RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R83 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066804

Ensembl transcript IDs: ENSMUST00000086229.3, ENSMUST00000226701.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTCCACCAAGTTCCATGTGTTACATGCTGCAGTCCCCTTGGAGATaGCAGCTTTTAGAAGATCAGTGGCTAGTACTTGGGTTATTGCCA +
Preference number: 1 (lower is better)
Translates to: SPPSSMCYMLQSPWR*QLLEDQWLVLGLLP
Trigger: TGGCAATAACCCAAGTACTAGCCACTGATCTTCTAAAAGCTGTCATCTCCAAGGGGACTGCAGCATGTAACACATGGAACTTGGTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR-3UTR GCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAGTTCCATGTGTTACATaGTGCAGTCCCCTTGGAGAT +
Preference number: 2 (lower is better)
Translates to: QSTYNRKILKESTWIHTLVPCVT*CSPLGD
Trigger: ATCTCCAAGGGGACTGCAGCATGTAACACATGGAAC...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR-3UTR CCA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACAGGATATTATAGTACATaGCATGTAGGAGATAGAGTC +
Preference number: 2 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTGYYST*HVGDRV
Trigger: GACTCTATCTCCTACATGCCATGTACTATAATATCC...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR-3UTR GCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTATTGGAGCTAGTGATCTaGCTAAGTGTGGAAATCAAG +
Preference number: 2 (lower is better)
Translates to: QSTYNRKILKESTWIHTLLELVI*LSVEIK
Trigger: CTTGATTTCCACACTTAGGCAGATCACTAGCTCCAA...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR-3UTR TCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAAACTCTTTTGCCTCATaGGTGACTTTTAAGCCTTTC +
Preference number: 2 (lower is better)
Translates to: QSTYNRKILKESTWIHTLNSFAS*VTFKPF
Trigger: GAAAGGCTTAAAAGTCACTCATGAGGCAAAAGAGTT...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR TCA 72 bp AGTTCCATGTGTTACATGCTGCAGTCCCCTTGGAGATaGCAGCTTTTAGAAGATCAGTGGCTAGTACTTGGG +
Preference number: 3 (lower is better)
Translates to: SSMCYMLQSPWR*QLLEDQWLVLG
Trigger: CCCAAGTACTAGCCACTGATCTTCTAAAAGCTGTCATCTCCAAGGGGACTGCAGCATGTAACACATGGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR TCA 72 bp AAAATTCTCACTACAAGTGGCACTAAAGTCAGATTGTaGATGTCTCTCCACCAAGTTCCATGTGTTACATGC +
Preference number: 3 (lower is better)
Translates to: KILTTSGTKVRL*MSLHQVPCVTC
Trigger: GCATGTAACACATGGAACTTGGTGGAGAGACATTCACAATCTGACTTTAGTGCCACTTGTAGTGAGAATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
3UTR CAA 72 bp AAACCCTTGATCTTGGTCAAGGGCGCCCTTGGACTGTaGGAACACTGGCGGAAGGCTTTAGCCATGTCAGAG +
Preference number: 4 (lower is better)
Translates to: KPLILVKGALGL*EHWRKALAMSE
Trigger: CTCTGACATGGCTAAAGCCTTCCGCCAGTGTTCCAACAGTCCAAGGGCGCCCTTGACCAAGATCAAGGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CCA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACAAACTCAATAGGCACATaGCATACAGAGACATCCCCC +
Preference number: 4 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTNSIGT*HTETSP
Trigger: GGGGGATGTCTCTGTATGCCATGTGCCTATTGAGTT...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAAGGGTGAGAATAATTTaGGTGGCTTTGTCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: QSTYNRKILKESTWIHTLRVRII*VALSSG
Trigger: GCCTGAGGACAAAGCCACCCAAATTATTCTCACCCT...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR GCA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACATTGGCAAATGTCAAGTaGTCTATAATCAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTLANVK*SIIRSF
Trigger: GAAAGACCTGATTATAGAGCACTTGACATTTGCCAA...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CCA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACACAAAGGGGCAAAATATaGGGAAGCATATTTCTAGAA +
Preference number: 4 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTQRGKI*GSIFLE
Trigger: TTCTAGAAATATGCTTCCCCATATTTTGCCCCTTTG...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR TCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAATATTGAGTAAGAGATaGCAAATGTGCACACCAGGG +
Preference number: 4 (lower is better)
Translates to: QSTYNRKILKESTWIHTLILSKR*QMCTPG
Trigger: CCCTGGTGTGCACATTTGTCATCTCTTACTCAATAT...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR GCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAATGTTTAGAAGCAGGTaGACAAGCCAACTGACTAAG +
Preference number: 4 (lower is better)
Translates to: QSTYNRKILKESTWIHTLMFRSR*TSQLTK
Trigger: CTTAGTCAGTTGGCTTGTGCACCTGCTTCTAAACAT...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR TCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTACTGTGGAATGCCTTTTaGGATAATAGACAAGCAGTT +
Preference number: 4 (lower is better)
Translates to: QSTYNRKILKESTWIHTLLWNAF*DNRQAV
Trigger: AACTGCTTGTCTATTATCTCAAAAGGCATTCCACAG...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR TCA 90 bp CAACGTCTTTTAAAGAAACCAAAATTCTCACTACAAGTGGCACTAAAGTCAGATTTTAAATCCCAAATCTaGCAGTGTCTGTGGAATGCC +
Preference number: 4 (lower is better)
Translates to: QRLLKKPKFSLQVALKSDFKSQI*QCLWNA
Trigger: GGCATTCCACAGACACTGTCAGATTTGGGATTTAAA...ATCTGACTTTAGTGCCACTTGTAGTGAGAATTTTGGTTTCTTTAAAAGACGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CCA 90 bp AGTAATAAACAACAATTTGGAGCTAGTGATCTGCCTAAGTGTGGAAATCAAGAACTGATTGTGATTGCTTaGAAGCAACTCAATAGGCAC +
Preference number: 4 (lower is better)
Translates to: SNKQQFGASDLPKCGNQELIVIA*KQLNRH
Trigger: GTGCCTATTGAGTTGCTTCCAAGCAATCACAATCAG...TTCTTGATTTCCACACTTAGGCAGATCACTAGCTCCAAATTGTTGTTTATTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CCA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAAAAGGATATTCACCATaGAAACACTTGAACATGTCA +
Preference number: 4 (lower is better)
Translates to: QSTYNRKILKESTWIHTLKGYSP*KHLNMS
Trigger: TGACATGTTCAAGTGTTTCCATGGTGAATATCCTTT...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR TCA 90 bp AGTAATAAACAACAATTTGGAGCTAGTGATCTGCCTAAGTGTGGAAATCAAGAAACTTTCAAAAGTTGTTaGGCACTGTGGATATGTTTG +
Preference number: 4 (lower is better)
Translates to: SNKQQFGASDLPKCGNQETFKSC*ALWICL
Trigger: CAAACATATCCACAGTGCTCAACAACTTTTGAAAGT...TTCTTGATTTCCACACTTAGGCAGATCACTAGCTCCAAATTGTTGTTTATTACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACAGCACTGTGGATATGTTaGACTTGTCTCTTGTGTTTG +
Preference number: 5 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTALWIC*TCLLCL
Trigger: CAAACACAAGAGACAAGTCAAACATATCCACAGTGC...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTACAGGGTGAGAATAATTaGGGTGGCTTTGTCCTCAGG +
Preference number: 5 (lower is better)
Translates to: QSTYNRKILKESTWIHTLQGENN*GGFVLR
Trigger: CCTGAGGACAAAGCCACCCAAATTATTCTCACCCTG...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp TGCAGTTCCTGGGGAGAAAGGAAGAACCCAGAGGTATATTTTCCTGAAGATACACAAGACTTTCAAAAGTaGTTGAGCACTGTGGATATG +
Preference number: 5 (lower is better)
Translates to: CSSWGERKNPEVYFPEDTQDFQK*LSTVDM
Trigger: CATATCCACAGTGCTCAACAACTTTTGAAAGTCTTG...TGTATCTTCAGGAAAATATACCTCTGGGTTCTTCCTTTCTCCCCAGGAACTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS TCA 90 bp CCTCAGGCAAGACTTTCAAAAGTTGTTGAGCACTGTGGATATGTTTaGCTTGTCTCTTGTGTTTGTAAAGGATATTCACCATGGAAACAC +
Preference number: 5 (lower is better)
Translates to: PQARLSKVVEHCGYV*LVSCVCKGYSPWKH
Trigger: GTGTTTCCATGGTGAATATCCTTTACAAACACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp CAGAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACTCTAGTGGATATGTTTGACTaGTCTCTTGTGTTTGTAAAG +
Preference number: 5 (lower is better)
Translates to: QSTYNRKILKESTWIHTLVDMFD*SLVFVK
Trigger: CTTTACAAACACAAGAGACAAGTCAAACATATCCAC...TAGAGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp AGTAATAAACAACAATTTGGAGCTAGTGATCTGCCTAAGTGTGGAAATCAAGAAAAACTACACTTGATATaGCTGATGAGAACAAAGGGG +
Preference number: 5 (lower is better)
Translates to: SNKQQFGASDLPKCGNQEKLHLI*LMRTKG
Trigger: CCCCTTTGTTCTCATCAGCAATATCAAGTGTAGTTT...TTCTTGATTTCCACACTTAGGCAGATCACTAGCTCCAAATTGTTGTTTATTACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp AGTAATAAACAACAATTTGGAGCTAGTGATCTGCCTAAGTGTGGAAATCAAGAATCACCATGGAAACACTaGAACATGTCATTAGACTTA +
Preference number: 5 (lower is better)
Translates to: SNKQQFGASDLPKCGNQESPWKH*NMSLDL
Trigger: TAAGTCTAATGACATGTTCAAGTGTTTCCATGGTGA...TTCTTGATTTCCACACTTAGGCAGATCACTAGCTCCAAATTGTTGTTTATTACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS-3UTR CAA 90 bp CAACGTCTTTTAAAGAAACCAAAATTCTCACTACAAGTGGCACTAAAGTCAGATGACTTTCAAAAGTTGTaGAGCACTGTGGATATGTTT +
Preference number: 5 (lower is better)
Translates to: QRLLKKPKFSLQVALKSDDFQKL*STVDMF
Trigger: AAACATATCCACAGTGCTCAACAACTTTTGAAAGTC...ATCTGACTTTAGTGCCACTTGTAGTGAGAATTTTGGTTTCTTTAAAAGACGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226701.2
CDS GCA 72 bp ATCACTTTTACTGGCGTCATAATGTTTAGAAGCAGGTaGACAAGCCAACTGACTAAGCAGGAGGGACCAACG +
Preference number: 6 (lower is better)
Translates to: ITFTGVIMFRSR*TSQLTKQEGPT
Trigger: CGTTGGTCCCTCCTGCTTAGTCAGTTGGCTTGTGCACCTGCTTCTAAACATTATGACGCCAGTAAAAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS TCA 72 bp ATACAGTGCAGTTGCAACATTGCTGGAAGTGAACCATaGGCAGTACCCATAACTCATCACGTTCGTCACATT +
Preference number: 6 (lower is better)
Translates to: IQCSCNIAGSEP*AVPITHHVRHI
Trigger: AATGTGACGAACGTGATGAGTTATGGGTACTGCTCATGGTTCACTTCCAGCAATGTTGCAACTGCACTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CCA 72 bp GAGATGACAAATGTGCACACCAGGGTGAGAATAATTTaGGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAGT +
Preference number: 6 (lower is better)
Translates to: EMTNVHTRVRII*VALSSGKTFKS
Trigger: ACTTTTGAAAGTCTTGCCTGAGGACAAAGCCACCCAAATTATTCTCACCCTGGTGTGCACATTTGTCATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 72 bp GGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAGTTGTaGAGCACTGTGGATATGTTTGACTTGTCTCTTGTG +
Preference number: 6 (lower is better)
Translates to: GGFVLRQDFQKL*STVDMFDLSLV
Trigger: CACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGGACAAAGCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 72 bp AGAGATGACAAATGTGCACACCAGGGTGAGAATAATTaGGGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAG +
Preference number: 6 (lower is better)
Translates to: RDDKCAHQGENN*GGFVLRQDFQK
Trigger: CTTTTGAAAGTCTTGCCTGAGGACAAAGCCACCCAAATTATTCTCACCCTGGTGTGCACATTTGTCATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 72 bp TTGGGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAGTaGTTGAGCACTGTGGATATGTTTGACTTGTCTCTT +
Preference number: 6 (lower is better)
Translates to: LGGFVLRQDFQK*LSTVDMFDLSL
Trigger: AAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGGACAAAGCCACCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 90 bp GAGAATAATTTGGGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAGTaGTTGAGCACTGTGGATATGTTTGACTTGTCTCTTGTGTTTGTA +
Preference number: 6 (lower is better)
Translates to: ENNLGGFVLRQDFQK*LSTVDMFDLSLVFV
Trigger: TACAAACACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGGACAAAGCCACCCAAATTATTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 90 bp AATAATTTGGGTGGCTTTGTCCTCAGGCAAGACTTTCAAAAGTTGTaGAGCACTGTGGATATGTTTGACTTGTCTCTTGTGTTTGTAAAG +
Preference number: 6 (lower is better)
Translates to: NNLGGFVLRQDFQKL*STVDMFDLSLVFVK
Trigger: CTTTACAAACACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGGACAAAGCCACCCAAATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS TCA 72 bp AGAGTAGGTTGTAAAGATTACACGAATAGAAGATATTaGGTAAGAGATGACAAATGTGCACACCAGGGTGAG +
Preference number: 6 (lower is better)
Translates to: RVGCKDYTNRRY*VRDDKCAHQGE
Trigger: CTCACCCTGGTGTGCACATTTGTCATCTCTTACTCAATATCTTCTATTCGTGTAATCTTTACAACCTACTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 72 bp TCTTGTGTTTGTAAAGGATATTCACCATGGAAACACTaGAACATGTCATTAGACTTAGACACAGGCCATCAC +
Preference number: 6 (lower is better)
Translates to: SCVCKGYSPWKH*NMSLDLDTGHH
Trigger: GTGATGGCCTGTGTCTAAGTCTAATGACATGTTCAAGTGTTTCCATGGTGAATATCCTTTACAAACACAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS GCA 72 bp TTTGAGATAATAGACAAGCAGTTGGCAAATGTCAAGTaGTCTATAATCAGGTCTTTCGGTGTTAAATGTTTC +
Preference number: 6 (lower is better)
Translates to: FEIIDKQLANVK*SIIRSFGVKCF
Trigger: GAAACATTTAACACCGAAAGACCTGATTATAGAGCACTTGACATTTGCCAACTGCTTGTCTATTATCTCAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2
CDS CAA 72 bp TTTCAAAAGTTGTTGAGCACTGTGGATATGTTTGACTaGTCTCTTGTGTTTGTAAAGGATATTCACCATGGA +
Preference number: 6 (lower is better)
Translates to: FQKLLSTVDMFD*SLVFVKDIHHG
Trigger: TCCATGGTGAATATCCTTTACAAACACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086229.3
ENSMUST00000226701.2