Pregenerated sensors for VMN1R8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061208Ensembl transcript IDs: ENSMUST00000078186.4, ENSMUST00000227706.2, ENSMUST00000228690.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTAAGACTAAATCCAAGGACTCCTATGATATCTTCTTACCTCTGTaGGCACCAGAAATGCAAACATACATACACACTTGCCACAGCACA | + |
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Preference number: 1 (lower is better) Translates to: CKTKSKDSYDIFLPL*APEMQTYIHTCHST Trigger: TGTGCTGTGGCAAGTGTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGAGTCCTTGGATTTAGTCTTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCATGCCCTTTCCCAATTACCCACCTCAGAAACTTCCTATCACATCCCCACTATCTTCTTACCTCTGTaGGCACCAGAAATGCAAACA | + |
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Preference number: 2 (lower is better) Translates to: WHALSQLPTSETSYHIPTIFLPL*APEMQT Trigger: TGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGAT...AGTGGGGATGTGATAGGAAGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR-3UTR CCA 90 bp | ATACAGAACAATTCTTTCTACCTATCTGTAAGACTAAATCCAAGGACTCCTATGATCTTCTTACCTCTGTaGGCACCAGAAATGCAAACA | + |
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Preference number: 2 (lower is better) Translates to: IQNNSFYLSVRLNPRTPMIFLPL*APEMQT Trigger: TGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGAT...CATAGGAGTCCTTGGATTTAGTCTTACAGATAGGTAGAAAGAATTGTTCTGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR-3UTR GCA 90 bp | CAGAACAATTCTTTCTACCTATCTGTAAGACTAAATCCAAGGACTCCTATGATATGTGGGCACCAGAAATaGAAACATACATACACACTT | + |
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Preference number: 2 (lower is better) Translates to: QNNSFYLSVRLNPRTPMICGHQK*KHTYTL Trigger: AAGTGTGTATGTATGTTTGCATTTCTGGTGCCCACA...TATCATAGGAGTCCTTGGATTTAGTCTTACAGATAGGTAGAAAGAATTGTTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR-3UTR CAA 90 bp | GCATGCCCTTTCCCAATTACCCACCTCAGAAACTTCCTATCACATCCCCACTTCAACATACATACACACTaGCCACAGCACACACTGGTA | + |
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Preference number: 3 (lower is better) Translates to: ACPFPITHLRNFLSHPHFNIHTH*PQHTLV Trigger: TACCAGTGTGTGCTGTGGCAAGTGTGTATGTATGTT...GAAGTGGGGATGTGATAGGAAGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR CCA 72 bp | TTCTCCCACTTCTATGAGGGTGTGCAAAGGGAACTTTaGGCCAATTTCCCTTATGAATATCAATGCAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: FSHFYEGVQREL*ANFPYEYQCKN Trigger: ATTTTTGCATTGATATTCATAAGGGAAATTGGCCCAAAGTTCCCTTTGCACACCCTCATAGAAGTGGGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| 3UTR-3UTR CAA 90 bp | ATACAGAACAATTCTTTCTACCTATCTGTAAGACTAAATCCAAGGACTCCTATGAACATACATACACACTaGCCACAGCACACACTGGTA | + |
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Preference number: 3 (lower is better) Translates to: IQNNSFYLSVRLNPRTPMNIHTH*PQHTLV Trigger: TACCAGTGTGTGCTGTGGCAAGTGTGTATGTATGTT...CATAGGAGTCCTTGGATTTAGTCTTACAGATAGGTAGAAAGAATTGTTCTGTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | CTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACACTTGCCACAGAGGTGGCTGAAGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LLTSVGTRNANIHTHLPQRWLKL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCTTCAGCCACCT...CTGTGGCAAGTGTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | TGGCATGCCCTTTCCCAATTACCCACCTCAGAAACTTCCTATCACATCCCCACTTCTGAAGAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: WHALSQLPTSETSYHIPTSEESG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTCTTCAGA...AGTGGGGATGTGATAGGAAGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | AAGGACTCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACAGGTGGCTGAAGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KDSYDIFLPLWAPEMQTYRWLKL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCTTCAGCCACCT...GTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGAGTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | CCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACAAGGTGGCTGAAGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PMISSYLCGHQKCKHTYTRWLKL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCTTCAGCCACCT...TGTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | TCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACACTCTCTCAGGTGGCTaGAGCTATGAAGATGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SYDIFLPLWAPEMQTYIHTLSGG*SYEDAC Trigger: GCAAGCATCTTCATAGCTTCAGCCACCTGAGAGAGT...GTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | TCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACTCTGAAGAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: SYDIFLPLWAPEMQTYIHSEESG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTCTTCAGA...GTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CCA 90 bp | CTAAATCCAAGGACTCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAGAGTCAGGATGACTaGGTCATACATCCATATCAT | + |
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Preference number: 4 (lower is better) Translates to: LNPRTPMISSYLCGHQKCKSQDD*VIHPYH Trigger: ATGATATGGATGTATGACCCAGTCATCCTGACTCTT...GCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGAGTCCTTGGATTTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | ATACAGAACAATTCTTTCTACCTATCTGTAAGACTAAATCCAAGGACTCCTATGACTCTCTCAGGTGGCTaGAGCTATGAAGATGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: IQNNSFYLSVRLNPRTPMTLSGG*SYEDAC Trigger: GCAAGCATCTTCATAGCTTCAGCCACCTGAGAGAGT...CATAGGAGTCCTTGGATTTAGTCTTACAGATAGGTAGAAAGAATTGTTCTGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CCA 90 bp | TATTTACATTTGAAATGGCATGCCCTTTCCCAATTACCCACCTCAGAAACTTCCAAGAGTCAGGATGACTaGGTCATACATCCATATCAT | + |
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Preference number: 4 (lower is better) Translates to: YLHLKWHALSQLPTSETSKSQDD*VIHPYH Trigger: ATGATATGGATGTATGACCCAGTCATCCTGACTCTT...GGAAGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGCCATTTCAAATGTAAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR TCA 90 bp | CAGAACAATTCTTTCTACCTATCTGTAAGACTAAATCCAAGGACTCCTATGATATCTGAAGAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: QNNSFYLSVRLNPRTPMISEESG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTCTTCAGA...TATCATAGGAGTCCTTGGATTTAGTCTTACAGATAGGTAGAAAGAATTGTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CCA 90 bp | ATTTATTTACATTTGAAATGGCATGCCCTTTCCCAATTACCCACCTCAGAAACTAAGAGTCAGGATGACTaGGTCATACATCCATATCAT | + |
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Preference number: 4 (lower is better) Translates to: IYLHLKWHALSQLPTSETKSQDD*VIHPYH Trigger: ATGATATGGATGTATGACCCAGTCATCCTGACTCTT...AGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGCCATTTCAAATGTAAATAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CAA 90 bp | TGGCATGCCCTTTCCCAATTACCCACCTCAGAAACTTCCTATCACATCCCCACTGTGCACAAAGGACAGTaGACAGGAGATCAGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: WHALSQLPTSETSYHIPTVHKGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGTCCTTTGTGCAC...AGTGGGGATGTGATAGGAAGTTTCTGAGGTGGGTAATTGGGAAAGGGCATGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CAA 90 bp | CTAAATCCAAGGACTCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCGTGCACAAAGGACAGTaGACAGGAGATCAGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LNPRTPMISSYLCGHQKCVHKGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGTCCTTTGTGCAC...GCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGAGTCCTTGGATTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACACTTGCCACAGTGACCTGCATCTGGTaGGTCTCACTCACATTCGTA | + |
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Preference number: 5 (lower is better) Translates to: SSYLCGHQKCKHTYTLATVTCIW*VSLTFV Trigger: TACGAATGTGAGTGAGACCAACCAGATGCAGGTCAC...TGTGGCAAGTGTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CAA 90 bp | AGGACTCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACAGTGCACAAAGGACAGTaGACAGGAGATCAGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RTPMISSYLCGHQKCKHTVHKGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGTCCTTTGTGCAC...TGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGAGTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS-3UTR CAA 90 bp | TCCTATGATATCTTCTTACCTCTGTGGGCACCAGAAATGCAAACATACATACACGTGACCTGCATCTGGTaGGTCTCACTCACATTCGTA | + |
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Preference number: 5 (lower is better) Translates to: SYDIFLPLWAPEMQTYIHVTCIW*VSLTFV Trigger: TACGAATGTGAGTGAGACCAACCAGATGCAGGTCAC...GTGTATGTATGTTTGCATTTCTGGTGCCCACAGAGGTAAGAAGATATCATAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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| CDS GCA 72 bp | TGGTTCATGGGTAAGAGTGAGCAGGATTTAGTGACCTaGATCTGGTTGGTCTCACTCACATTCGTAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: WFMGKSEQDLVT*IWLVSLTFVKP Trigger: TGGTTTTACGAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCTCACTCTTACCCATGAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078186.4 ENSMUST00000227706.2 ENSMUST00000228690.2 |
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