RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R77 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095864

Ensembl transcript IDs: ENSMUST00000164446.2, ENSMUST00000226525.2, ENSMUST00000227320.2, ENSMUST00000228213.2

Found 259 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAACTCTTTGCTTGGTCTCGCTCCCCTTTCTCTGCCCGCTTCTCTTaGAGGCCTCGGTCCTCCTCTACCCACGGAATAACTAGGTCCTGC +
Preference number: 1 (lower is better)
Translates to: QLFAWSRSPFSARFS*RPRSSSTHGITRSC
Trigger: GCAGGACCTAGTTATTCCGTGGGTAGAGGAGGACCGAGGCCTGCAAGAGAAGCGGGCAGAGAAAGGGGAGCGAGACCAAGCAAAGAGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp CCCTTTGAAGGGAATTATGTCACCCCCTCCTTCATTGCCTCCACCTaGTGCCTGAGACTGTCAGCTTCACTCCCTCCTTCACTTGGCGCC +
Preference number: 1 (lower is better)
Translates to: PFEGNYVTPSFIAST*CLRLSASLPPSLGA
Trigger: GGCGCCAAGTGAAGGAGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGTGACATAATTCCCTTCAAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp AAGGGAATTATGTCACCCCCTCCTTCATTGCCTCCACCTGGTGCCTaGGACTGTCAGCTTCACTCCCTCCTTCACTTGGCGCCTAGAACT +
Preference number: 1 (lower is better)
Translates to: KGIMSPPPSLPPPGA*DCQLHSLLHLAPRT
Trigger: AGTTCTAGGCGCCAAGTGAAGGAGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGTGACATAATTCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp TGCCTGGGACTGTTTATGGCACTCCAAGATAAACTGCAGAATGTTTaGAGGCCACACGGGACTGCTTTAGGGCCGAGATTCCAAGATAAG +
Preference number: 1 (lower is better)
Translates to: CLGLFMALQDKLQNV*RPHGTALGPRFQDK
Trigger: CTTATCTTGGAATCTCGGCCCTAAAGCAGTCCCGTGTGGCCTTCAAACATTCTGCAGTTTATCTTGGAGTGCCATAAACAGTCCCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp CTGCTTAGATTAAGGCAGCTTCACCTCCTCCTCCATGTCTCCATTTaGTGCCTGGGACTGTTTATGGCACTCCAAGATAAACTGCAGAAT +
Preference number: 1 (lower is better)
Translates to: LLRLRQLHLLLHVSI*CLGLFMALQDKLQN
Trigger: ATTCTGCAGTTTATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAGGTGAAGCTGCCTTAATCTAAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp GAGGAATGGGGGTTCAGAATCAAGTGTGAGGAAGGTCAGGAGAGATaGCTAGAAATCCATCTAAAACTAACAGGAGTAAGGAGGTGGAGG +
Preference number: 1 (lower is better)
Translates to: EEWGFRIKCEEGQER*LEIHLKLTGVRRWR
Trigger: CCTCCACCTCCTTACTCCTGTTAGTTTTAGATGGATTTCTAGCCATCTCTCCTGACCTTCCTCACACTTGATTCTGAACCCCCATTCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp ATTCTGTTGCCTGCCGTTGGTTCCTTTTCCCATAACTGGACTGCTTaGTTGGGCCTATGTGGGAAAAGACATACTAAGTCTTTCCAGGAC +
Preference number: 1 (lower is better)
Translates to: ILLPAVGSFSHNWTA*LGLCGKRHTKSFQD
Trigger: GTCCTGGAAAGACTTAGTATGTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGTTATGGGAAAAGGAACCAACGGCAGGCAACAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp GATGGAGGGAGAATGGCAAGAGGAATGGGGGTTCAGAATCAAGTGTaGGGAAGGTCAGGAGAGATGGCTAGAAATCCATCTAAAACTAAC +
Preference number: 1 (lower is better)
Translates to: DGGRMARGMGVQNQV*GRSGEMARNPSKTN
Trigger: GTTAGTTTTAGATGGATTTCTAGCCATCTCTCCTGACCTTCCTCACACTTGATTCTGAACCCCCATTCCTCTTGCCATTCTCCCTCCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp TGTTGCCTGCCGTTGGTTCCTTTTCCCATAACTGGACTGCTTGATTaGGCCTATGTGGGAAAAGACATACTAAGTCTTTCCAGGACTAGA +
Preference number: 1 (lower is better)
Translates to: CCLPLVPFPITGLLD*AYVGKDILSLSRTR
Trigger: TCTAGTCCTGGAAAGACTTAGTATGTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGTTATGGGAAAAGGAACCAACGGCAGGCAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp GGGCCATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATaGTCTGTCAATAGCTCATCAGGTCTGGAGTGTCCTGAATTCCTC +
Preference number: 1 (lower is better)
Translates to: GPYSYGKLLFHAQKP*SVNSSSGLECPEFL
Trigger: GAGGAATTCAGGACACTCCAGACCTGATGAGCTATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATGGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp ATCTCAGATATGGGTTCTGTATGTTTCAGCTATGGGCAGGAGCTCTaGATCCCACTTCATGTGTTCAGTATTGGGAGTGTAGCTGAACTT +
Preference number: 1 (lower is better)
Translates to: ISDMGSVCFSYGQEL*IPLHVFSIGSVAEL
Trigger: AAGTTCAGCTACACTCCCAATACTGAACACATGAAGTGGGATGCAGAGCTCCTGCCCATAGCTGAAACATACAGAACCCATATCTGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp TTTTCCATGCCCAGAAACCATGATCTGTCAATAGCTCATCAGGTCTaGAGTGTCCTGAATTCCTCCCTCATGCTAGACTGTTTACTGTCT +
Preference number: 1 (lower is better)
Translates to: FSMPRNHDLSIAHQV*SVLNSSLMLDCLLS
Trigger: AGACAGTAAACAGTCTAGCATGAGGGAGGAATTCAGGACACTCCAGACCTGATGAGCTATTGACAGATCATGGTTTCTGGGCATGGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp CATGTGGTTTTGTCCTGGATCCCTCTAGTCATTGTGTGTCCTCATTaGTGCTCTTCTATTAGAACTTTATTGCAAATCCTCCTTGTCCAC +
Preference number: 1 (lower is better)
Translates to: HVVLSWIPLVIVCPH*CSSIRTLLQILLVH
Trigger: GTGGACAAGGAGGATTTGCAATAAAGTTCTAATAGAAGAGCAGCAATGAGGACACACAATGACTAGAGGGATCCAGGACAAAACCACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp GTCTTCTTATGTACAGAAATCATGTGTTTCTGCTTTCCATGTGTTTaGAGCTGGCCTCTTCCAAGGTTCACTGTTGTGGAGTTTAACCAG +
Preference number: 1 (lower is better)
Translates to: VFLCTEIMCFCFPCV*SWPLPRFTVVEFNQ
Trigger: CTGGTTAAACTCCACAACAGTGAACCTTGGAAGAGGCCAGCTGCAAACACATGGAAAGCAGAAACACATGATTTCTGTACATAAGAAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp TTATGTACAGAAATCATGTGTTTCTGCTTTCCATGTGTTTGCAGCTaGCCTCTTCCAAGGTTCACTGTTGTGGAGTTTAACCAGGAGTTG +
Preference number: 1 (lower is better)
Translates to: LCTEIMCFCFPCVCS*PLPRFTVVEFNQEL
Trigger: CAACTCCTGGTTAAACTCCACAACAGTGAACCTTGGAAGAGGCCAGCTGCAAACACATGGAAAGCAGAAACACATGATTTCTGTACATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp CCAGCAGAATGTCTTTGTTGGAGGATTTGCAGCCTGAATGATCTCTaGAATTTAGGTGACAATTTTGCCTCTGGGATTCCAAGTATCTGT +
Preference number: 1 (lower is better)
Translates to: PAECLCWRICSLNDL*NLGDNFASGIPSIC
Trigger: ACAGATACTTGGAATCCCAGAGGCAAAATTGTCACCTAAATTTCAGAGATCATTCAGGCTGCAAATCCTCCAACAAAGACATTCTGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTaGATTCTCCATCTACTTAACCCTCTCCAATTCACTCTGAACCAA +
Preference number: 1 (lower is better)
Translates to: ANKTYAYTTHIDLIV*ILHLLNPLQFTLNQ
Trigger: TTGGTTCAGAGTGAATTGGAGAGGGTTAAGTAGATGGAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp CAAAGGGTGTGGTATCTTCAGCAAGAGGATTTTACTATAAAGTTCTaGTTTGTGACAAGGAGCAATGCCAGTAGTCTGCATTGTTTGGGT +
Preference number: 1 (lower is better)
Translates to: QRVWYLQQEDFTIKF*FVTRSNASSLHCLG
Trigger: ACCCAAACAATGCAGACTACTGGCATTGCTCCTTGTCACAAAGCAGAACTTTATAGTAAAATCCTCTTGCTGAAGATACCACACCCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 90 bp CACATTATGTACATGTGTCAAGTTAATATTATGGACTTGGGATCCTaGCATGTCATTGTCCACATGACTATGTGCCTGTTTCAGAGAGGA +
Preference number: 1 (lower is better)
Translates to: HIMYMCQVNIMDLGS*HVIVHMTMCLFQRG
Trigger: TCCTCTCTGAAACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATATTAACTTGACACATGTACATAATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 90 bp AGAAAGAAGGAAACTCTCAACATTACTTGGTCTAACATTCCCCCTTaGCTGTCACTAGGAAATTGCCTTCAATCTTGGAATTTGCTAATG +
Preference number: 1 (lower is better)
Translates to: RKKETLNITWSNIPP*LSLGNCLQSWNLLM
Trigger: CATTAGCAAATTCCAAGATTGAAGGCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGACCAAGTAATGTTGAGAGTTTCCTTCTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp GGTCACAGATGGTTAAGGTTATTAATGACTTCTTCCTTATCATCCTaGATGCATCTCAACTACTGTAGAGTGTACCCAGAAATGATGAGT +
Preference number: 1 (lower is better)
Translates to: GHRWLRLLMTSSLSS*MHLNYCRVYPEMMS
Trigger: ACTCATCATTTCTGGGTACACTCTACAGTAGTTGAGATGCATTCAGGATGATAAGGAAGAAGTCATTAATAACCTTAACCATCTGTGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 90 bp CAGACCCAAACACCTAAACAAGGAGTAAGAACCATCATGGAAACTTaGATCTCATTTAGAAGGGGGACTAATATATTCAAAAGAGGTAGA +
Preference number: 1 (lower is better)
Translates to: QTQTPKQGVRTIMET*ISFRRGTNIFKRGR
Trigger: TCTACCTCTTTTGAATATATTAGTCCCCCTTCTAAATGAGATTCAAGTTTCCATGATGGTTCTTACTCCTTGTTTAGGTGTTTGGGTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTCCATGTGTTTGCAGCTaGCCTCTTCCAAGGTTCACT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPPCVCS*PLPRFT
Trigger: AGTGAACCTTGGAAGAGGCCAGCTGCAAACACATGG...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTATGGACTTGGGATCCTaGCATGTCATTGTCCACATG +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPMDLGS*HVIVHM
Trigger: CATGTGGACAATGACATGCCAGGATCCCAAGTCCAT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTAATTACAGACAGTTGTaGGCTGCTATATGGGTGCAG +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPNYRQL*AAIWVQ
Trigger: CTGCACCCATATAGCAGCTCACAACTGTCTGTAATT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTACCTCCACCTGGTGCCTaGGACTGTCAGCTTCACTCC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLPPPGA*DCQLHS
Trigger: GGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGG...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTCTAACATTCCCCCTTaGCTGTCACTAGGAAATTGC +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPSNIPP*LSLGNC
Trigger: GCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTGCTTCTACCTTACATaGTGCACACATACTTCAGAC +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPCFYLT*CTHTSD
Trigger: GTCTGAAGTATGTGTGCATCATGTAAGGTAGAAGCA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGAGCAGGAGTTGTCTCTaGTTCTGTTGCCTGCCGTTG +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGSRSCL*FCCLPL
Trigger: CAACGGCAGGCAACAGAATCAGAGACAACTCCTGCT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTGTCTGGATTGTAACCTaGTTTCTGGGCATAGGAATT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPVWIVT*FLGIGI
Trigger: AATTCCTATGCCCAGAAATCAGGTTACAATCCAGAC...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTGCTTATTTACCATGTaGTTTTGTCCTGGATCCCTC +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPCLFTM*FCPGSL
Trigger: GAGGGATCCAGGACAAAACCACATGGTAAATAAGCA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTCATTAAACAGACCTTaGCAACTCTTTGCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPSLNRP*QLFAWS
Trigger: AGACCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTAACATATGTGGGGCATaGCAAACCACATCTGAATAT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPNICGA*QTTSEY
Trigger: ATATTCAGATGTGGTTTGGCATGCCCCACATATGTT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGGAGTCACTCATTCTCTaGACTTTGGTCAGTGTGGGG +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGESLIL*TLVSVG
Trigger: CCCCACACTGACCAAAGTGCAGAGAATGAGTGACTC...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATCCATGTGTTTGCAGCTaGCCTCTTCCAAGGTTCACT +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDPCVCS*PLPRFT
Trigger: AGTGAACCTTGGAAGAGGCCAGCTGCAAACACATGG...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGTCATTCTCTGCACTTTaGTCAGTGTGGGGACCCCAT +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGSFSAL*SVWGPH
Trigger: ATGGGGTCCCCACACTGACCAAAGTGCAGAGAATGA...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTATTGTGTGTCCTCATTaGTGCTCTTCTATTAGAACT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPIVCPH*CSSIRT
Trigger: AGTTCTAATAGAAGAGCAGCAATGAGGACACACAAT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGTCTGCCCGCTTCTCTTaGAGGCCTCGGTCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLSARFS*RPRSSS
Trigger: AGAGGAGGACCGAGGCCTGCAAGAGAAGCGGGCAGA...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGTACGTCCCAACAAAGTaGCCCACTATTTGTCACCTG +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGYVPTK*PTICHL
Trigger: CAGGTGACAAATAGTGGGGCACTTTGTTGGGACGTA...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATATGGACTTGGGATCCTaGCATGTCATTGTCCACATG +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDMDLGS*HVIVHM
Trigger: CATGTGGACAATGACATGCCAGGATCCCAAGTCCAT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGACTGGACTGCTTGATTaGGCCTATGTGGGAAAAGAC +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGTGLLD*AYVGKD
Trigger: GTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTCTTTATAATGGCTGCTaGCCAACAAAACATATGCAT +
Preference number: 2 (lower is better)
Translates to: TPSFIASTWCLRLSASLPLYNGC*PTKHMH
Trigger: ATGCATATGTTTTGTTGGCCAGCAGCCATTATAAAG...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGATAGCTCATCAGGTCTaGAGTGTCCTGAATTCCTCC +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGIAHQV*SVLNSS
Trigger: GGAGGAATTCAGGACACTCCAGACCTGATGAGCTAT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGGTCCACATGACTATGTaGCTGTTTCAGAGAGGATCA +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGVHMTM*LFQRGS
Trigger: TGATCCTCTCTGAAACAGGCACATAGTCATGTGGAC...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATTTTAACCAGGAGTTGTaGTTCACTGGATTCCTGACC +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDFNQEL*FTGFLT
Trigger: GGTCAGGAATCCAGTGAAGCACAACTCCTGGTTAAA...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGATGTCATTGTCCACATaGCTATGTGCCTGTTTCAGA +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGMSLST*LCACFR
Trigger: TCTGAAACAGGCACATAGTCATGTGGACAATGACAT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATCCTTGTCCACCCTCATaGTCTTTCTACTTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDPCPPS*SFYFFS
Trigger: AGAAAAGAAGTAGAAAGATCATGAGGGTGGACAAGG...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATGGAATAACTAGGTCCTaGAAGACAGGACAAATGTCT +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDGITRS*KTGQMS
Trigger: AGACATTTGTCCTGTCTTGCAGGACCTAGTTATTCC...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGGCAATGCCAGTAGTCTaGATTGTTTGGGTGACTTTA +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGAMPVV*IVWVTL
Trigger: TAAAGTCACCCAAACAATGCAGACTACTGGCATTGC...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGAATTGCAAACATATGTaGGGCATGCCAAACCACATC +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGNCKHM*GMPNHI
Trigger: GATGTGGTTTGGCATGCCCCACATATGTTTGCAATT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATAATTGCAAACATATGTaGGGCATGCCAAACCACATC +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDNCKHM*GMPNHI
Trigger: GATGTGGTTTGGCATGCCCCACATATGTTTGCAATT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAACTGGACTGCTTGATTaGGCCTATGTGGGAAAAGAC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLTGLLD*AYVGKD
Trigger: GTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATCCACAAAACAACTACTaGTCATTCCACATAATGGAG +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDPQNNY*SFHIME
Trigger: CTCCATTATGTGGAATGATCAGTAGTTGTTTTGTGG...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAAATTACAGACAGTTGTaGGCTGCTATATGGGTGCAG +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLNYRQL*AAIWVQ
Trigger: CTGCACCCATATAGCAGCTCACAACTGTCTGTAATT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGTCTGTTTCTCATCATaGCCTCATAGCAAATCCTCC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLVCFSS*PHSKSS
Trigger: GGAGGATTTGCTATGAGGTCATGATGAGAAACAGAC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGTCCACATGACTATGTaGCTGTTTCAGAGAGGATCA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLVHMTM*LFQRGS
Trigger: TGATCCTCTCTGAAACAGGCACATAGTCATGTGGAC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGAACATATGTGGGGCATaGCAAACCACATCTGAATAT +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGNICGA*QTTSEY
Trigger: ATATTCAGATGTGGTTTGGCATGCCCCACATATGTT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATCTAACATTCCCCCTTaGCTGTCACTAGGAAATTGC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLSNIPP*LSLGNC
Trigger: GCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATGGCCAACAAAACATATaGATACACAACCCACATAGA +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDGQQNI*IHNPHR
Trigger: TCTATGTGGGTTGTGTATGCATATGTTTTGTTGGCC...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATTTAACCAGGAGTTGTaGTTCACTGGATTCCTGACC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLFNQEL*FTGFLT
Trigger: GGTCAGGAATCCAGTGAAGCACAACTCCTGGTTAAA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATCTGCCCGCTTCTCTTaGAGGCCTCGGTCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSISARFS*RPRSSS
Trigger: AGAGGAGGACCGAGGCCTGCAAGAGAAGCGGGCAGA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGGTCAAGTTAATATTATaGACTTGGGATCCTGGCATG +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGVKLIL*TWDPGM
Trigger: CATGCCAGGATCCCAAGTCCATAATATTAACTTGAC...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTACCACTGGCTCTAAGCTaGGCATATTCTGAGTTATTC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLPLALS*AYSELF
Trigger: GAATAACTCAGAATATGCCCAGCTTAGAGCCAGTGG...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAACATACTTCAGACTGTaGGGGGAAGGAAACATTTCT +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLTYFRL*GEGNIS
Trigger: AGAAATGTTTCCTTCCCCTCACAGTCTGAAGTATGT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGCTATTAGAACTTTATTaGAAATCCTCCTTGTCCACC +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGLLELY*KSSLST
Trigger: GGTGGACAAGGAGGATTTGCAATAAAGTTCTAATAG...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGATTGTGTGTCCTCATTaGTGCTCTTCTATTAGAACT +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGIVCPH*CSSIRT
Trigger: AGTTCTAATAGAAGAGCAGCAATGAGGACACACAAT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGCTGTCACTAGGAAATTaGCTTCAATCTTGGAATTTG +
Preference number: 2 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGLSLGN*LQSWNL
Trigger: CAAATTCCAAGATTGAAGGCAATTTCCTAGTGACAG...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTGGAGGAGAGGAGGGTaGGGGGCTTCAATTAGTATA +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILWRRGG*GASISI
Trigger: TATACTAATTGAAGCCCCGCACCCTCCTCTCCTCCA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATGAACTTTATAATGGCTaGTGGCCAACAAAACATATG +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDELYNG*WPTKHM
Trigger: CATATGTTTTGTTGGCCAGCAGCCATTATAAAGTTC...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGCAATGCCAGTAGTCTaGATTGTTTGGGTGACTTTA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLAMPVV*IVWVTL
Trigger: TAAAGTCACCCAAACAATGCAGACTACTGGCATTGC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATGGTATATCTCAGATATaGGTTCTGTATGTTTCAGCT +
Preference number: 2 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDGISQI*VLYVSA
Trigger: AGCTGAAACATACAGAACCCATATCTGAGATATACC...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATTCATTGCCTCCACCTaGTGCCTGAGACTGTCAGCT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQFIAST*CLRLSA
Trigger: AGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTACCACAAAACAACTACTaGTCATTCCACATAATGGAG +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLPQNNY*SFHIME
Trigger: CTCCATTATGTGGAATGATCAGTAGTTGTTTTGTGG...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATCATTAAACAGACCTTaGCAACTCTTTGCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLSLNRP*QLFAWS
Trigger: AGACCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGCCAACAAAACATATaGATACACAACCCACATAGA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLGQQNI*IHNPHR
Trigger: TCTATGTGGGTTGTGTATGCATATGTTTTGTTGGCC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATCTTTGTCCCCTTTTTaGACAAATAACCACAGAGCA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLSLSPF*TNNHRA
Trigger: TGCTCTGTGGTTATTTGTGCAAAAAGGGGACAAAGA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAACCATGTGTTTGCAGCTaGCCTCTTCCAAGGTTCACT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQPCVCS*PLPRFT
Trigger: AGTGAACCTTGGAAGAGGCCAGCTGCAAACACATGG...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATCATTCTCTGCACTTTaGTCAGTGTGGGGACCCCAT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQSFSAL*SVWGPH
Trigger: ATGGGGTCCCCACACTGACCAAAGTGCAGAGAATGA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAAGCAGGAGTTGTCTCTaGTTCTGTTGCCTGCCGTTG +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSISRSCL*FCCLPL
Trigger: CAACGGCAGGCAACAGAATCAGAGACAACTCCTGCT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTGCCAACACCTGAATTaGAAACATATGTGGGGCATG +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILCQHLN*KHMWGM
Trigger: CATGCCCCACATATGTTTGCAATTCAGGTGTTGGCA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTCTAACATTCCCCCTTaGCTGTCACTAGGAAATTGC +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILSNIPP*LSLGNC
Trigger: GCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAATTCTTATGGAAAACTaGTTTTCCATGCCCAGAAAC +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLILMEN*FSMPRN
Trigger: GTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAAT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGCCACTGGCTCTAAGCTaGGCATATTCTGAGTTATTC +
Preference number: 2 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLPLALS*AYSELF
Trigger: GAATAACTCAGAATATGCCCAGCTTAGAGCCAGTGG...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCCCACTGGCTCTAAGCTaGGCATATTCTGAGTTATTC +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILPLALS*AYSELF
Trigger: GAATAACTCAGAATATGCCCAGCTTAGAGCCAGTGG...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGTATATCTCAGATATaGGTTCTGTATGTTTCAGCT +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLGISQI*VLYVSA
Trigger: AGCTGAAACATACAGAACCCATATCTGAGATATACC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTCCACAAAACAACTACTaGTCATTCCACATAATGGAG +
Preference number: 2 (lower is better)
Translates to: YYGLGILACHCPHDYVPVPQNNY*SFHIME
Trigger: CTCCATTATGTGGAATGATCAGTAGTTGTTTTGTGG...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGTGCTTCTACCTTACATaGTGCACACATACTTCAGAC +
Preference number: 2 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLCFYLT*CTHTSD
Trigger: GTCTGAAGTATGTGTGCATCATGTAAGGTAGAAGCA...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGACCCTAAAGATCCACTaGCCCTTTGAAGGGAATTAT +
Preference number: 2 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLTLKIH*PFEGNY
Trigger: ATAATTCCCTTCAAAGGGTCAGTGGATCTTTAGGGT...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCAGTCAGCCAAGTGCCTaGTTATTTACCATGTGGTTT +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILSQPSA*LFTMWF
Trigger: AAACCACATGGTAAATAAGCAGGCACTTGGCTGACT...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTACTTCTCAGTGAAATTTaGGTATCTTGGTATATCTCA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLLLSEI*VSWYIS
Trigger: TGAGATATACCAAGATACGCAAATTTCACTGAGAAG...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATTTAACCAGGAGTTGTaGTTCACTGGATTCCTGACC +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQFNQEL*FTGFLT
Trigger: GGTCAGGAATCCAGTGAAGCACAACTCCTGGTTAAA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTGCTTATTTACCATGTaGTTTTGTCCTGGATCCCTC +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILCLFTM*FCPGSL
Trigger: GAGGGATCCAGGACAAAACCACATGGTAAATAAGCA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAAATTGCCTTCAATCTTaGAATTTGCTAATGCTCCAA +
Preference number: 2 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLNCLQS*NLLMLQ
Trigger: TTGGAGCATTAGCAAATTCCAAGATTGAAGGCAATT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAACATACTTCAGACTGTaGGGGGAAGGAAACATTTCT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQTYFRL*GEGNIS
Trigger: AGAAATGTTTCCTTCCCCTCACAGTCTGAAGTATGT...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATGCTTCTACCTTACATaGTGCACACATACTTCAGAC +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQCFYLT*CTHTSD
Trigger: GTCTGAAGTATGTGTGCATCATGTAAGGTAGAAGCA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAGTCTGGATTGTAACCTaGTTTCTGGGCATAGGAATT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQVWIVT*FLGIGI
Trigger: AATTCCTATGCCCAGAAATCAGGTTACAATCCAGAC...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATATCTGTGGGGTCTGTaGTGTCTTCTACATTGGATT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQYLWGL*CLLHWI
Trigger: AATCCAATGTAGAAGACATCACAGACCCCACAGATA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCCTTATTCTTCTTCTTTaGAAAGAAGGGGAGGGAATA +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILLILLL*KEGEGI
Trigger: TATTCCCTCCCCTTCTTTTCAAAGAAGAAGAATAAG...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAGTCTGTTTCTCATCATaGCCTCATAGCAAATCCTCC +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIVCFSS*PHSKSS
Trigger: GGAGGATTTGCTATGAGGTCATGATGAGAAACAGAC...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp AGACATGCTATTTTTATTAACAAGCCACTGGCTCTAAGCTGGGCATATTCTGAGAACATATGTGGGGCATaGCAAACCACATCTGAATAT +
Preference number: 2 (lower is better)
Translates to: RHAIFINKPLALSWAYSENICGA*QTTSEY
Trigger: ATATTCAGATGTGGTTTGGCATGCCCCACATATGTT...CTCAGAATATGCCCAGCTTAGAGCCAGTGGCTTGTTAATAAAAATAGCATGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCATTGTGTGTCCTCATTaGTGCTCTTCTATTAGAACT +
Preference number: 2 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILIVCPH*CSSIRT
Trigger: AGTTCTAATAGAAGAGCAGCAATGAGGACACACAAT...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp AGACATGCTATTTTTATTAACAAGCCACTGGCTCTAAGCTGGGCATATTCTGAGGTCAAGTTAATATTATaGACTTGGGATCCTGGCATG +
Preference number: 2 (lower is better)
Translates to: RHAIFINKPLALSWAYSEVKLIL*TWDPGM
Trigger: CATGCCAGGATCCCAAGTCCATAATATTAACTTGAC...CTCAGAATATGCCCAGCTTAGAGCCAGTGGCTTGTTAATAAAAATAGCATGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAGTAGTCTGCATTGTTTaGGTGACTTTAGATACTCAG +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQVVCIV*VTLDTQ
Trigger: CTGAGTATCTAAAGTCACCCAAACAATGCAGACTAC...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATCTACATTGGATTTCTaGCCTGATTTAAAGCACCAG +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQSTLDF*PDLKHQ
Trigger: CTGGTGCTTTAAATCAGGCCAGAAATCCAATGTAGA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAATGTCATTGTCCACATaGCTATGTGCCTGTTTCAGA +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIMSLST*LCACFR
Trigger: TCTGAAACAGGCACATAGTCATGTGGACAATGACAT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TTAGCTACCAAATTCAGGTATAGACATGCTATTTTTATTAACAAGCCACTGGCTTGCCAACACCTGAATTaGAAACATATGTGGGGCATG +
Preference number: 2 (lower is better)
Translates to: LATKFRYRHAIFINKPLACQHLN*KHMWGM
Trigger: CATGCCCCACATATGTTTGCAATTCAGGTGTTGGCA...AGCCAGTGGCTTGTTAATAAAAATAGCATGTCTATACCTGAATTTGGTAGCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAAGTCAGCCAAGTGCCTaGTTATTTACCATGTGGTTT +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSISQPSA*LFTMWF
Trigger: AAACCACATGGTAAATAAGCAGGCACTTGGCTGACT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACACTCCAAGATAAACTaGAGAATGTTTGAAGGCCAC +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIHSKIN*RMFEGH
Trigger: GTGGCCTTCAAACATTCTGCAGTTTATCTTGGAGTG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACTTATTCTCCTCTCCTaGTCATTTGGTGATTGGTCA +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSILILLS*SFGDWS
Trigger: TGACCAATCACCAAATGAGCAGGAGAGGAGAATAAG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATGCTTATTTACCATGTaGTTTTGTCCTGGATCCCTC +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSICLFTM*FCPGSL
Trigger: GAGGGATCCAGGACAAAACCACATGGTAAATAAGCA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAACTTTATAATGGCTGCTaGCCAACAAAACATATGCAT +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQLYNGC*PTKHMH
Trigger: ATGCATATGTTTTGTTGGCCAGCAGCCATTATAAAG...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 90 bp TATGGTTATCACATTATGTACATGTGTCAAGTTAATATTATGGACTaGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTT +
Preference number: 2 (lower is better)
Translates to: YGYHIMYMCQVNIMD*GSWHVIVHMTMCLF
Trigger: AAACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATATTAACTTGACACATGTACATAATGTGATAACCATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 90 bp TACCTGATTAAAAGTTTGGTTATGTTCAGATTTCTTCTGTGTGTTTaGTGTGTAAGACATCCTGCTGTATTTCAGCCATCCCTGTCTTCT +
Preference number: 2 (lower is better)
Translates to: YLIKSLVMFRFLLCV*CVRHPAVFQPSLSS
Trigger: AGAAGACAGGGATGGCTGAAATACAGCAGGATGTCTTACACACAAAACACACAGAAGAAATCTGAACATAACCAAACTTTTAATCAGGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp TTAGCTACCAAATTCAGGTATAGACATGCTATTTTTATTAACAAGCCACTGGCTCCTTGTCCACCCTCATaGTCTTTCTACTTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: LATKFRYRHAIFINKPLAPCPPS*SFYFFS
Trigger: AGAAAAGAAGTAGAAAGATCATGAGGGTGGACAAGG...AGCCAGTGGCTTGTTAATAAAAATAGCATGTCTATACCTGAATTTGGTAGCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR TCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACCTAGTACATCCACATaGTCTCTCCATATCTTTTCT +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIPSTST*SLHIFS
Trigger: AGAAAAGATATGGAGAGATCATGTGGATGTACTAGG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp TTAGCTACCAAATTCAGGTATAGACATGCTATTTTTATTAACAAGCCACTGGCTAGTCAGCCAAGTGCCTaGTTATTTACCATGTGGTTT +
Preference number: 2 (lower is better)
Translates to: LATKFRYRHAIFINKPLASQPSA*LFTMWF
Trigger: AAACCACATGGTAAATAAGCAGGCACTTGGCTGACT...AGCCAGTGGCTTGTTAATAAAAATAGCATGTCTATACCTGAATTTGGTAGCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAGTCAAGTTAATATTATaGACTTGGGATCCTGGCATG +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIVKLIL*TWDPGM
Trigger: CATGCCAGGATCCCAAGTCCATAATATTAACTTGAC...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAAATTGCCTTCAATCTTaGAATTTGCTAATGCTCCAA +
Preference number: 2 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQNCLQS*NLLMLQ
Trigger: TTGGAGCATTAGCAAATTCCAAGATTGAAGGCAATT...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAGTAGTCTGCATTGTTTaGGTGACTTTAGATACTCAG +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIVVCIV*VTLDTQ
Trigger: CTGAGTATCTAAAGTCACCCAAACAATGCAGACTAC...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACTATTAGAACTTTATTaGAAATCCTCCTTGTCCACC +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSILLELY*KSSLST
Trigger: GGTGGACAAGGAGGATTTGCAATAAAGTTCTAATAG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACTGTCACTAGGAAATTaGCTTCAATCTTGGAATTTG +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSILSLGN*LQSWNL
Trigger: CAAATTCCAAGATTGAAGGCAATTTCCTAGTGACAG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACTTTATAATGGCTGCTaGCCAACAAAACATATGCAT +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSILYNGC*PTKHMH
Trigger: ATGCATATGTTTTGTTGGCCAGCAGCCATTATAAAG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAAATTGCCTTCAATCTTaGAATTTGCTAATGCTCCAA +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSINCLQS*NLLMLQ
Trigger: TTGGAGCATTAGCAAATTCCAAGATTGAAGGCAATT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACACATTGGTCACAGATaGTTAAGGTTATTAATGACT +
Preference number: 2 (lower is better)
Translates to: HILMENCFSMPRNHDLSIHIGHR*LRLLMT
Trigger: AGTCATTAATAACCTTAACCATCTGTGACCAATGTG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTCTGCTTTCCATGTGTTaGCAGCTGGCCTCTTCCAAG +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPLLSMC*QLASSK
Trigger: CTTGGAAGAGGCCAGCTGCAAACACATGGAAAGCAG...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTGACCTTGACAACTCTTaGCTTGGTCTCGCTCCCCTT +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPDLDNS*LGLAPL
Trigger: AAGGGGAGCGAGACCAAGCAAAGAGTTGTCAAGGTC...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GGGAATTATGTCACCCCCTCCTTCATTGCCTCCACCTaGTGCCTGAGACTGTCAGCTTCACTCCCTCCTTCA +
Preference number: 3 (lower is better)
Translates to: GNYVTPSFIAST*CLRLSASLPPS
Trigger: TGAAGGAGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGTGACATAATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTTGTCTCTGATTCTGTaGCCTGCCGTTGGTTCCTTT +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPLSLIL*PAVGSF
Trigger: AAAGGAACCAACGGCAGGCAACAGAATCAGAGACAA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTATGGGTGCAGGGAATaGAACCTAGGTATTTGGAGG +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPYGCRE*NLGIWR
Trigger: CCTCCAAATACCTAGGTTCAATTCCCTGCACCCATA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTATTTACCATGTGGTTTaGTCCTGGATCCCTCTAGTC +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPIYHVV*SWIPLV
Trigger: GACTAGAGGGATCCAGGACAAAACCACATGGTAAAT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp AATTATGTCACCCCCTCCTTCATTGCCTCCACCTGGTaGCTGAGACTGTCAGCTTCACTCCCTCCTTCACTT +
Preference number: 3 (lower is better)
Translates to: NYVTPSFIASTW*LRLSASLPPSL
Trigger: AAGTGAAGGAGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGTGACATAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTTCATATGCCCCATTTaGCTCCCAAATAACTGCATT +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPFICPI*LPNNCI
Trigger: AATGCAGTTATTTGGGAGCAAAATGGGGCATATGAA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGCCTCCATGTCTCCATTaGGTGCCTGGGACTGTTTAT +
Preference number: 3 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGPPCLH*VPGTVY
Trigger: ATAAACAGTCCCAGGCACCAAATGGAGACATGGAGG...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTAAATTGCCTTCAATCTaGGAATTTGCTAATGCTCCA +
Preference number: 3 (lower is better)
Translates to: TPSFIASTWCLRLSASLPKLPSI*EFANAP
Trigger: TGGAGCATTAGCAAATTCCAAGATTGAAGGCAATTT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp ACTAGGCCCTCAGTAACTCTCACCCTAAAGATCCACTaGCCCTTTGAAGGGAATTATGTCACCCCCTCCTTC +
Preference number: 3 (lower is better)
Translates to: TRPSVTLTLKIH*PFEGNYVTPSF
Trigger: GAAGGAGGGGGTGACATAATTCCCTTCAAAGGGTCAGTGGATCTTTAGGGTGAGAGTTACTGAGGGCCTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GTGTTTGCAGCTGGCCTCTTCCAAGGTTCACTGTTGTaGAGTTTAACCAGGAGTTGTGCTTCACTGGATTCC +
Preference number: 3 (lower is better)
Translates to: VFAAGLFQGSLL*SLTRSCASLDS
Trigger: GGAATCCAGTGAAGCACAACTCCTGGTTAAACTCCACAACAGTGAACCTTGGAAGAGGCCAGCTGCAAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GACTGGGTATTACAGAGTCACTCATTCTCTGCACTTTaGTCAGTGTGGGGACCCCATTCACAGCACAGAGAA +
Preference number: 3 (lower is better)
Translates to: DWVLQSHSFSAL*SVWGPHSQHRE
Trigger: TTCTCTGTGCTGTGAATGGGGTCCCCACACTGACCAAAGTGCAGAGAATGAGTGACTCTGTAATACCCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp TTCCAGTGCTCCAACTGTATTAGAACATCGAGGGCTTaGTGTAATAGGGTAGTTGGGCTCTGGTGGTGCCAT +
Preference number: 3 (lower is better)
Translates to: FQCSNCIRTSRA*CNRVVGLWWCH
Trigger: ATGGCACCACCAGAGCCCAACTACCCTATTACACCAAGCCCTCGATGTTCTAATACAGTTGGAGCACTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp CTAGAAATCCATCTAAAACTAACAGGAGTAAGGAGGTaGAGGGGCATCTCCAGGAGGAGGCAGAGATCTTGG +
Preference number: 3 (lower is better)
Translates to: LEIHLKLTGVRR*RGISRRRQRSW
Trigger: CCAAGATCTCTGCCTCCTCCTGGAGATGCCCCTCCACCTCCTTACTCCTGTTAGTTTTAGATGGATTTCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp TGGAGTTTAACCAGGAGTTGTGCTTCACTGGATTCCTaGCCCTACCTAATTATGAGGTTCCCCTCAGGTGCT +
Preference number: 3 (lower is better)
Translates to: WSLTRSCASLDS*PYLIMRFPSGA
Trigger: AGCACCTGAGGGGAACCTCATAATTAGGTAGGGTCAGGAATCCAGTGAAGCACAACTCCTGGTTAAACTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp CTGTTTATGGCACTCCAAGATAAACTGCAGAATGTTTaGAGGCCACACGGGACTGCTTTAGGGCCGAGATTC +
Preference number: 3 (lower is better)
Translates to: LFMALQDKLQNV*RPHGTALGPRF
Trigger: GAATCTCGGCCCTAAAGCAGTCCCGTGTGGCCTTCAAACATTCTGCAGTTTATCTTGGAGTGCCATAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GCCAAGTGCCTGCTTATTTACCATGTGGTTTTGTCCTaGATCCCTCTAGTCATTGTGTGTCCTCATTGCTGC +
Preference number: 3 (lower is better)
Translates to: AKCLLIYHVVLS*IPLVIVCPHCC
Trigger: GCAGCAATGAGGACACACAATGACTAGAGGGATCCAGGACAAAACCACATGGTAAATAAGCAGGCACTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp CCCAGAAACCATGATCTGTCAATAGCTCATCAGGTCTaGAGTGTCCTGAATTCCTCCCTCATGCTAGACTGT +
Preference number: 3 (lower is better)
Translates to: PRNHDLSIAHQV*SVLNSSLMLDC
Trigger: ACAGTCTAGCATGAGGGAGGAATTCAGGACACTCCAGACCTGATGAGCTATTGACAGATCATGGTTTCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATTGTCTCTGATTCTGTaGCCTGCCGTTGGTTCCTTT +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLLSLIL*PAVGSF
Trigger: AAAGGAACCAACGGCAGGCAACAGAATCAGAGACAA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAATTTACCATGTGGTTTaGTCCTGGATCCCTCTAGTC +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLIYHVV*SWIPLV
Trigger: GACTAGAGGGATCCAGGACAAAACCACATGGTAAAT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGCTGCTTTCCATGTGTTaGCAGCTGGCCTCTTCCAAG +
Preference number: 3 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLLLSMC*QLASSK
Trigger: CTTGGAAGAGGCCAGCTGCAAACACATGGAAAGCAG...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATATTACCTTCATGAGTTaGAAACTGTCAGATCCCATG +
Preference number: 3 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDITFMS*KLSDPM
Trigger: CATGGGATCTGACAGTTTCAAACTCATGAAGGTAAT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATTTCATTAAACAGACCTaGACAACTCTTTGCTTGGTC +
Preference number: 3 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDFIKQT*TTLCLV
Trigger: GACCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGAA...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGCTTTCTTGTGGATaGTCAACCATCCTTAGTGTT +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLGLSCG*STILSV
Trigger: AACACTAAGGATGGTTGACAATCCACAAGAAAGCCC...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAATAGAGAGGGCTTTCTaGTGGATTGTCAACCATCCT +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLIERAF*WIVNHP
Trigger: AGGATGGTTGACAATCCACAAGAAAGCCCTCTCTAT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGGATACAGTGGTAGTTTaGTTGCTGAGTTGTATGTCT +
Preference number: 3 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGDTVVV*LLSCMS
Trigger: AGACATACAACTCAGCAACAAAACTACCACTGTATC...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp CCTGCCGTTGGTTCCTTTTCCCATAACTGGACTGCTTaGTTGGGCCTATGTGGGAAAAGACATACTAAGTCT +
Preference number: 3 (lower is better)
Translates to: PAVGSFSHNWTA*LGLCGKRHTKS
Trigger: AGACTTAGTATGTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGTTATGGGAAAAGGAACCAACGGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp TGTGGGTCCACTAATATTTGGAGCAGGAGTTGTCTCTaGTTCTGTTGCCTGCCGTTGGTTCCTTTTCCCATA +
Preference number: 3 (lower is better)
Translates to: CGSTNIWSRSCL*FCCLPLVPFPI
Trigger: TATGGGAAAAGGAACCAACGGCAGGCAACAGAATCAGAGACAACTCCTGCTCCAAATATTAGTGGACCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp ATGGGTTCTGTATGTTTCAGCTATGGGCAGGAGCTCTaGATCCCACTTCATGTGTTCAGTATTGGGAGTGTA +
Preference number: 3 (lower is better)
Translates to: MGSVCFSYGQEL*IPLHVFSIGSV
Trigger: TACACTCCCAATACTGAACACATGAAGTGGGATGCAGAGCTCCTGCCCATAGCTGAAACATACAGAACCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp TTACAGAGTCACTCATTCTCTGCACTTTGGTCAGTGTaGGGACCCCATTCACAGCACAGAGAAATTTCTCTG +
Preference number: 3 (lower is better)
Translates to: LQSHSFSALWSV*GPHSQHREISL
Trigger: CAGAGAAATTTCTCTGTGCTGTGAATGGGGTCCCCACACTGACCAAAGTGCAGAGAATGAGTGACTCTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAACTGCTTTCCATGTGTTaGCAGCTGGCCTCTTCCAAG +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQLLSMC*QLASSK
Trigger: CTTGGAAGAGGCCAGCTGCAAACACATGGAAAGCAG...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp CCGTTGGTTCCTTTTCCCATAACTGGACTGCTTGATTaGGCCTATGTGGGAAAAGACATACTAAGTCTTTCC +
Preference number: 3 (lower is better)
Translates to: PLVPFPITGLLD*AYVGKDILSLS
Trigger: GGAAAGACTTAGTATGTCTTTTCCCACATAGGCCCAATCAAGCAGTCCAGTTATGGGAAAAGGAACCAACGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GTATATCTCAGATATGGGTTCTGTATGTTTCAGCTATaGGCAGGAGCTCTGCATCCCACTTCATGTGTTCAG +
Preference number: 3 (lower is better)
Translates to: VYLRYGFCMFQL*AGALHPTSCVQ
Trigger: CTGAACACATGAAGTGGGATGCAGAGCTCCTGCCCATAGCTGAAACATACAGAACCCATATCTGAGATATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp AGTAGAAGACTACTGCCAAAGTTGTGGGTGAGCATATaGATCTTACATGAGGGGGTAAAGTTGAGGGCTCTA +
Preference number: 3 (lower is better)
Translates to: SRRLLPKLWVSI*ILHEGVKLRAL
Trigger: TAGAGCCCTCAACTTTACCCCCTCATGTAAGATCCATATGCTCACCCACAACTTTGGCAGTAGTCTTCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTTGTCTCTGATTCTGTaGCCTGCCGTTGGTTCCTTT +
Preference number: 3 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILLSLIL*PAVGSF
Trigger: AAAGGAACCAACGGCAGGCAACAGAATCAGAGACAA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATTTCTTCTGTGTGTTTaGTGTGTAAGACATCCTGCT +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLFLLCV*CVRHPA
Trigger: AGCAGGATGTCTTACACACAAAACACACAGAAGAAA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTATTCATTAAACAGACCTaGACAACTCTTTGCTTGGTC +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLFIKQT*TTLCLV
Trigger: GACCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGAA...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp GGGTTCAGAATCAAGTGTGAGGAAGGTCAGGAGAGATaGCTAGAAATCCATCTAAAACTAACAGGAGTAAGG +
Preference number: 3 (lower is better)
Translates to: GFRIKCEEGQER*LEIHLKLTGVR
Trigger: CCTTACTCCTGTTAGTTTTAGATGGATTTCTAGCCATCTCTCCTGACCTTCCTCACACTTGATTCTGAACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TCAAGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAAAATTGCCTTCAATCTaGGAATTTGCTAATGCTCCA +
Preference number: 3 (lower is better)
Translates to: SSQFLMSLHPQRCLAYLLKLPSI*EFANAP
Trigger: TGGAGCATTAGCAAATTCCAAGATTGAAGGCAATTT...TAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGTTAGGATCAGATGTCTaGCCTTATTCTCCTCTCCTG +
Preference number: 3 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLLGSDV*PYSPLL
Trigger: CAGGAGAGGAGAATAAGGCAAGACATCTGATCCTAA...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TGGTCTAACATTCCCCCTTGCCTGTCACTAGGAAATTaGCTTCAATCTTGGAATTTGCTAATGCTCCAATCT +
Preference number: 3 (lower is better)
Translates to: WSNIPPCLSLGN*LQSWNLLMLQS
Trigger: AGATTGGAGCATTAGCAAATTCCAAGATTGAAGGCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TCCAAGTATCTGTGTGACCCATGTGGGTCCTACTATTaGTTGTATTCCAGTAAAGTAGAAGACTACTGCCAA +
Preference number: 3 (lower is better)
Translates to: SKYLCDPCGSYY*LYSSKVEDYCQ
Trigger: TTGGCAGTAGTCTTCTACTTTACTGGAATACAAGCAATAGTAGGACCCACATGGGTCACACAGATACTTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAATTTACCATGTGGTTTaGTCCTGGATCCCTCTAGTC +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQIYHVV*SWIPLV
Trigger: GACTAGAGGGATCCAGGACAAAACCACATGGTAAAT...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAGGGCTTTCTTGTGGATaGTCAACCATCCTTAGTGTT +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQGLSCG*STILSV
Trigger: AACACTAAGGATGGTTGACAATCCACAAGAAAGCCC...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp GCATTCTCCATCTACTTAACCCTCTCCAATTCACTCTaGACCAATAAAAGAGAGACCATGAGACTGTTGCAA +
Preference number: 3 (lower is better)
Translates to: AFSIYLTLSNSL*TNKRETMRLLQ
Trigger: TTGCAACAGTCTCATGGTCTCTCTTTTATTGGTTCAGAGTGAATTGGAGAGGGTTAAGTAGATGGAGAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TCCTGGATCCCTCTAGTCATTGTGTGTCCTCATTGCTaGTCTTCTATTAGAACTTTATTGCAAATCCTCCTT +
Preference number: 3 (lower is better)
Translates to: SWIPLVIVCPHC*SSIRTLLQILL
Trigger: AAGGAGGATTTGCAATAAAGTTCTAATAGAAGAGCAGCAATGAGGACACACAATGACTAGAGGGATCCAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TTGTCCTGGATCCCTCTAGTCATTGTGTGTCCTCATTaGTGCTCTTCTATTAGAACTTTATTGCAAATCCTC +
Preference number: 3 (lower is better)
Translates to: LSWIPLVIVCPH*CSSIRTLLQIL
Trigger: GAGGATTTGCAATAAAGTTCTAATAGAAGAGCAGCAATGAGGACACACAATGACTAGAGGGATCCAGGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp GAAACTCTCAACATTACTTGGTCTAACATTCCCCCTTaGCTGTCACTAGGAAATTGCCTTCAATCTTGGAAT +
Preference number: 3 (lower is better)
Translates to: ETLNITWSNIPP*LSLGNCLQSWN
Trigger: ATTCCAAGATTGAAGGCAATTTCCTAGTGACAGGCAAGGGGGAATGTTAGACCAAGTAATGTTGAGAGTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp ACATATGCATACACAACCCACATAGACCTGATTGTGTaGATTCTCCATCTACTTAACCCTCTCCAATTCACT +
Preference number: 3 (lower is better)
Translates to: TYAYTTHIDLIV*ILHLLNPLQFT
Trigger: AGTGAATTGGAGAGGGTTAAGTAGATGGAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp CTGAACTTTATAATGGCTGCTGGCCAACAAAACATATaGATACACAACCCACATAGACCTGATTGTGTGCAT +
Preference number: 3 (lower is better)
Translates to: LNFIMAAGQQNI*IHNPHRPDCVH
Trigger: ATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGCCAGCAGCCATTATAAAGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TTCAGTATTGGGAGTGTAGCTGAACTTTATAATGGCTaGTGGCCAACAAAACATATGCATACACAACCCACA +
Preference number: 3 (lower is better)
Translates to: FSIGSVAELYNG*WPTKHMHTQPT
Trigger: TGTGGGTTGTGTATGCATATGTTTTGTTGGCCAGCAGCCATTATAAAGTTCAGCTACACTCCCAATACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp TCAGTGAAATTTGCGTATCTTGGTATATCTCAGATATaGGTTCTGTATGTTTCAGCTATGGGCAGGAGCTCT +
Preference number: 3 (lower is better)
Translates to: SVKFAYLGISQI*VLYVSAMGRSS
Trigger: AGAGCTCCTGCCCATAGCTGAAACATACAGAACCCATATCTGAGATATACCAAGATACGCAAATTTCACTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp CAGCATACTACTTGTAAAGCAATAGTTCTCAATCTGTaGGTAATGACCCTTGGAGAGCACATATTTCCTCTG +
Preference number: 3 (lower is better)
Translates to: QHTTCKAIVLNL*VMTLGEHIFPL
Trigger: CAGAGGAAATATGTGCTCTCCAAGGGTCATTACCCACAGATTGAGAACTATTGCTTTACAAGTAGTATGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp TCTGTGGGGTCTGTGATGTCTTCTACATTGGATTTCTaGCCTGATTTAAAGCACCAGCATACTACTTGTAAA +
Preference number: 3 (lower is better)
Translates to: SVGSVMSSTLDF*PDLKHQHTTCK
Trigger: TTTACAAGTAGTATGCTGGTGCTTTAAATCAGGCCAGAAATCCAATGTAGAAGACATCACAGACCCCACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAACTGAGTTATTCTAACTaGACTAGGCTGCTGATAGTC +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQLSYSN*TRLLIV
Trigger: GACTATCAGCAGCCTAGTCAAGTTAGAATAACTCAG...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCGCTTATTCTTCTTCTTaGAAAAGAAGGGGAGGGAAT +
Preference number: 3 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILAYSSS*KRRGGN
Trigger: ATTCCCTCCCCTTCTTTTCAAAGAAGAAGAATAAGC...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATATGGGTGCAGGGAATaGAACCTAGGTATTTGGAGG +
Preference number: 3 (lower is better)
Translates to: HILMENCFSMPRNHDLSIYGCRE*NLGIWR
Trigger: CCTCCAAATACCTAGGTTCAATTCCCTGCACCCATA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATTTCTTCTGTGTGTTTaGTGTGTAAGACATCCTGCT +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQFLLCV*CVRHPA
Trigger: AGCAGGATGTCTTACACACAAAACACACAGAAGAAA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAATTACCTTCATGAGTTaGAAACTGTCAGATCCCATG +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQITFMS*KLSDPM
Trigger: CATGGGATCTGACAGTTTCAAACTCATGAAGGTAAT...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATTCATTAAACAGACCTaGACAACTCTTTGCTTGGTC +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQFIKQT*TTLCLV
Trigger: GACCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGAA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAAGATACAGTGGTAGTTTaGTTGCTGAGTTGTATGTCT +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQDTVVV*LLSCMS
Trigger: AGACATACAACTCAGCAACAAAACTACCACTGTATC...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp CTTCTACCTTACATGATGCACACATACTTCAGACTGTaGGGGGAAGGAAACATTTCTTTCTTATCTTCGTCA +
Preference number: 3 (lower is better)
Translates to: LLPYMMHTYFRL*GEGNISFLSSS
Trigger: TGACGAAGATAAGAAAGAAATGTTTCCTTCCCCTCACAGTCTGAAGTATGTGTGCATCATGTAAGGTAGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TGTGTCCTCATTGCTGCTCTTCTATTAGAACTTTATTaGAAATCCTCCTTGTCCACCCTCATGATCTTTCTA +
Preference number: 3 (lower is better)
Translates to: CVLIAALLLELY*KSSLSTLMIFL
Trigger: TAGAAAGATCATGAGGGTGGACAAGGAGGATTTGCAATAAAGTTCTAATAGAAGAGCAGCAATGAGGACACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp CAGATTTCTTCTGTGTGTTTTGTGTGTAAGACATCCTaGTGTATTTCAGCCATCCCTGTCTTCTTATGTACA +
Preference number: 3 (lower is better)
Translates to: QISSVCFVCKTS*CISAIPVFLCT
Trigger: TGTACATAAGAAGACAGGGATGGCTGAAATACAGCAGGATGTCTTACACACAAAACACACAGAAGAAATCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TGGTATCTTCAGCAAGAGGATTTTACTATAAAGTTCTaGTTTGTGACAAGGAGCAATGCCAGTAGTCTGCAT +
Preference number: 3 (lower is better)
Translates to: WYLQQEDFTIKF*FVTRSNASSLH
Trigger: ATGCAGACTACTGGCATTGCTCCTTGTCACAAAGCAGAACTTTATAGTAAAATCCTCTTGCTGAAGATACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp TGCTACCAATGTAGCAATGGGCATATATTACTAGGATaGTCACTGTTGTATTTCACATTGGTCACAGATGGT +
Preference number: 3 (lower is better)
Translates to: CYQCSNGHILLG*SLLYFTLVTDG
Trigger: ACCATCTGTGACCAATGTGAAATACAACAGTGAGCATCCTAGTAATATATGCCCATTGCTACATTGGTAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR GCA 72 bp CATCTTCATATGATTGGATTTACAGGATTTTTCCAGTaGTCCAACTGTATTAGAACATCGAGGGCTTGGTGT +
Preference number: 3 (lower is better)
Translates to: HLHMIGFTGFFQ*SNCIRTSRAWC
Trigger: ACACCAAGCCCTCGATGTTCTAATACAGTTGGAGCACTGGAAAAATCCTGTAAATCCAATCATATGAAGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAACATATTTACACATCATaGATACAGGAGATGCTCCAA +
Preference number: 3 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQHIYTS*IQEMLQ
Trigger: TTGGAGCATCTCCTGTATCAATGATGTGTAAATATG...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CCA 72 bp AAATGTGAAAGAAAGAAGGAAACTCTCAACATTACTTaGTCTAACATTCCCCCTTGCCTGTCACTAGGAAAT +
Preference number: 3 (lower is better)
Translates to: KCERKKETLNIT*SNIPPCLSLGN
Trigger: ATTTCCTAGTGACAGGCAAGGGGGAATGTTAGACCAAGTAATGTTGAGAGTTTCCTTCTTTCTTTCACATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp TTAGCTACCAAATTCAGGTATAGACATGCTATTTTTATTAACAAGCCACTGGCTCTGAGTTATTCTAACTaGACTAGGCTGCTGATAGTC +
Preference number: 3 (lower is better)
Translates to: LATKFRYRHAIFINKPLALSYSN*TRLLIV
Trigger: GACTATCAGCAGCCTAGTCAAGTTAGAATAACTCAG...AGCCAGTGGCTTGTTAATAAAAATAGCATGTCTATACCTGAATTTGGTAGCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR-3UTR CAA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATTCATATGCCCCATTTaGCTCCCAAATAACTGCATT +
Preference number: 3 (lower is better)
Translates to: HILMENCFSMPRNHDLSIFICPI*LPNNCI
Trigger: AATGCAGTTATTTGGGAGCAAAATGGGGCATATGAA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp TGGTTAAGGTTATTAATGACTTCTTCCTTATCATCCTaGATGCATCTCAACTACTGTAGAGTGTACCCAGAA +
Preference number: 3 (lower is better)
Translates to: WLRLLMTSSLSS*MHLNYCRVYPE
Trigger: TTCTGGGTACACTCTACAGTAGTTGAGATGCATTCAGGATGATAAGGAAGAAGTCATTAATAACCTTAACCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp TTTACATCCTATTTACCATATTACCTGAAACTTTGGTaGGGGGAATACTATAGATACCTCATTTGTGACTGG +
Preference number: 3 (lower is better)
Translates to: FTSYLPYYLKLW*GEYYRYLICDW
Trigger: CCAGTCACAAATGAGGTATCTATAGTATTCCCCTCACCAAAGTTTCAGGTAATATGGTAAATAGGATGTAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp AGTCACCTGAGTTTGGAATATTATGAGTGTAGGTGTTaGTTTATGATTATTTCTTTGATGGGTGGATGCTCT +
Preference number: 3 (lower is better)
Translates to: SHLSLEYYECRC*FMIISLMGGCS
Trigger: AGAGCATCCACCCATCAAAGAAATAATCATAAATCAACACCTACACTCATAATATTCCAAACTCAGGTGACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR TCA 72 bp TTAATTTCCTCTTTATGGGCCACTATCATCTTCATATaGTTGGATTTACAGGATTTTTCCAGTGCTCCAACT +
Preference number: 3 (lower is better)
Translates to: LISSLWATIIFI*LDLQDFSSAPT
Trigger: AGTTGGAGCACTGGAAAAATCCTGTAAATCCAATCATATGAAGATGATAGTGGCCCATAAAGAGGAAATTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTATGTTTAGAAGCAGGTaGAAAAGCCAAGAGACTAAG +
Preference number: 4 (lower is better)
Translates to: TPSFIASTWCLRLSASLPMFRSR*KSQETK
Trigger: CTTAGTCTCTTGGCTTTTCCACCTGCTTCTAAACAT...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATAAAGGGTACTCACCATaGAGACACTTGAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDKGYSP*RHLSRP
Trigger: TGGCCTGCTCAAGTGTCTCCATGGTGAGTACCCTTT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGCATTTTCCTTGGAACTaGGGCCTGACACTCTTACTG +
Preference number: 4 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGHFPWN*GLTLLL
Trigger: CAGTAAGAGTGTCAGGCCCCAGTTCCAAGGAAAATG...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATCATTTTCCTTGGAACTaGGGCCTGACACTCTTACTG +
Preference number: 4 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDHFPWN*GLTLLL
Trigger: CAGTAAGAGTGTCAGGCCCCAGTTCCAAGGAAAATG...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp TGGGTGAGCATATGGATCTTACATGAGGGGGTAAAGTaGAGGGCTCTAGAGAGGGTTTTGTGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: WVSIWILHEGVK*RALERVLCPCK
Trigger: CTTGCAAGGGCACAAAACCCTCTCTAGAGCCCTCAACTTTACCCCCTCATGTAAGATCCATATGCTCACCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp CATGTGTTTGCAGCTGGCCTCTTCCAAGGTTCACTGTaGTGGAGTTTAACCAGGAGTTGTGCTTCACTGGAT +
Preference number: 4 (lower is better)
Translates to: HVFAAGLFQGSL*WSLTRSCASLD
Trigger: ATCCAGTGAAGCACAACTCCTGGTTAAACTCCACAACAGTGAACCTTGGAAGAGGCCAGCTGCAAACACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATACTCCCACTATAATCTaGCAGAAGAGAAAAATTCCC +
Preference number: 4 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDTPTII*QKRKIP
Trigger: GGGAATTTTTCTCTTCTGCCAGATTATAGTGGGAGT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227320.2
CDS-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATATGTTTAGAAGCAGGTaGAAAAGCCAAGAGACTAAG +
Preference number: 4 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDMFRSR*KSQETK
Trigger: CTTAGTCTCTTGGCTTTTCCACCTGCTTCTAAACAT...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp ACTAGGCTGCTACGTCCCAACAAAGTGCCCCACTATTaGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCA +
Preference number: 4 (lower is better)
Translates to: TRLLRPNKVPHY*SPGLVLIDFSP
Trigger: TGGACTAAAATCAATCAGGACAAGACCAGGTGACAAATAGTGGGGCACTTTGTTGGGACGTAGCAGCCTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATTGCATGTGGCATACATaGACATACATCTTGTTATTC +
Preference number: 4 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDCMWHT*TYILLF
Trigger: GAATAACAAGATGTATGTCCATGTATGCCACATGCA...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp AGTCAGTTTCTAATGTCCCTGCACCCACAGAGGTGCTTGGCTTACCTACTAGGGAACTCAATATGCATGTaGCATACATGGACATACATC +
Preference number: 4 (lower is better)
Translates to: SQFLMSLHPQRCLAYLLGNSICM*HTWTYI
Trigger: GATGTATGTCCATGTATGCCACATGCATATTGAGTT...CCCTAGTAGGTAAGCCAAGCACCTCTGTGGGTGCAGGGACATTAGAAACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTCATTTTCCTTGGAACTaGGGCCTGACACTCTTACTG +
Preference number: 4 (lower is better)
Translates to: YYGLGILACHCPHDYVPVHFPWN*GLTLLL
Trigger: CAGTAAGAGTGTCAGGCCCCAGTTCCAAGGAAAATG...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGAAAGGGTACTCACCATaGAGACACTTGAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLKGYSP*RHLSRP
Trigger: TGGCCTGCTCAAGTGTCTCCATGGTGAGTACCCTTT...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp GACCATGAGACTGTTGCAACTAGGCCTTCTATAAATTaGGAACAGATGTACACCTTGATCTTCATGTGGGTC +
Preference number: 4 (lower is better)
Translates to: DHETVATRPSIN*EQMYTLIFMWV
Trigger: GACCCACATGAAGATCAAGGTGTACATCTGTTCCAAATTTATAGAAGGCCTAGTTGCAACAGTCTCATGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAAAAGGGTACTCACCATaGAGACACTTGAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: HILMENCFSMPRNHDLSIKGYSP*RHLSRP
Trigger: TGGCCTGCTCAAGTGTCTCCATGGTGAGTACCCTTT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp TATAGTCCAATAAACATGACAATGCCAACACCTGAATaGCAAACATATGTGGGGCATGCCAAACCACATCTG +
Preference number: 4 (lower is better)
Translates to: YSPINMTMPTPE*QTYVGHAKPHL
Trigger: CAGATGTGGTTTGGCATGCCCCACATATGTTTGCAATTCAGGTGTTGGCATTGTCATGTTTATTGGACTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp AAGTATCTGTGTGACCCATGTGGGTCCTACTATTGCTaGTATTCCAGTAAAGTAGAAGACTACTGCCAAAGT +
Preference number: 4 (lower is better)
Translates to: KYLCDPCGSYYC*YSSKVEDYCQS
Trigger: ACTTTGGCAGTAGTCTTCTACTTTACTGGAATACAAGCAATAGTAGGACCCACATGGGTCACACAGATACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTTGCATGTGGCATACATaGACATACATCTTGTTATTC +
Preference number: 4 (lower is better)
Translates to: YYGLGILACHCPHDYVPVCMWHT*TYILLF
Trigger: GAATAACAAGATGTATGTCCATGTATGCCACATGCA...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGATGTTTAGAAGCAGGTaGAAAAGCCAAGAGACTAAG +
Preference number: 4 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLMFRSR*KSQETK
Trigger: CTTAGTCTCTTGGCTTTTCCACCTGCTTCTAAACAT...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGTATATTCAGTGCCCATaGCACTGGATATTTGGAACA +
Preference number: 4 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLYIQCP*HWIFGT
Trigger: TGTTCCAAATATCCAGTGCCATGGGCACTGAATATA...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR GCA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCCGTAAATATATTCAGTaGCCATGGCACTGGATATTT +
Preference number: 4 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILRKYIQ*PWHWIF
Trigger: AAATATCCAGTGCCATGGGCACTGAATATATTTACG...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp TTTGTGACAAGGAGCAATGCCAGTAGTCTGCATTGTTaGGGTGACTTTAGATACTCAGACCAAATAATCAAG +
Preference number: 4 (lower is better)
Translates to: FVTRSNASSLHC*GDFRYSDQIIK
Trigger: CTTGATTATTTGGTCTGAGTATCTAAAGTCACCCAAACAATGCAGACTACTGGCATTGCTCCTTGTCACAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp CACATTATGTACATGTGTCAAGTTAATATTATGGACTaGGGATCCTGGCATGTCATTGTCCACATGACTATG +
Preference number: 4 (lower is better)
Translates to: HIMYMCQVNIMD*GSWHVIVHMTM
Trigger: CATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATATTAACTTGACACATGTACATAATGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp GCTGCTCTTCTATTAGAACTTTATTGCAAATCCTCCTaGTCCACCCTCATGATCTTTCTACTTCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: AALLLELYCKSS*STLMIFLLLFF
Trigger: GAAGAAAAGAAGTAGAAAGATCATGAGGGTGGACAAGGAGGATTTGCAATAAAGTTCTAATAGAAGAGCAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp TGGATGTCATATGCAAGTGAGTACATTTGTTGTGAGTaGATGAGTACAGTGCTTCAGTCAAATCTGGTAGAT +
Preference number: 4 (lower is better)
Translates to: WMSYASEYICCE*MSTVLQSNLVD
Trigger: ATCTACCAGATTTGACTGAAGCACTGTACTCATCAACTCACAACAAATGTACTCACTTGCATATGACATCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR GCA 90 bp AGACATGCTATTTTTATTAACAAGCCACTGGCTCTAAGCTGGGCATATTCTGAGTTGGCAAAAGTCAAGTaGTCTATAATCAAGTCTTTG +
Preference number: 4 (lower is better)
Translates to: RHAIFINKPLALSWAYSELAKVK*SIIKSL
Trigger: CAAAGACTTGATTATAGAGCACTTGACTTTTGCCAA...CTCAGAATATGCCCAGCTTAGAGCCAGTGGCTTGTTAATAAAAATAGCATGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227320.2
CDS-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATATATTCAGTGCCCATaGCACTGGATATTTGGAACA +
Preference number: 4 (lower is better)
Translates to: HILMENCFSMPRNHDLSIYIQCP*HWIFGT
Trigger: TGTTCCAAATATCCAGTGCCATGGGCACTGAATATA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
3UTR CAA 72 bp AAAAGTTTGGTTATGTTCAGATTTCTTCTGTGTGTTTaGTGTGTAAGACATCCTGCTGTATTTCAGCCATCC +
Preference number: 4 (lower is better)
Translates to: KSLVMFRFLLCV*CVRHPAVFQPS
Trigger: GGATGGCTGAAATACAGCAGGATGTCTTACACACAAAACACACAGAAGAAATCTGAACATAACCAAACTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR GCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACGTAAATATATTCAGTaGCCATGGCACTGGATATTT +
Preference number: 4 (lower is better)
Translates to: HILMENCFSMPRNHDLSIRKYIQ*PWHWIF
Trigger: AAATATCCAGTGCCATGGGCACTGAATATATTTACG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATAAACTCAATATGCATGTaGCATACATGGACATACATC +
Preference number: 4 (lower is better)
Translates to: HILMENCFSMPRNHDLSINSICM*HTWTYI
Trigger: GATGTATGTCCATGTATGCCACATGCATATTGAGTT...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CCA 90 bp TTAGCTACCAAATTCAGGTATAGACATGCTATTTTTATTAACAAGCCACTGGCTTATATTCAGTGCCCATaGCACTGGATATTTGGAACA +
Preference number: 4 (lower is better)
Translates to: LATKFRYRHAIFINKPLAYIQCP*HWIFGT
Trigger: TGTTCCAAATATCCAGTGCCATGGGCACTGAATATA...AGCCAGTGGCTTGTTAATAAAAATAGCATGTCTATACCTGAATTTGGTAGCTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTCATGGCACTGGATATTaGGAACAGGTCCTAATGACA +
Preference number: 5 (lower is better)
Translates to: TPSFIASTWCLRLSASLPHGTGY*EQVLMT
Trigger: TGTCATTAGGACCTGTTCCAAATATCCAGTGCCATG...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp ACCCCCTCCTTCATTGCCTCCACCTGGTGCCTGAGACTGTCAGCTTCACTCCCTTCTATAATCAAGTCTTaGGGCAGTAAATGCTTTCCA +
Preference number: 5 (lower is better)
Translates to: TPSFIASTWCLRLSASLPSIIKS*GSKCFP
Trigger: TGGAAAGCATTTACTGCCCAAAGACTTGATTATAGA...AGGGAGTGAAGCTGACAGTCTCAGGCACCAGGTGGAGGCAATGAAGGAGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227320.2
CDS-3UTR CAA 90 bp CTCCTCCTCCATGTCTCCATTTGGTGCCTGGGACTGTTTATGGCACTCCAAGATTTAGTCACATTTTCCTaGGAACTGGGGCCTGACACT +
Preference number: 5 (lower is better)
Translates to: LLLHVSIWCLGLFMALQDLVTFS*ELGPDT
Trigger: AGTGTCAGGCCCCAGTTCCAAGGAAAATGTGACTAA...ATCTTGGAGTGCCATAAACAGTCCCAGGCACCAAATGGAGACATGGAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTAAGGGGCCAATGTACTaGGTGGCTCTGTATTTAAGC +
Preference number: 5 (lower is better)
Translates to: YYGLGILACHCPHDYVPVKGPMY*VALYLS
Trigger: GCTTAAATACAGAGCCACCAAGTACATTGGCCCCTT...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGTTAGTCACATTTTCCTaGGAACTGGGGCCTGACACT +
Preference number: 5 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLLVTFS*ELGPDT
Trigger: AGTGTCAGGCCCCAGTTCCAAGGAAAATGTGACTAA...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTCATGGCACTGGATATTaGGAACAGGTCCTAATGACA +
Preference number: 5 (lower is better)
Translates to: YYGLGILACHCPHDYVPVHGTGY*EQVLMT
Trigger: TGTCATTAGGACCTGTTCCAAATATCCAGTGCCATG...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp AGACATGCTATTTTTATTAACAAGCCACTGGCTCTAAGCTGGGCATATTCTGAGAAGGGGCCAATGTACTaGGTGGCTCTGTATTTAAGC +
Preference number: 5 (lower is better)
Translates to: RHAIFINKPLALSWAYSEKGPMY*VALYLS
Trigger: GCTTAAATACAGAGCCACCAAGTACATTGGCCCCTT...CTCAGAATATGCCCAGCTTAGAGCCAGTGGCTTGTTAATAAAAATAGCATGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp GTCATATTTACCCTTTGTCCTCCCAAGTCCTCTAGAACTTCTGAAACATTCCAATTAGTCACATTTTCCTaGGAACTGGGGCCTGACACT +
Preference number: 5 (lower is better)
Translates to: VIFTLCPPKSSRTSETFQLVTFS*ELGPDT
Trigger: AGTGTCAGGCCCCAGTTCCAAGGAAAATGTGACTAA...TTGGAATGTTTCAGAAGTTCTAGAGGACTTGGGAGGACAAAGGGTAAATATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp TATTATGGACTTGGGATCCTGGCATGTCATTGTCCACATGACTATGTGCCTGTTTCTGATTGTGATGGCTaGAAAACAACTCAATATGCA +
Preference number: 5 (lower is better)
Translates to: YYGLGILACHCPHDYVPVSDCDG*KTTQYA
Trigger: TGCATATTGAGTTGTTTTCAAGCCATCACAATCAGA...AACAGGCACATAGTCATGTGGACAATGACATGCCAGGATCCCAAGTCCATAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp GCCAACAAAACATATGCATACACAACCCACATAGACCTGATTGTGTGCATTCTCTTAAGCTTCATCCACTaGAAGTTGCTGGATCTGATT +
Preference number: 5 (lower is better)
Translates to: ANKTYAYTTHIDLIVCILLSFIH*KLLDLI
Trigger: AATCAGATCCAGCAACTTCAAGTGGATGAAGCTTAA...GAGAATGCACACAATCAGGTCTATGTGGGTTGTGTATGCATATGTTTTGTTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp TTGTCACCTGGTCTTGTCCTGATTGATTTTAGTCCATGTGTATCCTCATGTCTGAGCCAAAATATGACATaGTCCTTGGAATGTCTCTTA +
Preference number: 5 (lower is better)
Translates to: LSPGLVLIDFSPCVSSCLSQNMT*SLECLL
Trigger: TAAGAGACATTCCAAGGACAATGTCATATTTTGGCT...CAGACATGAGGATACACATGGACTAAAATCAATCAGGACAAGACCAGGTGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227320.2
CDS-3UTR CAA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATACATGGCACTGGATATTaGGAACAGGTCCTAATGACA +
Preference number: 5 (lower is better)
Translates to: HILMENCFSMPRNHDLSIHGTGY*EQVLMT
Trigger: TGTCATTAGGACCTGTTCCAAATATCCAGTGCCATG...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS TCA 90 bp TTAAGCTTCATCCACTTGAAGTTGCTGGATCTGATTGTGATGGCTTaGAAACAACTCAATATGCATGTGGCATACATGGACATACATCTT +
Preference number: 5 (lower is better)
Translates to: LSFIHLKLLDLIVMA*KQLNMHVAYMDIHL
Trigger: AAGATGTATGTCCATGTATGCCACATGCATATTGAGTTGTTTTCAAGCCATCACAATCAGATCCAGCAACTTCAAGTGGATGAAGCTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CCA 90 bp AAAGCATATTTCTATCAACGTAAATATATTCAGTGCCCATGGCACTaGATATTTGGAACAGGTCCTAATGACAGCAACAAGGGAAGACAA +
Preference number: 5 (lower is better)
Translates to: KAYFYQRKYIQCPWH*IFGTGPNDSNKGRQ
Trigger: TTGTCTTCCCTTGTTGCTGTCATTAGGACCTGTTCCAAATATCCAGTGCCATGGGCACTGAATATATTTACGTTGATAGAAATATGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS-3UTR CAA 90 bp CATATTCTTATGGAAAACTGCTTTTCCATGCCCAGAAACCATGATCTGTCAATATCTGATTGTGATGGCTaGAAAACAACTCAATATGCA +
Preference number: 5 (lower is better)
Translates to: HILMENCFSMPRNHDLSISDCDG*KTTQYA
Trigger: TGCATATTGAGTTGTTTTCAAGCCATCACAATCAGA...TATTGACAGATCATGGTTTCTGGGCATGGAAAAGCAGTTTTCCATAAGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CAA 90 bp AGCAGGTGGAAAAGCCAAGAGACTAAGCAGAAGGGGCCAATGTACTaGGTGGCTCTGTATTTAAGCTTCATCCACTTGAAGTTGCTGGAT +
Preference number: 6 (lower is better)
Translates to: SRWKSQETKQKGPMY*VALYLSFIHLKLLD
Trigger: ATCCAGCAACTTCAAGTGGATGAAGCTTAAATACAGAGCCACCAAGTACATTGGCCCCTTCTGCTTAGTCTCTTGGCTTTTCCACCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS TCA 72 bp AAAGGGTACTCACCATGGAGACACTTGAGCAGGCCATaGGACTTAGACATAAGACATCTGAGAAGCACAATA +
Preference number: 6 (lower is better)
Translates to: KGYSPWRHLSRP*DLDIRHLRSTI
Trigger: TATTGTGCTTCTCAGATGTCTTATGTCTAAGTCTCATGGCCTGCTCAAGTGTCTCCATGGTGAGTACCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CAA 72 bp AAAAGCCAAGAGACTAAGCAGAAGGGGCCAATGTACTaGGTGGCTCTGTATTTAAGCTTCATCCACTTGAAG +
Preference number: 6 (lower is better)
Translates to: KSQETKQKGPMY*VALYLSFIHLK
Trigger: CTTCAAGTGGATGAAGCTTAAATACAGAGCCACCAAGTACATTGGCCCCTTCTGCTTAGTCTCTTGGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS TCA 72 bp ATCCACTTGAAGTTGCTGGATCTGATTGTGATGGCTTaGAAACAACTCAATATGCATGTGGCATACATGGAC +
Preference number: 6 (lower is better)
Translates to: IHLKLLDLIVMA*KQLNMHVAYMD
Trigger: GTCCATGTATGCCACATGCATATTGAGTTGTTTTCAAGCCATCACAATCAGATCCAGCAACTTCAAGTGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CAA 72 bp CATCCACTTGAAGTTGCTGGATCTGATTGTGATGGCTaGAAAACAACTCAATATGCATGTGGCATACATGGA +
Preference number: 6 (lower is better)
Translates to: HPLEVAGSDCDG*KTTQYACGIHG
Trigger: TCCATGTATGCCACATGCATATTGAGTTGTTTTCAAGCCATCACAATCAGATCCAGCAACTTCAAGTGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CCA 72 bp TTCTATCAACGTAAATATATTCAGTGCCCATGGCACTaGATATTTGGAACAGGTCCTAATGACAGCAACAAG +
Preference number: 6 (lower is better)
Translates to: FYQRKYIQCPWH*IFGTGPNDSNK
Trigger: CTTGTTGCTGTCATTAGGACCTGTTCCAAATATCCAGTGCCATGGGCACTGAATATATTTACGTTGATAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CCA 72 bp GCATATTTCTATCAACGTAAATATATTCAGTGCCCATaGCACTGGATATTTGGAACAGGTCCTAATGACAGC +
Preference number: 6 (lower is better)
Translates to: AYFYQRKYIQCP*HWIFGTGPNDS
Trigger: GCTGTCATTAGGACCTGTTCCAAATATCCAGTGCCATGGGCACTGAATATATTTACGTTGATAGAAATATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CAA 90 bp TATGACATTGTCCTTGGAATGTCTCTTAAGATGATAGTCAAGCAGTaGGCAAAAGTCAAGTGCTCTATAATCAAGTCTTTGGGCAGTAAA +
Preference number: 6 (lower is better)
Translates to: YDIVLGMSLKMIVKQ*AKVKCSIIKSLGSK
Trigger: TTTACTGCCCAAAGACTTGATTATAGAGCACTTGACTTTTGCCAACTGCTTGACTATCATCTTAAGAGACATTCCAAGGACAATGTCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164446.2
ENSMUST00000227320.2
CDS GCA 72 bp CTTAAGATGATAGTCAAGCAGTTGGCAAAAGTCAAGTaGTCTATAATCAAGTCTTTGGGCAGTAAATGCTTT +
Preference number: 6 (lower is better)
Translates to: LKMIVKQLAKVK*SIIKSLGSKCF
Trigger: AAAGCATTTACTGCCCAAAGACTTGATTATAGAGCACTTGACTTTTGCCAACTGCTTGACTATCATCTTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164446.2
ENSMUST00000227320.2
CDS CAA 72 bp TTTCTGAAAGTGTTGAGCACTGTGAATATTCCTAACTaGTCTCTTATGTTTGTAAAGGGTACTCACCATGGA +
Preference number: 6 (lower is better)
Translates to: FLKVLSTVNIPN*SLMFVKGTHHG
Trigger: TCCATGGTGAGTACCCTTTACAAACATAAGAGACAAGTTAGGAATATTCACAGTGCTCAACACTTTCAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CAA 90 bp CTCTTACCAAAGCACGGTAAAAACAGGCTAAAATTGAACTTCATATaGGTGATGAGAACAAAGGGACAAACTACTGGAAAGCATATTTCT +
Preference number: 6 (lower is better)
Translates to: LLPKHGKNRLKLNFI*VMRTKGQTTGKHIS
Trigger: AGAAATATGCTTTCCAGTAGTTTGTCCCTTTGTTCTCATCACCAATATGAAGTTCAATTTTAGCCTGTTTTTACCGTGCTTTGGTAAGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000164446.2
ENSMUST00000226525.2
ENSMUST00000227320.2
ENSMUST00000228213.2
CDS CCA 72 bp AATATTGAGAAATTGCCAAGCACTCCCACTATAATCTaGCAGAAGAGAAAAATTCCCATTGTAACGTTTTCA +
Preference number: 6 (lower is better)
Translates to: NIEKLPSTPTII*QKRKIPIVTFS
Trigger: TGAAAACGTTACAATGGGAATTTTTCTCTTCTGCCAGATTATAGTGGGAGTGCTTGGCAATTTCTCAATATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164446.2
ENSMUST00000227320.2
CDS CAA 72 bp CAGTTGGCAAAAGTCAAGTGCTCTATAATCAAGTCTTaGGGCAGTAAATGCTTTCCAATGAATATCAAAATG +
Preference number: 6 (lower is better)
Translates to: QLAKVKCSIIKS*GSKCFPMNIKM
Trigger: CATTTTGATATTCATTGGAAAGCATTTACTGCCCAAAGACTTGATTATAGAGCACTTGACTTTTGCCAACTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164446.2
ENSMUST00000227320.2