Pregenerated sensors for VMN1R85 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070817Ensembl transcript IDs: ENSMUST00000094829.2, ENSMUST00000209822.3, ENSMUST00000235753.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGTGTACAGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTaGAGGTTAACAAGGCCAGTTTTTATTTTACAAGCTCCAAAGTAT | + |
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Preference number: 1 (lower is better) Translates to: QVYRMCLCVFMMTLM*RLTRPVFILQAPKY Trigger: ATACTTTGGAGCTTGTAAAATAAAAACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCTGTACACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| 3UTR-3UTR CAA 90 bp | AGTGAGTTCCAAGAAAAGCCAGGGCTACCTACAGAGACCTTGCCTCAAAAATCGGGAGAGACTGGTTTGTaGATGAGAACATCTGGATTT | + |
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Preference number: 3 (lower is better) Translates to: SEFQEKPGLPTETLPQKSGETGL*MRTSGF Trigger: AAATCCAGATGTTCTCATCAACAAACCAGTCTCTCC...CGATTTTTGAGGCAAGGTCTCTGTAGGTAGCCCTGGCTTTTCTTGGAACTCACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| 3UTR-3UTR CAA 90 bp | AATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGTGGAGAGACTGGTTTGTaGATGAGAACATCTGGATTT | + |
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Preference number: 3 (lower is better) Translates to: NVSLCVYDDTYVEVNKASGETGL*MRTSGF Trigger: AAATCCAGATGTTCTCATCAACAAACCAGTCTCTCC...ACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| 3UTR CCA 72 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTaGAGGTTAACAAGGCCAGTTTTTATTTTACAAGCT | + |
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Preference number: 3 (lower is better) Translates to: RMCLCVFMMTLM*RLTRPVFILQA Trigger: AGCTTGTAAAATAAAAACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| 3UTR CCA 72 bp | TATCTATTTATCTTTGTATGTGCATGTATGTGTGTATaGCCAGGTGTACAGAATGTGTCTCTGTGTGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: YLFIFVCACMCV*PGVQNVSLCVY Trigger: ATAAACACACAGAGACACATTCTGTACACCTGGCCATACACACATACATGCACATACAAAGATAAATAGATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR TCA 90 bp | AGTGAGTTCCAAGAAAAGCCAGGGCTACCTACAGAGACCTTGCCTCAAAAATCGAGCAACAGGATTGTGTaGGTGGCTTTGTGTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SEFQEKPGLPTETLPQKSSNRIV*VALCSG Trigger: TCCAGAACACAAAGCCACTCACACAATCCTGTTGCT...CGATTTTTGAGGCAAGGTCTCTGTAGGTAGCCCTGGCTTTTCTTGGAACTCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAAGGAGAGTCTTGGGTTaGGGAGATGCTGGGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPRRVLG*GDAGLS Trigger: AGAGAGCCCAGCATCTCCGCAACCCAAGACTCTCCT...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | CAGGTGTACAGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAAGGAGAGTCTTGGGTTaGGGAGATGCTGGGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QVYRMCLCVFMMTLMWRLRRVLG*GDAGLS Trigger: AGAGAGCCCAGCATCTCCGCAACCCAAGACTCTCCT...TAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCTGTACACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAAGAGGAGGGTCACCATaGAGAGGCTGGTCCACATCA | + |
|
Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPRGGSP*RGWSTS Trigger: TGATGTGGACCAGCCTCTCCATGGTGACCCTCCTCT...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAACTGAGAGGAGAGTCTTaGGTTGCGGAGATGCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: VRILIRTLARIQEPHNFQLRGES*VAEMLG Trigger: GCCCAGCATCTCCGCAACCCAAGACTCTCCTCTCAG...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AGTGAGTTCCAAGAAAAGCCAGGGCTACCTACAGAGACCTTGCCTCAAAAATCGGTGATGGTGATGGCCTaGAATGTGCTTAGAATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SEFQEKPGLPTETLPQKSVMVMA*NVLRIE Trigger: TTCTATTCTAAGCACATTCCAGGCCATCACCATCAC...CGATTTTTGAGGCAAGGTCTCTGTAGGTAGCCCTGGCTTTTCTTGGAACTCACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAAGAGGAGGGTCACCATaGAGAGGCTGGTCCACATCA | + |
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Preference number: 4 (lower is better) Translates to: VRILIRTLARIQEPHNFQRGGSP*RGWSTS Trigger: TGATGTGGACCAGCCTCTCCATGGTGACCCTCCTCT...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGCCGAGGAAAAATCCTaGATTGGGGTACTCAACTGG | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPAEEKS*IGVLNW Trigger: CCAGTTGAGTACCCCAATCCAGGATTTTTCCTCGGC...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGATTCAAGAGCCACACAACTTTCAACATATCACACAAATCACAGGAGAGAGTGGCTTTGTGTTCTaGAGACTTCTGAGAGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: ARIQEPHNFQHITQITGESGFVF*RLLRGE Trigger: CTCTCCTCTCAGAAGTCTCCAGAACACAAAGCCACT...CTCTCCTGTGATTTGTGTGATATGTTGAAAGTTGTGTGGCTCTTGAATCCTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR TCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAAGCAACAGGATTGTGTaGGTGGCTTTGTGTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPSNRIV*VALCSG Trigger: TCCAGAACACAAAGCCACTCACACAATCCTGTTGCT...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAGCCGAGGAAAAATCCTaGATTGGGGTACTCAACTGG | + |
|
Preference number: 4 (lower is better) Translates to: VRILIRTLARIQEPHNFQAEEKS*IGVLNW Trigger: CCAGTTGAGTACCCCAATCCAGGATTTTTCCTCGGC...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | CAGGTGTACAGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAAGTGGCTTTGTGTTCTaGAGACTTCTGAGAGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QVYRMCLCVFMMTLMWRLSGFVF*RLLRGE Trigger: CTCTCCTCTCAGAAGTCTCCAGAACACAAAGCCACT...TAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCTGTACACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCATTACAGCCAGCATCATaGAGAAAACTAGGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPLQPAS*RKLGTP Trigger: TGGAGTGCCTAGTTTTCTGCATGATGCTGGCTGTAA...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | AATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGTTTACAGCCAGCATCATaGAGAAAACTAGGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: NVSLCVYDDTYVEVNKASLQPAS*RKLGTP Trigger: TGGAGTGCCTAGTTTTCTGCATGATGCTGGCTGTAA...ACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGATTCAAGAGCCACACAACTTTCAACATATCACACAAATCACAGGAGAGGTGATGGTGATGGCCTaGAATGTGCTTAGAATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ARIQEPHNFQHITQITGEVMVMA*NVLRIE Trigger: TTCTATTCTAAGCACATTCCAGGCCATCACCATCAC...CTCTCCTGTGATTTGTGTGATATGTTGAAAGTTGTGTGGCTCTTGAATCCTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGTGGAAAAATCCTGGATTaGGGTACTCAACTGGACTAC | + |
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Preference number: 4 (lower is better) Translates to: NVSLCVYDDTYVEVNKASGKILD*GTQLDY Trigger: GTAGTCCAGTTGAGTACCCCAATCCAGGATTTTTCC...ACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGTACAGGATTGTGTGAGTaGCTTTGTGTTCTGGAGACT | + |
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Preference number: 4 (lower is better) Translates to: NVSLCVYDDTYVEVNKASTGLCE*LCVLET Trigger: AGTCTCCAGAACACAAAGCCACTCACACAATCCTGT...ACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | CAGGTGTACAGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAGGATTGTGTGAGTaGCTTTGTGTTCTGGAGACT | + |
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Preference number: 4 (lower is better) Translates to: QVYRMCLCVFMMTLMWRLTGLCE*LCVLET Trigger: AGTCTCCAGAACACAAAGCCACTCACACAATCCTGT...TAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCTGTACACCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGATTCAAGAGCCACACAACTTTCAACATATCACACAAATCACAGGAGAGATTGGGGTACTCAACTaGACTACTTTCACAGTAAAC | + |
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Preference number: 4 (lower is better) Translates to: ARIQEPHNFQHITQITGEIGVLN*TTFTVN Trigger: GTTTACTGTGAAAGTAGTCCAGTTGAGTACCCCAAT...CTCTCCTGTGATTTGTGTGATATGTTGAAAGTTGTGTGGCTCTTGAATCCTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCATTGACTATCATCAGGTaGATGAAAATGGGATCGATC | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPLTIIR*MKMGSI Trigger: GATCGATCCCATTTTCATGCACCTGATGATAGTCAA...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | GCAAGGATTCAAGAGCCACACAACTTTCAACATATCACACAAATCACAGGAGAGACATTCTCAATCAGGTaGACATATATGACCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: ARIQEPHNFQHITQITGETFSIR*TYMTML Trigger: CAACATGGTCATATATGTGCACCTGATTGAGAATGT...CTCTCCTGTGATTTGTGTGATATGTTGAAAGTTGTGTGGCTCTTGAATCCTTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAATTGGGGTACTCAACTaGACTACTTTCACAGTAAAC | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPIGVLN*TTFTVN Trigger: GTTTACTGTGAAAGTAGTCCAGTTGAGTACCCCAAT...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR TCA 90 bp | AGAATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGAGAGTAGGGTAAAATaGTGCCACAATTGTGATAAT | + |
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Preference number: 4 (lower is better) Translates to: RMCLCVFMMTLMWRLTRPESRVK*CHNCDN Trigger: ATTATCACAATTGTGGCATCATTTTACCCTACTCTC...TGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR GCA 90 bp | AATGTGTCTCTGTGTGTTTATGATGACACTTATGTGGAGGTTAACAAGGCCAGTACATTCTCAATCAGGTaGACATATATGACCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: NVSLCVYDDTYVEVNKASTFSIR*TYMTML Trigger: CAACATGGTCATATATGTGCACCTGATTGAGAATGT...ACTGGCCTTGTTAACCTCCACATAAGTGTCATCATAAACACACAGAGACACATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR TCA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAGAGAGTAGGGTAAAATaGTGCCACAATTGTGATAAT | + |
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Preference number: 4 (lower is better) Translates to: VRILIRTLARIQEPHNFQESRVK*CHNCDN Trigger: ATTATCACAATTGTGGCATCATTTTACCCTACTCTC...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CCA 90 bp | AAAGCAGTTTACAAGCAACAGGATTGTGTGAGTGGCTTTGTGTTCTaGAGACTTCTGAGAGGAGAGTCTTGGGTTGCGGAGATGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: KAVYKQQDCVSGFVF*RLLRGESWVAEMLG Trigger: GCCCAGCATCTCCGCAACCCAAGACTCTCCTCTCAGAAGTCTCCAGAACACAAAGCCACTCACACAATCCTGTTGCTTGTAAACTGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAGAGGAGAGTCTTGGGTaGCGGAGATGCTGGGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: VRILIRTLARIQEPHNFQEESLG*RRCWAL Trigger: GAGAGCCCAGCATCTCCGCAACCCAAGACTCTCCTC...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | AGTGAGTTCCAAGAAAAGCCAGGGCTACCTACAGAGACCTTGCCTCAAAAATCGCTGTTAAAGCGAGCTTaGACCCAGAAGTTGAATATA | + |
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Preference number: 5 (lower is better) Translates to: SEFQEKPGLPTETLPQKSLLKRA*TQKLNI Trigger: TATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAG...CGATTTTTGAGGCAAGGTCTCTGTAGGTAGCCCTGGCTTTTCTTGGAACTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | AGTGAGTTCCAAGAAAAGCCAGGGCTACCTACAGAGACCTTGCCTCAAAAATCGACATATATGACCATGTaGATGAACCAGGAAAACAGG | + |
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Preference number: 5 (lower is better) Translates to: SEFQEKPGLPTETLPQKSTYMTM*MNQENR Trigger: CCTGTTTTCCTGGTTCATCAACATGGTCATATATGT...CGATTTTTGAGGCAAGGTCTCTGTAGGTAGCCCTGGCTTTTCTTGGAACTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CCA 90 bp | CAGAAGGACAAGGTCTCTTGTTATGATAACGCCGAGGAAAAATCCTaGATTGGGGTACTCAACTGGACTACTTTCACAGTAAACATGAGA | + |
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Preference number: 5 (lower is better) Translates to: QKDKVSCYDNAEEKS*IGVLNWTTFTVNMR Trigger: TCTCATGTTTACTGTGAAAGTAGTCCAGTTGAGTACCCCAATCCAGGATTTTTCCTCGGCGTTATCATAACAAGAGACCTTGTCCTTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CCA 90 bp | AATAAAAGAACACAAAGCAGTTTACAAGCAACAGGATTGTGTGAGTaGCTTTGTGTTCTGGAGACTTCTGAGAGGAGAGTCTTGGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: NKRTQSSLQATGLCE*LCVLETSERRVLGC Trigger: GCAACCCAAGACTCTCCTCTCAGAAGTCTCCAGAACACAAAGCCACTCACACAATCCTGTTGCTTGTAAACTGCTTTGTGTTCTTTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAGTCACCAATGGCTCTTaGAATATAGGAAGGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: VRILIRTLARIQEPHNFQVTNGS*NIGREE Trigger: TTCTTCCCTTCCTATATTCAAAGAGCCATTGGTGAC...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAACTGTTAAAGCGAGCTTaGACCCAGAAGTTGAATATA | + |
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Preference number: 5 (lower is better) Translates to: VRILIRTLARIQEPHNFQLLKRA*TQKLNI Trigger: TATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAG...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS-3UTR CAA 90 bp | GTGAGAATTCTAATTAGGACTCTAGCAAGGATTCAAGAGCCACACAACTTTCAAACATATATGACCATGTaGATGAACCAGGAAAACAGG | + |
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Preference number: 5 (lower is better) Translates to: VRILIRTLARIQEPHNFQTYMTM*MNQENR Trigger: CCTGTTTTCCTGGTTCATCAACATGGTCATATATGT...TTGAAAGTTGTGTGGCTCTTGAATCCTTGCTAGAGTCCTAATTAGAATTCTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS GCA 72 bp | TGTGTTCTGGAGACTTCTGAGAGGAGAGTCTTGGGTTaGGGAGATGCTGGGCTCTCTTGTGATGCCTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: CVLETSERRVLG*GDAGLSCDACR Trigger: TCTACAGGCATCACAAGAGAGCCCAGCATCTCCGCAACCCAAGACTCTCCTCTCAGAAGTCTCCAGAACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CCA 72 bp | AAGGTCTCTTGTTATGATAACGCCGAGGAAAAATCCTaGATTGGGGTACTCAACTGGACTACTTTCACAGTA | + |
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Preference number: 6 (lower is better) Translates to: KVSCYDNAEEKS*IGVLNWTTFTV Trigger: TACTGTGAAAGTAGTCCAGTTGAGTACCCCAATCCAGGATTTTTCCTCGGCGTTATCATAACAAGAGACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CAA 72 bp | TCGATCTGTCTGTTAAAGCGAGCTTTGACCCAGAAGTaGAATATATACAGCATGAGGAGCAATGAGTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SICLLKRALTQK*NIYSMRSNEFP Trigger: AGGGAACTCATTGCTCCTCATGCTGTATATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAGACAGATCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CAA 90 bp | ATCAGGTGCATGAAAATGGGATCGATCTGTCTGTTAAAGCGAGCTTaGACCCAGAAGTTGAATATATACAGCATGAGGAGCAATGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: IRCMKMGSICLLKRA*TQKLNIYSMRSNEF Trigger: GAACTCATTGCTCCTCATGCTGTATATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAGACAGATCGATCCCATTTTCATGCACCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CAA 72 bp | ATGAAAATGGGATCGATCTGTCTGTTAAAGCGAGCTTaGACCCAGAAGTTGAATATATACAGCATGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: MKMGSICLLKRA*TQKLNIYSMRS Trigger: GCTCCTCATGCTGTATATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAGACAGATCGATCCCATTTTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS CAA 72 bp | AATAAAAGAACACAAAGCAGTTTACAAGCAACAGGATaGTGTGAGTGGCTTTGTGTTCTGGAGACTTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: NKRTQSSLQATG*CEWLCVLETSE Trigger: CTCAGAAGTCTCCAGAACACAAAGCCACTCACACAATCCTGTTGCTTGTAAACTGCTTTGTGTTCTTTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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| CDS GCA 72 bp | GCAAATATGATTGTCAACATATTGACTATCATCAGGTaGATGAAAATGGGATCGATCTGTCTGTTAAAGCGA | + |
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Preference number: 6 (lower is better) Translates to: ANMIVNILTIIR*MKMGSICLLKR Trigger: TCGCTTTAACAGACAGATCGATCCCATTTTCATGCACCTGATGATAGTCAATATGTTGACAATCATATTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094829.2 ENSMUST00000209822.3 ENSMUST00000235753.2 |
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