAC +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAIKRHSF*DRQKQH
Trigger: GTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCGCTT...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 90 bp CCACCCAGGAGGGCTCTGACCGCCAAAGCAGGTGAGAGAGTCATCTaGTGTCCCTCATTCCTAAGAGACCAGTCTGTGCAGGTGAGCATG +
Preference number: 2 (lower is better)
Translates to: PPRRALTAKAGERVI*CPSFLRDQSVQVSM
Trigger: CATGCTCACCTGCACAGACTGGTCTCTTAGGAATGAGGGACACAAGATGACTCTCTCACCTGCTTTGGCGGTCAGAGCCCTCCTGGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACACACCCAGCCTGTGTGTaGGGTGAGAGACAGCGACAC +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTHPACV*GERQRH
Trigger: GTGTCGCTGTCTCTCACCTCACACACAGGCTGGGTG...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACACCCACACTCCCAGCATaGCCTTGGCAGCAGTGCAGA +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTPTLPA*PWQQCR
Trigger: TCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGG...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp CTATCGACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGACCTGGAGTTGTGCCATaGCTGAATATACATACACAC +
Preference number: 2 (lower is better)
Translates to: LSTAMAPTLPACPWQQCRPGVVP*LNIHTH
Trigger: GTGTGTATGTATATTCAGCCATGGCACAACTCCAGG...TCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGTCGATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGACCAGAGCCAAGAAGTaGGAGAGGGTGGGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEETRAKK*ERVGRE
Trigger: CTCCCTACCCACCCTCTCCCACTTCTTGGCTCTGGT...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCACTGCTTTGGCTGGGGTaGGGTGTACTTTTCCACATA +
Preference number: 2 (lower is better)
Translates to: GPPMEKLEKVPEELKGSALLWLG*GVLFHI
Trigger: TATGTGGAAAAGTACACCGCACCCCAGCCAAAGCAG...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGAGCCTGTGTGTGAGGTaGGAGACAGCGACACCAAAA +
Preference number: 2 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEESLCVR*ETATPK
Trigger: TTTTGGTGTCGCTGTCTCTCACCTCACACACAGGCT...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCCACAATATCTTTCCATaGATCCAGCCCTTCAAAGGA +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAIHNIFP*IQPFKG
Trigger: TCCTTTGAAGGGCTGGATTCATGGAAAGATATTGTG...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACAAAGCAACACAGCTTCTaGGACAGACCCCGTTTCGGG +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTKQHSF*DRPRFG
Trigger: CCCGAAACGGGGTCTGTCCCAGAAGCTGTGTTGCTT...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACACTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTGGT +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTLVSHH*EERPLG
Trigger: ACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAG...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCAGCTCTAAGGTAGGTTaGGCCGCAATTTTTAATAGT +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAISSKVG*AAIFNS
Trigger: ACTATTAAAAATTGCGGCGCAACCTACCTTAGAGCT...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCACTCCCAGCATGCCCTTaGCAGCAGTGCAGAGCTTTC +
Preference number: 2 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPLPACP*QQCRAF
Trigger: GAAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAG...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACAACCAGAGCCAAGAAGTaGGAGAGGGTGGGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: THLREKDRHNLRVKGWKTTRAKK*ERVGRE
Trigger: CTCCCTACCCACCCTCTCCCACTTCTTGGCTCTGGT...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAGCAGCGGCAGGGATTaGGAAAGGGACATCATCCAC +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRSSGRD*ERDIIH
Trigger: GTGGATGATGTCCCTTTCTCAATCCCTGCCGCTGCT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATCTGCTTTGGCTGGGGTaGGGTGTACTTTTCCACATA +
Preference number: 2 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHLLWLG*GVLFHI
Trigger: TATGTGGAAAAGTACACCGCACCCCAGCCAAAGCAG...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACATGCCCTTGGCAGCAGTaGAGAGCTTTCACTTTGTTC +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTCPWQQ*RAFTLF
Trigger: GAACAAAGTGAAAGCTCTGCACTGCTGCCAAGGGCA...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCAGAGAGAATCTCAGGTaGAGAAGATTTCATAGAGAA +
Preference number: 2 (lower is better)
Translates to: KRCPPGRALTARAGEGAIRENLR*RRFHRE
Trigger: TTCTCTATGAAATCTTCTGCACCTGAGATTCTCTCT...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATATATACAGCTGGGCCTaGAGGGAGGAAAATAAGGGG +
Preference number: 2 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHIYSWA*REENKG
Trigger: CCCCTTATTTTCCTCCCTCCAGGCCCAGCTGTATAT...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGCAGGATTTGTTTTGTTaGTACATCTGTTGGGATTGG +
Preference number: 2 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWQDLFC*YICWDW
Trigger: CCAATCCCAACAGATGTACCAACAAAACAAATCCTG...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGAAGAAGTATTCTTTATaGAGTTGGACCCTTAAGGAG +
Preference number: 2 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWKKYSL*SWTLKE
Trigger: CTCCTTAAGGGTCCAACTGCATAAAGAATACTTCTT...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGAATTCTGAATATCTATaGTGCAAATGCAATGGCAGC +
Preference number: 2 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWNSEYL*CKCNGS
Trigger: GCTGCCATTGCATTTGCAGCATAGATATTCAGAATT...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCAGAACATGCACTGCTTTaGCTGGGGTGCGGTGTACTT +
Preference number: 2 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPEHALL*LGCGVL
Trigger: AAGTACACCGCACCCCAGCCAAAGCAGTGCATGTTC...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACAGAACATGCACTGCTTTaGCTGGGGTGCGGTGTACTT +
Preference number: 2 (lower is better)
Translates to: THLREKDRHNLRVKGWKTEHALL*LGCGVL
Trigger: AAGTACACCGCACCCCAGCCAAAGCAGTGCATGTTC...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCAATCAGCTGTTGTTCATaGGTAGGAAACCATTTCACT +
Preference number: 2 (lower is better)
Translates to: GPPMEKLEKVPEELKGSAISCCS*VGNHFT
Trigger: AGTGAAATGGTTTCCTACCCATGAACAACAGCTGAT...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAACTCAGGAGAGAGCTaGACTCCAAGGACTGCTGAC +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRNSGES*TPRTAD
Trigger: GTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAGGAAACCATTTCACTaGTGTCACCCAGCCTGTGTG +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRRKPFH*CHPACV
Trigger: CACACAGGCTGGGTGACATCAGTGAAATGGTTTCCT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATGACTGTACCAGTGCCTaGCAAATAACAGAAGTGGAT +
Preference number: 2 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHDCTSA*QITEVD
Trigger: ATCCACTTCTGTTATTTGCCAGGCACTGGTACAGTC...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGCTCAATTACCATAGATaGAGAAACCAACATATTCCA +
Preference number: 2 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWLNYHR*RNQHIP
Trigger: TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAG...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp ATGAATTTGAAAGGGAGCAAGAAGAAGCATATACAGCTGGGCCTGGAGGGAGGACACAACCTCTTCCGATaGAATGTTCTCCAGTTCCGT +
Preference number: 2 (lower is better)
Translates to: MNLKGSKKKHIQLGLEGGHNLFR*NVLQFR
Trigger: ACGGAACTGGAGAACATTTCATCGGAAGAGGTTGTG...TCCTCCCTCCAGGCCCAGCTGTATATGCTTCTTCTTGCTCCCTTTCAAATTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCACACAACCTCTTCCGATaGAATGTTCTCCAGTTCCGT +
Preference number: 2 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPHNLFR*NVLQFR
Trigger: ACGGAACTGGAGAACATTTCATCGGAAGAGGTTGTG...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCATTACCAGATCAATTaGACAGCAAATTCTCTGACC +
Preference number: 2 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEEHYQIN*TANSLT
Trigger: GGTCAGAGAATTTGCTGTGCAATTGATCTGGTAATG...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACAATGAGACTGTACCAGTaGCTGGCAAATAACAGAAGT +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTMRLYQ*LANNRS
Trigger: ACTTCTGTTATTTGCCAGGCACTGGTACAGTCTCAT...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTAGCAGCGGCAGGGATTaGGAAAGGGACATCATCCAC +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSSSGRD*ERDIIH
Trigger: GTGGATGATGTCCCTTTCTCAATCCCTGCCGCTGCT...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGTGGGATTCACTATTCTaGATTTTCATTGGTCATGGT +
Preference number: 2 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEEWDSLF*IFIGHG
Trigger: ACCATGACCAATGAAAATGCAGAATAGTGAATCCCA...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAGGGCCCAACATTTTTaGTGTTTACAGGAAACCCAC +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRRAQHF*CLQETH
Trigger: GTGGGTTTCCTGTAAACAGCAAAAATGTTGGGCCCT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACATACAAGGACATCCATTaGATAACTGCCAGTTGTTCC +
Preference number: 2 (lower is better)
Translates to: SNLTTETQERAGLQGLLTYKDIH*ITASCS
Trigger: GGAACAACTGGCAGTTATCCAATGGATGTCCTTGTA...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACATGTTGGTACATCTGTTaGGATTGGGATTCACTATTC +
Preference number: 2 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTCWYIC*DWDSLF
Trigger: GAATAGTGAATCCCAATCCCAACAGATGTACCAACA...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCAGCACAGCAAATTCTCTaGCCTCTGACTCTTAAAATG +
Preference number: 2 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPAQQIL*PLTLKM
Trigger: CATTTTAAGAGTCAGAGGTCAGAGAATTTGCTGTGC...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGCCCACACTCCCAGCATaGCCTTGGCAGCAGTGCAGA +
Preference number: 2 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMPTLPA*PWQQCR
Trigger: TCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGG...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACAAACTCGACATGTTTGTaGAGTTCATTTTTGGTCTCC +
Preference number: 2 (lower is better)
Translates to: SNLTTETQERAGLQGLLTNSTCL*SSFLVS
Trigger: GGAGACCAAAAATGAACTCCACAAACATGTCGAGTT...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACAATAATAGCCAGAAGCTaGAAAGAACCCAAATATCCC +
Preference number: 2 (lower is better)
Translates to: SNLTTETQERAGLQGLLTIIARS*KEPKYP
Trigger: GGGATATTTGGGTTCTTTCCAGCTTCTGGCTATTAT...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACAAAGAAGTATTCTTTATaGAGTTGGACCCTTAAGGAG +
Preference number: 2 (lower is better)
Translates to: SNLTTETQERAGLQGLLTKKYSL*SWTLKE
Trigger: CTCCTTAAGGGTCCAACTGCATAAAGAATACTTCTT...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACATATCTATGCTGCAAATaGAATGGCAGCCACATTCAT +
Preference number: 2 (lower is better)
Translates to: THLREKDRHNLRVKGWKTYLCCK*NGSHIH
Trigger: ATGAATGTGGCTGCCATTGCATTTGCAGCATAGATA...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGTGTTGGTACATCTGTTaGGATTGGGATTCACTATTC +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRCWYIC*DWDSLF
Trigger: GAATAGTGAATCCCAATCCCAACAGATGTACCAACA...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGAGGAAACCATTTCACTaGTGTCACCCAGCCTGTGTG +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKRKPFH*CHPACV
Trigger: CACACAGGCTGGGTGACATCAGTGAAATGGTTTCCT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCACTCCACGAAAATGTGTaGATTGATAATCAAGTAGCT +
Preference number: 2 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPLHENV*IDNQVA
Trigger: AGCTACTTGATTATCAATGCACACATTTTCGTGGAG...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGTGCCCTTGGCAGCAGTaGAGAGCTTTCACTTTGTTC +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKCPWQQ*RAFTLF
Trigger: GAACAAAGTGAAAGCTCTGCACTGCTGCCAAGGGCA...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTAGAAGCATATACAGCTaGGCCTGGAGGGAGGAAAAT +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSRSIYS*AWREEN
Trigger: ATTTTCCTCCCTCCAGGCCCAGCTGTATATGCTTCT...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGTACATCTGTTGGGATTaGGATTCACTATTCTGCATT +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRYICWD*DSLFCI
Trigger: AATGCAGAATAGTGAATCCCAATCCCAACAGATGTA...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACATCTGAAGAAACAAGCTaGAGTAGCCATTCTAATATC +
Preference number: 2 (lower is better)
Translates to: THLREKDRHNLRVKGWKTSEETS*SSHSNI
Trigger: GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGA...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAATTTTCCAAGCAAATaGTCTGAAGAAACAAGCTGG +
Preference number: 2 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRNFPSK*SEETSW
Trigger: CCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 90 bp CCATCACAGAAAGCCACAACTGATCACAGTGTAGAAATTAAAAGATaGTGGAGAGCCATGCTCCAATATCTACAACTACATCACAGCTCC +
Preference number: 2 (lower is better)
Translates to: PSQKATTDHSVEIKR*WRAMLQYLQLHHSS
Trigger: GGAGCTGTGATGTAGTTGTAGATATTGGAGCATGGCTCTCCACAATCTTTTAATTTCTACACTGTGATCAGTTGTGGCTTTCTGTGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCATATACAGCTGGGCCTaGAGGGAGGAAAATAAGGGG +
Preference number: 2 (lower is better)
Translates to: NFPSKWSEETSWSSHSNIIYSWA*REENKG
Trigger: CCCCTTATTTTCCTCCCTCCAGGCCCAGCTGTATAT...GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATAGAAGCATATACAGCTaGGCCTGGAGGGAGGAAAAT +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENRSIYS*AWREEN
Trigger: ATTTTCCTCCCTCCAGGCCCAGCTGTATATGCTTCT...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTGACTGTACCAGTGCCTaGCAAATAACAGAAGTGGAT +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSDCTSA*QITEVD
Trigger: ATCCACTTCTGTTATTTGCCAGGCACTGGTACAGTC...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTATGAGACTGTACCAGTaGCTGGCAAATAACAGAAGT +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSMRLYQ*LANNRS
Trigger: ACTTCTGTTATTTGCCAGGCACTGGTACAGTCTCAT...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTTACAAGGACATCCATTaGATAACTGCCAGTTGTTCC +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSYKDIH*ITASCS
Trigger: GGAACAACTGGCAGTTATCCAATGGATGTCCTTGTA...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 90 bp GTTCCTCTTCCCTTTCCTAGAGCTTTAGGTACAGGATTTGTTTTGTaGGTACATCTGTTGGGATTGGGATTCACTATTCTGCATTTTCAT +
Preference number: 2 (lower is better)
Translates to: VPLPFPRALGTGFVL*VHLLGLGFTILHFH
Trigger: ATGAAAATGCAGAATAGTGAATCCCAATCCCAACAGATGTACCAACAAAACAAATCCTGTACCTAAAGCTCTAGGAAAGGGAAGAGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATTCAAATGGCCAGCCGTaGATACACACATACATACAT +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENSNGQP*IHTYIH
Trigger: ATGTATGTATGTGTGTATTCACGGCTGGCCATTTGA...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGTCAAATGGCCAGCCGTaGATACACACATACATACAT +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKSNGQP*IHTYIH
Trigger: ATGTATGTATGTGTGTATTCACGGCTGGCCATTTGA...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATGCACAGCAAATTCTCTaGCCTCTGACTCTTAAAATG +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENAQQIL*PLTLKM
Trigger: CATTTTAAGAGTCAGAGGTCAGAGAATTTGCTGTGC...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGGGGCACAAAAATCAATaGAAAGCAGCTTTCTCACTG +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKGHKNQ*KAAFSL
Trigger: CAGTGAGAAAGCTGCTTTTCATTGATTTTTGTGCCC...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCAAGGGACATCATCCACTaGGTATTTCTTGTTCTCGCT +
Preference number: 2 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPRDIIH*VFLVLA
Trigger: AGCGAGAACAAGAAATACGCAGTGGATGATGTCCCT...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCCCTGGAGTTGTGCCATaGCTGAATATACATACACAC +
Preference number: 2 (lower is better)
Translates to: NFPSKWSEETSWSSHSNIPGVVP*LNIHTH
Trigger: GTGTGTATGTATATTCAGCCATGGCACAACTCCAGG...GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATGGCACTCGAAGAAACTaGCTCTTGATAAGGAAATCA +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENGTRRN*LLIRKS
Trigger: TGATTTCCTTATCAAGAGCCAGTTTCTTCGAGTGCC...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTCAGGATTTGTTTTGTTaGTACATCTGTTGGGATTGG +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSQDLFC*YICWDW
Trigger: CCAATCCCAACAGATGTACCAACAAAACAAATCCTG...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCACACAATATCTTTCCATaGATCCAGCCCTTCAAAGGA +
Preference number: 2 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPHNIFP*IQPFKG
Trigger: TCCTTTGAAGGGCTGGATTCATGGAAAGATATTGTG...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATCATTACCAGATCAATTaGACAGCAAATTCTCTGACC +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENHYQIN*TANSLT
Trigger: GGTCAGAGAATTTGCTGTGCAATTGATCTGGTAATG...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTGCTCAAAGCACTCATTaGACCTCAAACAATAATAGT +
Preference number: 2 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSAQSTH*TSNNNS
Trigger: ACTATTATTGTTTGAGGTGCAATGAGTGCTTTGAGC...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGAACTCGACATGTTTGTaGAGTTCATTTTTGGTCTCC +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKNSTCL*SSFLVS
Trigger: GGAGACCAAAAATGAACTCCACAAACATGTCGAGTT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 90 bp GAACACACTCCAACTATAACAACTAACTCCAGAGATTACCAGATGTaGAAAGGCAAATGTAAGAATCTTACTAACAGAAACCAAGACCAC +
Preference number: 2 (lower is better)
Translates to: EHTPTITTNSRDYQM*KGKCKNLTNRNQDH
Trigger: GTGGTCTTGGTTTCTGTTAGTAAGATTCTTACATTTGCCTTTCAACATCTGGTAATCTCTGGAGTTAGTTGTTATAGTTGGAGTGTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGCTCCACGAAAATGTGTaGATTGATAATCAAGTAGCT +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKLHENV*IDNQVA
Trigger: AGCTACTTGATTATCAATGCACACATTTTCGTGGAG...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATTGGGATTCACTATTCTaGATTTTCATTGGTCATGGT +
Preference number: 2 (lower is better)
Translates to: QKLERTQISLNRRMDTENWDSLF*IFIGHG
Trigger: ACCATGACCAATGAAAATGCAGAATAGTGAATCCCA...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGAATAACAGAAGTGGATaGTCACAGTCATCTATGAGA +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKNNRSG*SQSSMR
Trigger: TCTCATAGATGACTGTGAGCATCCACTTCTGTTATT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCAATCAGCTGTTGTTCATaGGTAGGAAACCATTTCACT +
Preference number: 2 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPISCCS*VGNHFT
Trigger: AGTGAAATGGTTTCCTACCCATGAACAACAGCTGAT...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CCA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGAATTTTCCAAGCAAATaGTCTGAAGAAACAAGCTGG +
Preference number: 2 (lower is better)
Translates to: NTAKEVEALKELQENTAKNFPSK*SEETSW
Trigger: CCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGAGCTCTAAGGTAGGTTaGGCCGCAATTTTTAATAGT +
Preference number: 2 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMSSKVG*AAIFNS
Trigger: ACTATTAAAAATTGCGGCGCAACCTACCTTAGAGCT...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGTATCTATGCTGCAAATaGAATGGCAGCCACATTCAT +
Preference number: 2 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMYLCCK*NGSHIH
Trigger: ATGAATGTGGCTGCCATTGCATTTGCAGCATAGATA...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR TCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGGGAACAAAATACCCATaGAAAGAGTTACAGAGACAA +
Preference number: 2 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMGTKYP*KELQRQ
Trigger: TTGTCTCTGTAACTCTTTTCATGGGTATTTTGTTCC...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR GCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGAATAACAGAAGTGGATaGTCACAGTCATCTATGAGA +
Preference number: 2 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMNNRSG*SQSSMR
Trigger: TCTCATAGATGACTGTGAGCATCCACTTCTGTTATT...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp GGAGGCACTGCAAAACTTAGCTCCCGAGCTATCGACTaGGATGGCGCCCACACTCCCAGCATGCCCTTGGCA +
Preference number: 3 (lower is better)
Translates to: GGTAKLSSRAID*DGAHTPSMPLA
Trigger: TGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGTCGATAGCTCGGGAGCTAAGTTTTGCAGTGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp CACAGCTTCTGGGACAGGCAGAAGCAACACAGCTTCTaGGACAGACCCCGTTTCGGGCTCCAGACATCTGGG +
Preference number: 3 (lower is better)
Translates to: HSFWDRQKQHSF*DRPRFGLQTSG
Trigger: CCCAGATGTCTGGAGCCCGAAACGGGGTCTGTCCCAGAAGCTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCTCCAGTTCCGTGTGTTaGACCAAGGGCACTCGAAGA +
Preference number: 3 (lower is better)
Translates to: KRCPPGRALTARAGEGAISSSVC*TKGTRR
Trigger: TCTTCGAGTGCCCTTGGTCAAACACACGGAACTGGA...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCCTGCAAGAGGAGAGCTaGCCTGCAGAGAGTAATCTG +
Preference number: 3 (lower is better)
Translates to: KRCPPGRALTARAGEGAILQEES*PAESNL
Trigger: CAGATTACTCTCTGCAGGCAAGCTCTCCTCTTGCAG...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp TTCAGCCAGGAGGCAGATCTGAATGCCAGACCTCTGTaGACCTTACCTGCAAGAGGAGAGCTTGCCTGCAGA +
Preference number: 3 (lower is better)
Translates to: FSQEADLNARPL*TLPARGELACR
Trigger: TCTGCAGGCAAGCTCTCCTCTTGCAGGTAAGGTGCACAGAGGTCTGGCATTCAGATCTGCCTCCTGGCTGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp CACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTaGGACAGACCCTGTTTCCAGCTCCAGACATCCAGG +
Preference number: 3 (lower is better)
Translates to: HSFWDRQKQHNF*DRPCFQLQTSR
Trigger: CCTGGATGTCTGGAGCTGGAAACAGGGTCTGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 72 bp TTGTCCACCCAGGAGGGCTCTGACCGCCAAAGCAGGTaGGAGAGTCATCTTGTGTCCCTCATTCCTAAGAGA +
Preference number: 3 (lower is better)
Translates to: LSTQEGSDRQSR*ESHLVSLIPKR
Trigger: TCTCTTAGGAATGAGGGACACAAGATGACTCTCTCACCTGCTTTGGCGGTCAGAGCCCTCCTGGGTGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp TCGGACCTTCATCTTCAGCCAGGAGGCAGATCTGAATaGCAGACCTCTGTGCACCTTACCTGCAAGAGGAGA +
Preference number: 3 (lower is better)
Translates to: SDLHLQPGGRSE*QTSVHLTCKRR
Trigger: TCTCCTCTTGCAGGTAAGGTGCACAGAGGTCTGGCATTCAGATCTGCCTCCTGGCTGAAGATGAAGGTCCGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp CCTAAGAGACCAGTCTGTGCAGGTGAGCATGCAGACTaGAGAAGCAACACCTCTTCTGGGAAAGGCCCTCTT +
Preference number: 3 (lower is better)
Translates to: PKRPVCAGEHAD*RSNTSSGKGPL
Trigger: AAGAGGGCCTTTCCCAGAAGAGGTGTTGCTTCTGCAGTCTGCATGCTCACCTGCACAGACTGGTCTCTTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACAACTCCCAGCATGCCCTaGGCAGCAGTGCAGAGCTTT +
Preference number: 3 (lower is better)
Translates to: SNLTTETQERAGLQGLLTTPSMP*AAVQSF
Trigger: AAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGT...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCAGAGCCTTACAGCTTCTaGCATCCCATAGCTTCACAA +
Preference number: 3 (lower is better)
Translates to: GPPMEKLEKVPEELKGSAEPYSF*HPIASQ
Trigger: TTGTGAAGCTATGGGATGCAAGAAGCTGTAAGGCTC...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 72 bp ACCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTAATCTaGCCACTGAAACTCAGGAGAGAGCTGGACTCCAAG +
Preference number: 3 (lower is better)
Translates to: TCKRRACLQRVI*PLKLRRELDSK
Trigger: CTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACTCTCTGCAGGCAAGCTCTCCTCTTGCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp ATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTaGATACCCAAACACACCCGAAAAGCAAGACTCAGA +
Preference number: 3 (lower is better)
Translates to: IIRTQHSHLSQS*IPKHTRKARLR
Trigger: TCTGAGTCTTGCTTTTCGGGTGTGTTTGGGTATCCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCTTGTGGAGTTCATTTTaGGTCTCCAGCAACTTATTG +
Preference number: 3 (lower is better)
Translates to: KRCPPGRALTARAGEGAILWSSF*VSSNLL
Trigger: CAATAAGTTGCTGGAGACCAAAAATGAACTCCACAA...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCAACTCCCAGCATGCCCTaGGCAGCAGTGCAGAGCTTT +
Preference number: 3 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPTPSMP*AAVQSF
Trigger: AAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGT...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGTAACACCACAGCAGCGGCAGGGATaGAGAAAGGGACATCATCCA +
Preference number: 3 (lower is better)
Translates to: REAPWYCKLYMPQYRVTPQQRQG*RKGHHP
Trigger: TGGATGATGTCCCTTTCTCAATCCCTGCCGCTGCTG...TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCAACATTACCAGATCAATaGCACAGCAAATTCTCTGAC +
Preference number: 3 (lower is better)
Translates to: GPPMEKLEKVPEELKGSATLPDQ*HSKFSD
Trigger: GTCAGAGAATTTGCTGTGCAATTGATCTGGTAATGT...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGAAACAGGTAATGGAGTaGAACAAAACCATCCAAGAT +
Preference number: 3 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWKQVME*NKTIQD
Trigger: ATCTTGGATGGTTTTGTTCAACTCCATTACCTGTTT...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp AGACTGTACCAGTGCCTGGCAAATAACAGAAGTGGATaGTCACAGTCATCTATGAGATGGAACACAGGGCCC +
Preference number: 3 (lower is better)
Translates to: RLYQCLANNRSG*SQSSMRWNTGP
Trigger: GGGCCCTGTGTTCCATCTCATAGATGACTGTGAGCATCCACTTCTGTTATTTGCCAGGCACTGGTACAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp GTTACAGAGACAAAGTTTGGAGCTAAGACGAAAGGATaGACCATCCAGAGACTATCCCACCCAGGGATCCAT +
Preference number: 3 (lower is better)
Translates to: VTETKFGAKTKG*TIQRLSHPGIH
Trigger: ATGGATCCCTGGGTGGGATAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGGGAAAAGGATACCAATaGTTTCCATTACAACTGGCT +
Preference number: 3 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEEGKGYQ*FPLQLA
Trigger: AGCCAGTTGTAATGGAAACAATTGGTATCCTTTTCC...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACATCACCAAGGGTGTTCTaGTTAGTCCCAATTGTTCTG +
Preference number: 3 (lower is better)
Translates to: THLREKDRHNLRVKGWKTSPRVF*LVPIVL
Trigger: CAGAACAATTGGGACTAACAAGAACACCCTTGGTGA...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp AGTCAGCCATCATTGAGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACAGGGTAACACCA +
Preference number: 3 (lower is better)
Translates to: SQPSLRREAPWY*KLYMPQYRVTP
Trigger: TGGTGTTACCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATTTTTTCTTGGACGATTaGTGGCTTCTTCCATTTCAT +
Preference number: 3 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHFFLDD*WLLPFH
Trigger: ATGAAATGGAAGAAGCCACAAATCGTCCAAGAAAAA...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp AATAACAGAAGTGGATGCTCACAGTCATCTATGAGATaGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAA +
Preference number: 3 (lower is better)
Translates to: NNRSGCSQSSMR*NTGPPMEKLEK
Trigger: TTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCATAGATGACTGTGAGCATCCACTTCTGTTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ATGAATTTGAAAGGGAGCAAGAAGAAGCATATACAGCTGGGCCTGGAGGGAGGATTGTGGAGTTCATTTTaGGTCTCCAGCAACTTATTG +
Preference number: 3 (lower is better)
Translates to: MNLKGSKKKHIQLGLEGGLWSSF*VSSNLL
Trigger: CAATAAGTTGCTGGAGACCAAAAATGAACTCCACAA...TCCTCCCTCCAGGCCCAGCTGTATATGCTTCTTCTTGCTCCCTTTCAAATTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACAACAGGATTTGTTTTGTaGGTACATCTGTTGGGATTG +
Preference number: 3 (lower is better)
Translates to: THLREKDRHNLRVKGWKTTGFVL*VHLLGL
Trigger: CAATCCCAACAGATGTACCAACAAAACAAATCCTGT...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp AAATACACTGGCTACACAAACAGGGCCCAACATTTTTaGTGTTTACAGGAAACCCACCTCAGGGAAAAAGAC +
Preference number: 3 (lower is better)
Translates to: KYTGYTNRAQHF*CLQETHLREKD
Trigger: GTCTTTTTCCCTGAGGTGGGTTTCCTGTAAACAGCAAAAATGTTGGGCCCTGTTTGTGTAGCCAGTGTATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGCAGCAGCGGCAGGGATaGAGAAAGGGACATCATCCA +
Preference number: 3 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMQQRQG*RKGHHP
Trigger: TGGATGATGTCCCTTTCTCAATCCCTGCCGCTGCTG...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTGAGCCTTACAGCTTCTaGCATCCCATAGCTTCACAA +
Preference number: 3 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSEPYSF*HPIASQ
Trigger: TTGTGAAGCTATGGGATGCAAGAAGCTGTAAGGCTC...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 72 bp GCATATGTATCAGAAGATGGCCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATA +
Preference number: 3 (lower is better)
Translates to: AYVSEDGLVSHH*EERPLGIANFI
Trigger: TATAAAGTTTGCAATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCTTCTGATACATATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTAGAGGAGCCATGAATTaGAAAGGGAGCAAGAAGAAG +
Preference number: 3 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSRGAMN*KGSKKK
Trigger: CTTCTTCTTGCTCCCTTTCAAATTCATGGCTCCTCT...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 72 bp ACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTaGAGGGAACCTAATATAGCTGTCTCAAATGAGACT +
Preference number: 3 (lower is better)
Translates to: TQTLLHMPARFC*REPNIAVSNET
Trigger: AGTCTCATTTGAGACAGCTATATTAGGTTCCCTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCTCACCAAGGGTGTTCTaGTTAGTCCCAATTGTTCTG +
Preference number: 3 (lower is better)
Translates to: NFPSKWSEETSWSSHSNISPRVF*LVPIVL
Trigger: CAGAACAATTGGGACTAACAAGAACACCCTTGGTGA...GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCAGAGGAGCCATGAATTaGAAAGGGAGCAAGAAGAAG +
Preference number: 3 (lower is better)
Translates to: NFPSKWSEETSWSSHSNIRGAMN*KGSKKK
Trigger: CTTCTTCTTGCTCCCTTTCAAATTCATGGCTCCTCT...GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp ATGTTCATAGCAGCCTTCTTTATAATAGCCAGAAGCTaGAAAGAACCCAAATATCCCTCAACAGAAGAATGG +
Preference number: 3 (lower is better)
Translates to: MFIAAFFIIARS*KEPKYPSTEEW
Trigger: CCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTGGCTATTATAAAGAAGGCTGCTATGAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp GCCACAACTGATCACAGTGTAGAAATTAAAAGATTGTaGAGAGCCATGCTCCAATATCTACAACTACATCAC +
Preference number: 3 (lower is better)
Translates to: ATTDHSVEIKRL*RAMLQYLQLHH
Trigger: GTGATGTAGTTGTAGATATTGGAGCATGGCTCTCCACAATCTTTTAATTTCTACACTGTGATCAGTTGTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGACATTACCAGATCAATaGCACAGCAAATTCTCTGAC +
Preference number: 3 (lower is better)
Translates to: NTAKEVEALKELQENTAKTLPDQ*HSKFSD
Trigger: GTCAGAGAATTTGCTGTGCAATTGATCTGGTAATGT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AACACTGCTAAAGAGGTAGAAGCCCTTAAAGAATTACAGGAAAACACTGCTAAGAATACCCAGAAGATGTaGCAACTGGTCATAAGAACA +
Preference number: 3 (lower is better)
Translates to: NTAKEVEALKELQENTAKNTQKM*QLVIRT
Trigger: TGTTCTTATGACCAGTTGCAACATCTTCTGGGTATT...CTTAGCAGTGTTTTCCTGTAATTCTTTAAGGGCTTCTACCTCTTTAGCAGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR TCA 72 bp GAACACCCAAGATACAATTTGCAAAACACAAGACAATaGAGAAGAGGGAAGACCAATGGGAGGATACTTTAT +
Preference number: 3 (lower is better)
Translates to: EHPRYNLQNTRQ*RRGKTNGRILY
Trigger: ATAAAGTATCCTCCCATTGGTCTTCCCTCTTCTTCATTGTCTTGTGTTTTGCAAATTGTATCTTGGGTGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR GCA 72 bp TACCCAGAAGATGTTGCAACTGGTCATAAGAACACATaGTCCACTATGTTCATAGCAGCCTTCTTTATAATA +
Preference number: 3 (lower is better)
Translates to: YPEDVATGHKNT*STMFIAAFFII
Trigger: TATTATAAAGAAGGCTGCTATGAACATAGTGGAGCATGTGTTCTTATGACCAGTTGCAACATCTTCTGGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp CCTATGGAAAAGGATACCAATTGTTTCCATTACAACTaGCTATTCAATATCAAATGGCCAGCCGTGAATACA +
Preference number: 3 (lower is better)
Translates to: PMEKDTNCFHYN*LFNIKWPAVNT
Trigger: TGTATTCACGGCTGGCCATTTGATATTGAATAGCCAGTTGTAATGGAAACAATTGGTATCCTTTTCCATAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CCA 72 bp GTACAGGATTTGTTTTGTTGGTACATCTGTTGGGATTaGGATTCACTATTCTGCATTTTCATTGGTCATGGT +
Preference number: 3 (lower is better)
Translates to: VQDLFCWYICWD*DSLFCIFIGHG
Trigger: ACCATGACCAATGAAAATGCAGAATAGTGAATCCCAATCCCAACAGATGTACCAACAAAACAAATCCTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCATTTTTCTTGGACGATTaGTGGCTTCTTCCATTTCAT +
Preference number: 3 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPFFLDD*WLLPFH
Trigger: ATGAAATGGAAGAAGCCACAAATCGTCCAAGAAAAA...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR-3UTR CAA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGGGAAAAGGATACCAATaGTTTCCATTACAACTGGCT +
Preference number: 3 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMGKGYQ*FPLQLA
Trigger: AGCCAGTTGTAATGGAAACAATTGGTATCCTTTTCC...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR GCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCTTAGAACAGAGGTGGTaGAGATGGACAGACCCCGAC +
Preference number: 4 (lower is better)
Translates to: KRCPPGRALTARAGEGAILEQRW*RWTDPD
Trigger: GTCGGGGTCTGTCCATCTGCACCACCTCTGTTCTAA...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp AGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCTaGAGTACCAGGTCCCTCAGAGACCAGTCTGCACAG +
Preference number: 4 (lower is better)
Translates to: RALTARAGEGAI*STRSLRDQSAQ
Trigger: CTGTGCAGACTGGTCTCTGAGGGACCTGGTACTCAAGATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp ACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGAGCTTTCCCGACTGACTCTGAGTaGAAAGAAAACTGCCTTACA +
Preference number: 4 (lower is better)
Translates to: TAMAPTLPACPWQQCRAFPTDSE*KENCLT
Trigger: TGTAAGGCAGTTTTCTTTTCACTCAGAGTCAGTCGG...GAAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp ACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGAGCTTTCCCATGTAGAGAGTCTTaGCTTAAGCCAGGAGACAAA +
Preference number: 4 (lower is better)
Translates to: TAMAPTLPACPWQQCRAFPCRES*LKPGDK
Trigger: TTTGTCTCCTGGCTTAAGCCAAGACTCTCTACATGG...GAAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCAGAAAGGTTTGGGCTGTaGAGATGCTGGGCTAACTTG +
Preference number: 4 (lower is better)
Translates to: GPPMEKLEKVPEELKGSAERFGL*RCWANL
Trigger: CAAGTTAGCCCAGCATCTCCACAGCCCAAACCTTTC...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp ACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGAGCTTTCGACAAAACTGGAATATaGGAAAGATCTGGAAGATGG +
Preference number: 4 (lower is better)
Translates to: TAMAPTLPACPWQQCRAFDKTGI*ERSGRW
Trigger: CCATCTTCCAGATCTTTCTCATATTCCAGTTTTGTC...GAAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp ACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGAGCTTTCCCTTATTATTCTTCATaGGTAGAAAAGGGCAGATGG +
Preference number: 4 (lower is better)
Translates to: TAMAPTLPACPWQQCRAFPYYSS*VEKGRW
Trigger: CCATCTGCCCTTTTCTACTCATGAAGAATAATAAGG...GAAAGCTCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR GCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGGATGCTGGGCTAACTTaGGGTGTCTGTATAGGAAAA +
Preference number: 4 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWDAGLT*GVCIGK
Trigger: TTTTCCTATACAGACACCGCAAGTTAGCCCAGCATC...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp CCAGACCTCTGTGCACCTTACCTGCAAGAGGAGAGCTaGCCTGCAGAGAGTAATCTGACCACTGAAACTCAG +
Preference number: 4 (lower is better)
Translates to: PDLCAPYLQEES*PAESNLTTETQ
Trigger: CTGAGTTTCAGTGGTCAGATTACTCTCTGCAGGCAAGCTCTCCTCTTGCAGGTAAGGTGCACAGAGGTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR GCA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATTTTGGGCTGTGGAGATaGTGGGCTAACTTGCGGTGT +
Preference number: 4 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHFGLWR*WANLRC
Trigger: ACACCGCAAGTTAGCCCAGCATCTCCACAGCCCAAA...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp AGTAATCTGACCACTGAAACTCAGGAGAGAGCTGGACTCCAAGGACTGCTGACACGCTCAGGAGATGACTaGGAGGAAAGGTTTGGGCTG +
Preference number: 4 (lower is better)
Translates to: SNLTTETQERAGLQGLLTRSGDD*EERFGL
Trigger: CAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCG...TGTCAGCAGTCCTTGGAGTCCAGCTCTCTCCTGAGTTTCAGTGGTCAGATTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp AAAAGGTGCCCGCCTGGTAGGGCTCTGACTGCCAGAGCAGGTGAGGGAGCAATCAATATGAGAAAGATCTaGAAGATGGTGTCACTTGGA +
Preference number: 4 (lower is better)
Translates to: KRCPPGRALTARAGEGAINMRKI*KMVSLG
Trigger: TCCAAGTGACACCATCTTCCAGATCTTTCTCATATT...GATTGCTCCCTCACCTGCTCTGGCAGTCAGAGCCCTACCAGGCGGGCACCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGCAACGAGAGTCATATTaGTTTTGGCTACTACCAAGT +
Preference number: 4 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWQRESY*FWLLPS
Trigger: ACTTGGTAGTAGCCAAAACCAATATGACTCTCGTTG...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp CCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGGTAGAAAAGGGCAGATaGTTGGGTAGCTTGTTATTA +
Preference number: 4 (lower is better)
Translates to: PRPLTIIRTQHSHLSQSWVEKGR*LGSLLL
Trigger: TAATAACAAGCTACCCAACCATCTGCCCTTTTCTAC...CCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR GCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACATTAGAACAGAGGTGGTaGAGATGGACAGACCCCGAC +
Preference number: 4 (lower is better)
Translates to: THLREKDRHNLRVKGWKTLEQRW*RWTDPD
Trigger: GTCGGGGTCTGTCCATCTGCACCACCTCTGTTCTAA...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp GGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGCTAAAGGGGTCTGCACAACGAGAGTCATATTaGTTTTGGCTACTACCAAGT +
Preference number: 4 (lower is better)
Translates to: GPPMEKLEKVPEELKGSAQRESY*FWLLPS
Trigger: ACTTGGTAGTAGCCAAAACCAATATGACTCTCGTTG...TGCAGACCCCTTTAGCTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp TCCCACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATCCTTATTATTCTTCATaGGTAGAAAAGGGCAGATGG +
Preference number: 4 (lower is better)
Translates to: SHPGIHPIISHQTQTLLHPYYSS*VEKGRW
Trigger: CCATCTGCCCTTTTCTACTCATGAAGAATAATAAGG...ATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp ATGAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCGAGGAGACACCAAGACAAAACTaGAATATGAGAAAGATCTGG +
Preference number: 4 (lower is better)
Translates to: MRWNTGPPMEKLEKVPEETPRQN*NMRKIW
Trigger: CCAGATCTTTCTCATATTCCAGTTTTGTCTTGGTGT...CTCCTCGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACAACACCAAGACAAAACTaGAATATGAGAAAGATCTGG +
Preference number: 4 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTTPRQN*NMRKIW
Trigger: CCAGATCTTTCTCATATTCCAGTTTTGTCTTGGTGT...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp GCTATGGTACAAGGACATCCATTGGATAACTGCCAGTaGTTCCACATAAGAGTCCCACCCACAGCAGTATTT +
Preference number: 4 (lower is better)
Translates to: AMVQGHPLDNCQ*FHIRVPPTAVF
Trigger: AAATACTGCTGTGGGTGGGACTCTTATGTGGAACAACTGGCAGTTATCCAATGGATGTCCTTGTACCATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp ACCCACCTCAGGGAAAAAGACAGACACAACCTGAGAGTGAAAGGCTGGAAAACAGACAAAACTGGAATATaGGAAAGATCTGGAAGATGG +
Preference number: 4 (lower is better)
Translates to: THLREKDRHNLRVKGWKTDKTGI*ERSGRW
Trigger: CCATCTTCCAGATCTTTCTCATATTCCAGTTTTGTC...TGTTTTCCAGCCTTTCACTCTCAGGTTGTGTCTGTCTTTTTCCCTGAGGTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCACGCTCAGGAGATGACTaGGAGGAAAGGTTTGGGCTG +
Preference number: 4 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPRSGDD*EERFGL
Trigger: CAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCG...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp CAAATACACTGGCTACACAAACAGGGCCCAACATTTTaGCTGTTTACAGGAAACCCACCTCAGGGAAAAAGA +
Preference number: 4 (lower is better)
Translates to: QIHWLHKQGPTF*LFTGNPPQGKR
Trigger: TCTTTTTCCCTGAGGTGGGTTTCCTGTAAACAGCAAAAATGTTGGGCCCTGTTTGTGTAGCCAGTGTATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp TATCAACCTGTGAGAGTATATCCGAGATGTGAGAGGGAAGGGTTTGAGGGAAGGAATATGAGAAAGATCTaGAAGATGGTGTCACTTGGA +
Preference number: 4 (lower is better)
Translates to: YQPVRVYPRCEREGFEGRNMRKI*KMVSLG
Trigger: TCCAAGTGACACCATCTTCCAGATCTTTCTCATATT...CCTTCCCTCAAACCCTTCCCTCTCACATCTCGGATATACTCTCACAGGTTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCATGCTTAGAACAGAGGTaGTGCAGATGGACAGACCCC +
Preference number: 4 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPCLEQR*CRWTDP
Trigger: GGGGTCTGTCCATCTGCACCACCTCTGTTCTAAGCA...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp TGCATATGTATCAGAAGATGGCCTAGTCAGCCATCATaGAGAAGAGAGGCCCCTTGGTATTGCAAACTTTAT +
Preference number: 4 (lower is better)
Translates to: CICIRRWPSQPS*RREAPWYCKLY
Trigger: ATAAAGTTTGCAATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCTTCTGATACATATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTCCGACTGACTCTGAGTaGAAAGAAAACTGCCTTACA +
Preference number: 4 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSPTDSE*KENCLT
Trigger: TGTAAGGCAGTTTTCTTTTCACTCAGAGTCAGTCGG...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp ACTATACCCAGCAAAACTCTCAATTACCATAGATGGAGAAACCAACATATTCCAGAAAGGTTTGGGCTGTaGAGATGCTGGGCTAACTTG +
Preference number: 4 (lower is better)
Translates to: TIPSKTLNYHRWRNQHIPERFGL*RCWANL
Trigger: CAAGTTAGCCCAGCATCTCCACAGCCCAAACCTTTC...TGGAATATGTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR TCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATGGCTGGCCCACATCATaGCAGACATATAGAAGAAAT +
Preference number: 4 (lower is better)
Translates to: QKLERTQISLNRRMDTENGWPTS*QTYRRN
Trigger: ATTTCTTCTATATGTCTGTCATGATGTGGGCCAGCC...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR GCA 90 bp CAGAAGCTGGAAAGAACCCAAATATCCCTCAACAGAAGAATGGATACAGAAAATGATGCTGGGCTAACTTaGGGTGTCTGTATAGGAAAA +
Preference number: 4 (lower is better)
Translates to: QKLERTQISLNRRMDTENDAGLT*GVCIGK
Trigger: TTTTCCTATACAGACACCGCAAGTTAGCCCAGCATC...ATTTTCTGTATCCATTCTTCTGTTGAGGGATATTTGGGTTCTTTCCAGCTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp AAATCAATGAAAAGCAGCTTTCTCACTGGAAAATCTCTCTTGGATATAGACATGCCATGTAGAGAGTCTTaGCTTAAGCCAGGAGACAAA +
Preference number: 4 (lower is better)
Translates to: KSMKSSFLTGKSLLDIDMPCRES*LKPGDK
Trigger: TTTGTCTCCTGGCTTAAGCCAAGACTCTCTACATGG...CATGTCTATATCCAAGAGAGATTTTCCAGTGAGAAAGCTGCTTTTCATTGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CCA 90 bp AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGTAGAAAAGGGCAGATaGTTGGGTAGCTTGTTATTA +
Preference number: 4 (lower is better)
Translates to: NFPSKWSEETSWSSHSNIVEKGR*LGSLLL
Trigger: TAATAACAAGCTACCCAACCATCTGCCCTTTTCTAC...GATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp AAAGCCACAACTGATCACAGTGTAGAAATTAAAAGATaGTGGAGAGCCATGCTCCAATATCTACAACTACAT +
Preference number: 4 (lower is better)
Translates to: KATTDHSVEIKR*WRAMLQYLQLH
Trigger: ATGTAGTTGTAGATATTGGAGCATGGCTCTCCACAATCTTTTAATTTCTACACTGTGATCAGTTGTGGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
3UTR CAA 72 bp AGGAGAAATGGTCTTCCCTATGGAAAAGGATACCAATaGTTTCCATTACAACTGGCTATTCAATATCAAATG +
Preference number: 4 (lower is better)
Translates to: RRNGLPYGKGYQ*FPLQLAIQYQM
Trigger: CATTTGATATTGAATAGCCAGTTGTAATGGAAACAATTGGTATCCTTTTCCATAGGGAAGACCATTTCTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CAA 90 bp CTATCGACTGCGATGGCGCCCACACTCCCAGCATGCCCTTGGCAGCAGTGCAGAAGAGTCATATTGGTTTaGGCTACTACCAAGTCAATC +
Preference number: 5 (lower is better)
Translates to: LSTAMAPTLPACPWQQCRRVILV*ATTKSI
Trigger: GATTGACTTGGTAGTAGCCAAAACCAATATGACTCT...TCTGCACTGCTGCCAAGGGCATGCTGGGAGTGTGGGCGCCATCGCAGTCGATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CCA 90 bp GTGGCTTTGCGCTCAGGAGATGACTGGGAGGAAAGGTTTGGGCTGTaGAGATGCTGGGCTAACTTGCGGTGTCTGTATAGGAAAATAACC +
Preference number: 5 (lower is better)
Translates to: VALRSGDDWEERFGL*RCWANLRCLYRKIT
Trigger: GGTTATTTTCCTATACAGACACCGCAAGTTAGCCCAGCATCTCCACAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CCA 90 bp AATAAGTTAACACAAAGCAGCTCACCAGAAACAGGATGCTGTGAGTaGCTTTGCGCTCAGGAGATGACTGGGAGGAAAGGTTTGGGCTGT +
Preference number: 5 (lower is better)
Translates to: NKLTQSSSPETGCCE*LCAQEMTGRKGLGC
Trigger: ACAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGTTAACTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS GCA 90 bp TGTTCAACCAATAAGTTAACACAAAGCAGCTCACCAGAAACAGGATaGTGTGAGTGGCTTTGCGCTCAGGAGATGACTGGGAGGAAAGGT +
Preference number: 5 (lower is better)
Translates to: CSTNKLTQSSSPETG*CEWLCAQEMTGRKG
Trigger: ACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGTTAACTTATTGGTTGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CAA 90 bp TGCAGAAGTGACACAGCTTCTGGGACAGGCAGAAGCAACACAACTTCTGGGACAGAAAAGGGCAGATGGTaGGGTAGCTTGTTATTAAAA +
Preference number: 5 (lower is better)
Translates to: CRSDTASGTGRSNTTSGTEKGRW*GSLLLK
Trigger: TTTTAATAACAAGCTACCCAACCATCTGCCCTTTTC...TGTCCCAGAAGTTGTGTTGCTTCTGCCTGTCCCAGAAGCTGTGTCACTTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CAA 90 bp ATGAATTTGAAAGGGAGCAAGAAGAAGCATATACAGCTGGGCCTGGAGGGAGGAAGAGTCATATTGGTTTaGGCTACTACCAAGTCAATC +
Preference number: 5 (lower is better)
Translates to: MNLKGSKKKHIQLGLEGGRVILV*ATTKSI
Trigger: GATTGACTTGGTAGTAGCCAAAACCAATATGACTCT...TCCTCCCTCCAGGCCCAGCTGTATATGCTTCTTCTTGCTCCCTTTCAAATTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS-3UTR CAA 90 bp ACTAGGAGGGGCACTTCAATCTCATTAAAGGCAAAATCTACCAAGATGAACTCTGAAAAGGGCAGATGGTaGGGTAGCTTGTTATTAAAA +
Preference number: 5 (lower is better)
Translates to: TRRGTSISLKAKSTKMNSEKGRW*GSLLLK
Trigger: TTTTAATAACAAGCTACCCAACCATCTGCCCTTTTC...AGAGTTCATCTTGGTAGATTTTGCCTTTAATGAGATTGAAGTGCCCCTCCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS GCA 72 bp AGCAGCTCACCAGAAACAGGATGCTGTGAGTGGCTTTaGGCTCAGGAGATGACTGGGAGGAAAGGTTTGGGC +
Preference number: 6 (lower is better)
Translates to: SSSPETGCCEWL*AQEMTGRKGLG
Trigger: GCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CCA 72 bp CGCTCAGGAGATGACTGGGAGGAAAGGTTTGGGCTGTaGAGATGCTGGGCTAACTTGCGGTGTCTGTATAGG +
Preference number: 6 (lower is better)
Translates to: RSGDDWEERFGL*RCWANLRCLYR
Trigger: CCTATACAGACACCGCAAGTTAGCCCAGCATCTCCACAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS TCA 72 bp AAACAGGATGCTGTGAGTGGCTTTGCGCTCAGGAGATaGCTGGGAGGAAAGGTTTGGGCTGTGGAGATGCTG +
Preference number: 6 (lower is better)
Translates to: KQDAVSGFALRR*LGGKVWAVEML
Trigger: CAGCATCTCCACAGCCCAAACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CCA 72 bp ACACAAAGCAGCTCACCAGAAACAGGATGCTGTGAGTaGCTTTGCGCTCAGGAGATGACTGGGAGGAAAGGT +
Preference number: 6 (lower is better)
Translates to: TQSSSPETGCCE*LCAQEMTGRKG
Trigger: ACCTTTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS TCA 72 bp GGTGGTGCAGATGGACAGACCCCGACTGACTCTGAGTaGAAAGAAAACTGCCTTACAACCAACATCGTCCAG +
Preference number: 6 (lower is better)
Translates to: GGADGQTPTDSE*KENCLTTNIVQ
Trigger: CTGGACGATGTTGGTTGTAAGGCAGTTTTCTTTTCACTCAGAGTCAGTCGGGGTCTGTCCATCTGCACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS TCA 72 bp GTTAACACAAAGCAGCTCACCAGAAACAGGATGCTGTaGGTGGCTTTGCGCTCAGGAGATGACTGGGAGGAA +
Preference number: 6 (lower is better)
Translates to: VNTKQLTRNRML*VALRSGDDWEE
Trigger: TTCCTCCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGTTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CCA 72 bp GATGACTGGGAGGAAAGGTTTGGGCTGTGGAGATGCTaGGCTAACTTGCGGTGTCTGTATAGGAAAATAACC +
Preference number: 6 (lower is better)
Translates to: DDWEERFGLWRC*ANLRCLYRKIT
Trigger: GGTTATTTTCCTATACAGACACCGCAAGTTAGCCCAGCATCTCCACAGCCCAAACCTTTCCTCCCAGTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS GCA 72 bp AATAAGTTAACACAAAGCAGCTCACCAGAAACAGGATaGTGTGAGTGGCTTTGCGCTCAGGAGATGACTGGG +
Preference number: 6 (lower is better)
Translates to: NKLTQSSSPETG*CEWLCAQEMTG
Trigger: CCCAGTCATCTCCTGAGCGCAAAGCCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGTTAACTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CAA 90 bp CATGTAGAGAGTCTTGGCTTAAGCCAGGAGACAAACGTAGGATTATaGGGAGTGATGGTGATGACTTGGGATGTGCTTAGAACAGAGGTG +
Preference number: 6 (lower is better)
Translates to: HVESLGLSQETNVGL*GVMVMTWDVLRTEV
Trigger: CACCTCTGTTCTAAGCACATCCCAAGTCATCACCATCACTCCCAATAATCCTACGTTTGTCTCCTGGCTTAAGCCAAGACTCTCTACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS CAA 72 bp AGTCTTGGCTTAAGCCAGGAGACAAACGTAGGATTATaGGGAGTGATGGTGATGACTTGGGATGTGCTTAGA +
Preference number: 6 (lower is better)
Translates to: SLGLSQETNVGL*GVMVMTWDVLR
Trigger: TCTAAGCACATCCCAAGTCATCACCATCACTCCCAATAATCCTACGTTTGTCTCCTGGCTTAAGCCAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2
CDS TCA 72 bp TTGTTTCCCAAATTTCTTTCTTTGACAGTAACCATGTaGAAATCCACGGCCAACGAGAGTCATATTGGTTTT +
Preference number: 6 (lower is better)
Translates to: LFPKFLSLTVTM*KSTANESHIGF
Trigger: AAAACCAATATGACTCTCGTTGGCCGTGGATTTTCACATGGTTACTGTCAAAGAAAGAAATTTGGGAAACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000171783.2
ENSMUST00000236472.2
ENSMUST00000237109.2