RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R73 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051687

Ensembl transcript IDs: ENSMUST00000055070.2, ENSMUST00000226516.2

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTAGCTACAGTTCCACAGGATCCAAAGCACTCTTCTCGCCTCTGTaGGCAGCAGATCTGTATAGTGTGGACATACACACACTTAAGCAC +
Preference number: 1 (lower is better)
Translates to: CSYSSTGSKALFSPL*AADLYSVDIHTLKH
Trigger: GTGCTTAAGTGTGTGTATGTCCACACTATACAGATCTGCTGCCCACAGAGGCGAGAAGAGTGCTTTGGATCCTGTGGAACTGTAGCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 90 bp TTCTACCACCACGAAAGCATCTCCCCAACTGCTTCTAGCTTTCCATaGTGGAATTTACCTTCAGACTATGGAGTGAAAGAAACTGACCCA +
Preference number: 1 (lower is better)
Translates to: FYHHESISPTASSFP*WNLPSDYGVKETDP
Trigger: TGGGTCAGTTTCTTTCACTCCATAGTCTGAAGGTAAATTCCATCATGGAAAGCTAGAAGCAGTTGGGGAGATGCTTTCGTGGTGGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 90 bp CTCAGATTCCCAGGGTGTGGACAATGCAGTGGTAGAATGTTTTCCTaGCAAATGTGTTGCCATAGGAAATTTATACAGGCAACTATTTAC +
Preference number: 1 (lower is better)
Translates to: LRFPGCGQCSGRMFS*QMCCHRKFIQATIY
Trigger: GTAAATAGTTGCCTGTATAAATTTCCTATGGCAACACATTTGTCAGGAAAACATTCTACCACTGCATTGTCCACACCCTGGGAATCTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 90 bp GATCTTGCAAATAAACTGATTTCTGTTCTAAGCAACTACATTGACTaGTATGTCACTGCCTGTAGCTACAGTTCCACAGGATCCAAAGCA +
Preference number: 1 (lower is better)
Translates to: DLANKLISVLSNYID*YVTACSYSSTGSKA
Trigger: TGCTTTGGATCCTGTGGAACTGTAGCTACAGGCAGTGACATATCAGTCAATGTAGTTGCTTAGAACAGAAATCAGTTTATTTGCAAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 90 bp CTGCTTCTAGCTTTCCATGATGGAATTTACCTTCAGACTATGGAGTaGAAGAAACTGACCCATTCTTTAAATTGGCTTTGTCAAGGAACA +
Preference number: 1 (lower is better)
Translates to: LLLAFHDGIYLQTME*KKLTHSLNWLCQGT
Trigger: TGTTCCTTGACAAAGCCAATTTAAAGAATGGGTCAGTTTCTTTCACTCCATAGTCTGAAGGTAAATTCCATCATGGAAAGCTAGAAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR GCA 90 bp TATTTTGAAGAACTTTCTAGAAAGTTAAAGTTACAGTACATGGCATaGAGGAGAGAAGGGAGGACTATCTCATGCATAGAGATAGTCATG +
Preference number: 1 (lower is better)
Translates to: YFEELSRKLKLQYMA*RREGRTISCIEIVM
Trigger: CATGACTATCTCTATGCATGAGATAGTCCTCCCTTCTCTCCTGCATGCCATGTACTGTAACTTTAACTTTCTAGAAAGTTCTTCAAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR GCA 90 bp AAACAAGACCTTGGAGCTTGGGAGCTAGCTCAATATTTAAAATCATaGAATGATCTTGCAAATAAACTGATTTCTGTTCTAAGCAACTAC +
Preference number: 1 (lower is better)
Translates to: KQDLGAWELAQYLKS*NDLANKLISVLSNY
Trigger: GTAGTTGCTTAGAACAGAAATCAGTTTATTTGCAAGATCATTGCATGATTTTAAATATTGAGCTAGCTCCCAAGCTCCAAGGTCTTGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp TACATAGTGTTAGATATCCCCTCCCTCACACTCCACCTGCATCCATGTTTACAGGGAAGATGGTACTTATaGTTTGGTAGTGCCCTGGTT +
Preference number: 2 (lower is better)
Translates to: YIVLDIPSLTLHLHPCLQGRWYL*FGSALV
Trigger: AACCAGGGCACTACCAAACCATAAGTACCATCTTCC...CTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTAACACTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATTCACTGTTTAAACATACCTCATGCTTCTACCACCACGAAAGCATCTCCCCAATGGAAGCAAAATGAATaGAATGAGCCCCAGGGCTGT +
Preference number: 2 (lower is better)
Translates to: IHCLNIPHASTTTKASPQWKQNE*NEPQGC
Trigger: ACAGCCCTGGGGCTCATTTCATTCATTTTGCTTCCA...TTGGGGAGATGCTTTCGTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp TACATAGTGTTAGATATCCCCTCCCTCACACTCCACCTGCATCCATGTTTACAGCAAGACCTTGGAGCTTaGGAGCTAGCTCAATATTTA +
Preference number: 2 (lower is better)
Translates to: YIVLDIPSLTLHLHPCLQQDLGA*ELAQYL
Trigger: TAAATATTGAGCTAGCTCCCAAGCTCCAAGGTCTTG...CTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTAACACTATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAAGTGTATGGTGTCTTTaGCAAGAGGGTCTTGCCATG +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATSVWCL*QEGLAM
Trigger: CATGGCAAGACCCTCTTGTCAAAGACACCATACACT...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACACATTCATTGTGTTCATaGAGCCTGCAAAGCCCCCTA +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATHSLCS*SLQSPL
Trigger: TAGGGGGCTTTGCAGGCTTCATGAACACAATGAATG...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAAGCAACTACATTGACTaGTATGTCACTGCCTGTAGC +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATSNYID*YVTACS
Trigger: GCTACAGGCAGTGACATATCAGTCAATGTAGTTGCT...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR GCA 90 bp ATTCACTGTTTAAACATACCTCATGCTTCTACCACCACGAAAGCATCTCCCCAAATTATCATTCATGGCTaGTCTTCCAGAGTTCCAGTG +
Preference number: 2 (lower is better)
Translates to: IHCLNIPHASTTTKASPQIIIHG*SSRVPV
Trigger: CACTGGAACTCTGGAAGAGCAGCCATGAATGATAAT...TTGGGGAGATGCTTTCGTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR GCA 90 bp TACATAGTGTTAGATATCCCCTCCCTCACACTCCACCTGCATCCATGTTTACAGTTGAGGGTTTGCATATaGACATTTGATTTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: YIVLDIPSLTLHLHPCLQLRVCI*TFDLCV
Trigger: CACACACAAATCAAATGTGCATATGCAAACCCTCAA...CTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTAACACTATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR GCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAAGAGCAAGCCCCAAATaGAACTGGAAAGTGACTGAT +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATRASPK*NWKVTD
Trigger: ATCAGTCACTTTCCAGTTGCATTTGGGGCTTGCTCT...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp ATTCACTGTTTAAACATACCTCATGCTTCTACCACCACGAAAGCATCTCCCCAAAGCAGAGATGACACTTaGAACCGTGTAGTTTCTACA +
Preference number: 2 (lower is better)
Translates to: IHCLNIPHASTTTKASPQSRDDT*NRVVST
Trigger: TGTAGAAACTACACGGTTCCAAGTGTCATCTCTGCT...TTGGGGAGATGCTTTCGTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CAA 90 bp CAAATACTCGGAAATATATGTTTTCTAATAGTCAGGATCCACAGATaGAGAACCACTGCTGTAGAGCAAGCCCCAAATGCAACTGGAAAG +
Preference number: 2 (lower is better)
Translates to: QILGNICFLIVRIHR*RTTAVEQAPNATGK
Trigger: CTTTCCAGTTGCATTTGGGGCTTGCTCTACAGCAGTGGTTCTCAATCTGTGGATCCTGACTATTAGAAAACATATATTTCCGAGTATTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAGGTAGAATGTTTTCCTaGCAAATGTGTTGCCATAGG +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATGRMFS*QMCCHR
Trigger: CCTATGGCAACACATTTGTCAGGAAAACATTCTACC...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR TCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAGCTTCTAGCTTTCCATaGTGGAATTTACCTTCAGAC +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATASSFP*WNLPSD
Trigger: GTCTGAAGGTAAATTCCATCATGGAAAGCTAGAAGC...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp TACATAGTGTTAGATATCCCCTCCCTCACACTCCACCTGCATCCATGTTTACAGACCCATTCTTTAAATTaGCTTTGTCAAGGAACAAGA +
Preference number: 2 (lower is better)
Translates to: YIVLDIPSLTLHLHPCLQTHSLN*LCQGTR
Trigger: TCTTGTTCCTTGACAAAGCCAATTTAAAGAATGGGT...CTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTAACACTATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR GCA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGCACACTCTAGAAAATTaGAGACTACTTGACCCATTT +
Preference number: 2 (lower is better)
Translates to: LVIVTLPCSHESEGILQRHTLEN*RLLDPF
Trigger: AAATGGGTCAAGTAGTCTGCAATTTTCTAGAGTGTG...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGAAACCAACTGGAAGATaGTACTTATGGTTTGGTAGT +
Preference number: 2 (lower is better)
Translates to: LVIVTLPCSHESEGILQRKPTGR*YLWFGS
Trigger: ACTACCAAACCATAAGTACCATCTTCCAGTTGGTTT...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACACATGCATATCACAATTaGTCTTTTTGTGGATACCCT +
Preference number: 2 (lower is better)
Translates to: ILANATFTAKTTVIPQATHAYHN*SFCGYP
Trigger: AGGGTATCCACAAAAAGACCAATTGTGATATGCATG...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CCA 72 bp AGTTCCACAGGATCCAAAGCACTCTTCTCGCCTCTGTaGGCAGCAGATCTGTATAGTGTGGACATACACACA +
Preference number: 3 (lower is better)
Translates to: SSTGSKALFSPL*AADLYSVDIHT
Trigger: TGTGTGTATGTCCACACTATACAGATCTGCTGCCCACAGAGGCGAGAAGAGTGCTTTGGATCCTGTGGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CAA 90 bp CTACAGTTCCACAGGATCCAAAGCACTCTTCTCGCCTCTGTGGGCAGCAGATCTAGCTCTCCAGGTATTTaGTACATGAGGTACACAATA +
Preference number: 3 (lower is better)
Translates to: LQFHRIQSTLLASVGSRSSSPGI*YMRYTI
Trigger: TATTGTGTACCTCATGTACAAAATACCTGGAGAGCT...AGATCTGCTGCCCACAGAGGCGAGAAGAGTGCTTTGGATCCTGTGGAACTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 72 bp CACGAAAGCATCTCCCCAACTGCTTCTAGCTTTCCATaGTGGAATTTACCTTCAGACTATGGAGTGAAAGAA +
Preference number: 3 (lower is better)
Translates to: HESISPTASSFP*WNLPSDYGVKE
Trigger: TTCTTTCACTCCATAGTCTGAAGGTAAATTCCATCATGGAAAGCTAGAAGCAGTTGGGGAGATGCTTTCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CAA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAACAAGACCTTGGAGCTaGGGAGCTAGCTCAATATTT +
Preference number: 3 (lower is better)
Translates to: ILANATFTAKTTVIPQATTRPWS*GASSIF
Trigger: AAATATTGAGCTAGCTCCCAAGCTCCAAGGTCTTGT...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR GCA 72 bp GAACTTTCTAGAAAGTTAAAGTTACAGTACATGGCATaGAGGAGAGAAGGGAGGACTATCTCATGCATAGAG +
Preference number: 3 (lower is better)
Translates to: ELSRKLKLQYMA*RREGRTISCIE
Trigger: CTCTATGCATGAGATAGTCCTCCCTTCTCTCCTGCATGCCATGTACTGTAACTTTAACTTTCTAGAAAGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CAA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGGATGGTACTTATGGTTaGGTAGTGCCCTGGTTATTT +
Preference number: 3 (lower is better)
Translates to: LVIVTLPCSHESEGILQRDGTYG*VVPWLF
Trigger: AAATAACCAGGGCACTACCAAACCATAAGTACCATC...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR-3UTR CAA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAGACCCATTCTTTAAATaGGCTTTGTCAAGGAACAAG +
Preference number: 3 (lower is better)
Translates to: ILANATFTAKTTVIPQATDPFFK*ALSRNK
Trigger: CTTGTTCCTTGACAAAGCCAATTTAAAGAATGGGTC...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR GCA 72 bp CATTTGGGTTATTGGGGTGTGCACACTCTAGAAAATTaGAGACTACTTGACCCATTTATTCTTTGCAGAAAA +
Preference number: 3 (lower is better)
Translates to: HLGYWGVHTLEN*RLLDPFILCRK
Trigger: TTTTCTGCAAAGAATAAATGGGTCAAGTAGTCTGCAATTTTCTAGAGTGTGCACACCCCAATAACCCAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR GCA 72 bp TATTATTACAGTGGTTCAGACAGAGCCAGTAGATATTaGTACCTCTACTTCTACTTCTACTTCTACTTCTAC +
Preference number: 3 (lower is better)
Translates to: YYYSGSDRASRY*YLYFYFYFYFY
Trigger: GTAGAAGTAGAAGTAGAAGTAGAAGTAGAGGTAGCAATATCTACTGGCTCTGTCTGAACCACTGTAATAATA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CCA 72 bp TCAGTTCTGAAAAGATGGCTTGGTAATTATCATTCATaGCTGCTCTTCCAGAGTTCCAGTGTTTTATTATCT +
Preference number: 3 (lower is better)
Translates to: SVLKRWLGNYHS*LLFQSSSVLLS
Trigger: AGATAATAAAACACTGGAACTCTGGAAGAGCAGCCATGAATGATAATTACCAAGCCATCTTTTCAGAACTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CCA 72 bp CTACACATGAGAAGCAATAAACAAGACCTTGGAGCTTaGGAGCTAGCTCAATATTTAAAATCATGCAATGAT +
Preference number: 3 (lower is better)
Translates to: LHMRSNKQDLGA*ELAQYLKSCND
Trigger: ATCATTGCATGATTTTAAATATTGAGCTAGCTCCCAAGCTCCAAGGTCTTGTTTATTGCTTCTCATGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 72 bp CATCCTATTTACCATGATGTTATCTGGTTTGGAGAATaGTATAGACATCCCATTTGTGACAGGGAATTAAAG +
Preference number: 3 (lower is better)
Translates to: HPIYHDVIWFGE*YRHPICDRELK
Trigger: CTTTAATTCCCTGTCACAAATGGGATGTCTATATCATTCTCCAAACCAGATAACATCATGGTAAATAGGATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CCA 72 bp CTCAGATCAAAACCTCAAGTGCATGCATATCACAATTaGTCTTTTTGTGGATACCCTATGAATTGCAATATT +
Preference number: 3 (lower is better)
Translates to: LRSKPQVHAYHN*SFCGYPMNCNI
Trigger: AATATTGCAATTCATAGGGTATCCACAAAAAGACCAATTGTGATATGCATGCACTTGAGGTTTTGATCTGAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR TCA 72 bp TTTCATATGTTCCATCTTGAAAGTGTATGGTGTCTTTaGCAAGAGGGTCTTGCCATGCATTACTTTTATTTT +
Preference number: 3 (lower is better)
Translates to: FHMFHLESVWCL*QEGLAMHYFYF
Trigger: AAAATAAAAGTAATGCATGGCAAGACCCTCTTGTCAAAGACACCATACACTTTCAAGATGGAACATATGAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR CCA 90 bp CTACAGTTCCACAGGATCCAAAGCACTCTTCTCGCCTCTGTGGGCAGCAGATCTATTCCCACTGTAGTCTaGGAGAAGAGAAAAATCCCC +
Preference number: 4 (lower is better)
Translates to: LQFHRIQSTLLASVGSRSIPTVV*EKRKIP
Trigger: GGGGATTTTTCTCTTCTCCCAGACTACAGTGGGAAT...AGATCTGCTGCCCACAGAGGCGAGAAGAGTGCTTTGGATCCTGTGGAACTGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR TCA 90 bp ATTCACTGTTTAAACATACCTCATGCTTCTACCACCACGAAAGCATCTCCCCAACACCATGGAGACACTTaGGCAGGTCATGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: IHCLNIPHASTTTKASPQHHGDT*AGHETQ
Trigger: CTGGGTCTCATGACCTGCTCAAGTGTCTCCATGGTG...TTGGGGAGATGCTTTCGTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR CCA 90 bp CTACAGTTCCACAGGATCCAAAGCACTCTTCTCGCCTCTGTGGGCAGCAGATCTCAAAGGGGCAAATTATaGGAAAGCATGTTTCCAGAA +
Preference number: 4 (lower is better)
Translates to: LQFHRIQSTLLASVGSRSQRGKL*ESMFPE
Trigger: TTCTGGAAACATGCTTTCCCATAATTTGCCCCTTTG...AGATCTGCTGCCCACAGAGGCGAGAAGAGTGCTTTGGATCCTGTGGAACTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR TCA 90 bp TTCTTTATGACTGTGAATTCACTGTTTAAACATACCTCATGCTTCTACCACCACCACAAGCCAGCCCACTaGGCAGGAGGGACCAATGTA +
Preference number: 4 (lower is better)
Translates to: FFMTVNSLFKHTSCFYHHHKPAH*AGGTNV
Trigger: TACATTGGTCCCTCCTGCTCAGTGGGCTGGCTTGTG...GTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAATTCACAGTCATAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR GCA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGATGTTTAGAAAGAGATaGACAAGCCAGCCCACTGAG +
Preference number: 4 (lower is better)
Translates to: LVIVTLPCSHESEGILQRMFRKR*TSQPTE
Trigger: CTCAGTGGGCTGGCTTGTGCATCTCTTTCTAAACAT...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CAA 72 bp GGAAATATATGTTTTCTAATAGTCAGGATCCACAGATaGAGAACCACTGCTGTAGAGCAAGCCCCAAATGCA +
Preference number: 4 (lower is better)
Translates to: GNICFLIVRIHR*RTTAVEQAPNA
Trigger: TGCATTTGGGGCTTGCTCTACAGCAGTGGTTCTCAATCTGTGGATCCTGACTATTAGAAAACATATATTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR TCA 90 bp ATGAATTTGTGTCATACCAGCTGTTCTTCATCTCCTCTCTATCTCCCTTTCTTTCTGTGGAATGCCTTTTaGGATGACAGACAAGCAGTT +
Preference number: 4 (lower is better)
Translates to: MNLCHTSCSSSPLYLPFFLWNAF*DDRQAV
Trigger: AACTGCTTGTCTGTCATCTCAAAAGGCATTCCACAG...AAAGAAAGGGAGATAGAGAGGAGATGAAGAACAGCTGGTATGACACAAATTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR GCA 90 bp TACATAGTGTTAGATATCCCCTCCCTCACACTCCACCTGCATCCATGTTTACAGTTGGCAAAAGTCAAATaGTCTATAATCACGTCTTTG +
Preference number: 4 (lower is better)
Translates to: YIVLDIPSLTLHLHPCLQLAKVK*SIITSL
Trigger: CAAAGACGTGATTATAGAGCATTTGACTTTTGCCAA...CTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTAACACTATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR GCA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAGGGGCTAATTGTGATTaGTTGGAAGCAACTCAGTAT +
Preference number: 4 (lower is better)
Translates to: ILANATFTAKTTVIPQATGANCD*LEATQY
Trigger: ATACTGAGTTGCTTCCAAGCAATCACAATTAGCCCC...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR CCA 90 bp ATGAATTTGTGTCATACCAGCTGTTCTTCATCTCCTCTCTATCTCCCTTTCTTTAGAGAATACTCACCATaGAGACACTTGAGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: MNLCHTSCSSSPLYLPFFREYSP*RHLSRS
Trigger: TGACCTGCTCAAGTGTCTCCATGGTGAGTATTCTCT...AAAGAAAGGGAGATAGAGAGGAGATGAAGAACAGCTGGTATGACACAAATTCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR TCA 90 bp AATTATCATTCATGGCTGCTCTTCCAGAGTTCCAGTGTTTTATTATCTCCCAATACTCAGTATGCACATTaGATACAGGGACATTCCCCT +
Preference number: 4 (lower is better)
Translates to: NYHSWLLFQSSSVLLSPNTQYAH*IQGHSP
Trigger: AGGGGAATGTCCCTGTATTCAATGTGCATACTGAGT...ATTGGGAGATAATAAAACACTGGAACTCTGGAAGAGCAGCCATGAATGATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR GCA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGGAGAAAAATCCCCATTaGAAAGTCTTCAGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: LVIVTLPCSHESEGILQREKNPH*KVFRSH
Trigger: ATGGCTTCTGAAGACTTTGCAATGGGGATTTTTCTC...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR CCA 90 bp CTTGTGATAGTTACCCTTCCTTGTTCACATGAGAGTGAAGGTATTTTACAGAGGCTAATTGTGATTGCTTaGAAGCAACTCAGTATGCAC +
Preference number: 4 (lower is better)
Translates to: LVIVTLPCSHESEGILQRLIVIA*KQLSMH
Trigger: GTGCATACTGAGTTGCTTCCAAGCAATCACAATTAG...CCTCTGTAAAATACCTTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS-3UTR TCA 90 bp TTCTTTATGACTGTGAATTCACTGTTTAAACATACCTCATGCTTCTACCACCACCTCTTAGTGGAATCATaGTGTTTAGAAAGAGATGCA +
Preference number: 4 (lower is better)
Translates to: FFMTVNSLFKHTSCFYHHLLVES*CLERDA
Trigger: TGCATCTCTTTCTAAACATCATGATTCCACTAAGAG...GTGGTGGTAGAAGCATGAGGTATGTTTAAACAGTGAATTCACAGTCATAAAGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
3UTR CAA 72 bp ACTCAGATCAAAACCTCAAGTGCATGCATATCACAATaGGTCTTTTTGTGGATACCCTATGAATTGCAATAT +
Preference number: 4 (lower is better)
Translates to: TQIKTSSACISQ*VFLWIPYELQY
Trigger: ATATTGCAATTCATAGGGTATCCACAAAAAGACCAATTGTGATATGCATGCACTTGAGGTTTTGATCTGAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS TCA 90 bp TCACATTTTTGTTGTACCTGGGACCTGATACTCTTAGTGGAATCATaGTGTTTAGAAAGAGATGCACAAGCCAGCCCACTGAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SHFCCTWDLILLVES*CLERDAQASPLSRR
Trigger: CCTCCTGCTCAGTGGGCTGGCTTGTGCATCTCTTTCTAAACATCATGATTCCACTAAGAGTATCAGGTCCCAGGTACAACAAAAATGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS GCA 90 bp GGAATGCCTTTTGAGATGACAGACAAGCAGTTGGCAAAAGTCAAATaGTCTATAATCACGTCTTTGGGCATTAAAGGCTTTCCAGTAGAT +
Preference number: 5 (lower is better)
Translates to: GMPFEMTDKQLAKVK*SIITSLGIKGFPVD
Trigger: ATCTACTGGAAAGCCTTTAATGCCCAAAGACGTGATTATAGAGCATTTGACTTTTGCCAACTGCTTGTCTGTCATCTCAAAAGGCATTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS-3UTR CAA 90 bp ATATTGGCAAATGCAACATTTACAGCAAAAACCACAGTGATCCCACAGGCTACAATGACAGACAAGCAGTaGGCAAAAGTCAAATGCTCT +
Preference number: 5 (lower is better)
Translates to: ILANATFTAKTTVIPQATMTDKQ*AKVKCS
Trigger: AGAGCATTTGACTTTTGCCAACTGCTTGTCTGTCAT...TGTAGCCTGTGGGATCACTGTGGTTTTTGCTGTAAATGTTGCATTTGCCAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS TCA 90 bp GTTGGGGCTAATTGTGATTGCTTGGAAGCAACTCAGTATGCACATTaGATACAGGGACATTCCCCTTGTTATTCGGTAAACATAGTTTAT +
Preference number: 5 (lower is better)
Translates to: VGANCDCLEATQYAH*IQGHSPCYSVNIVY
Trigger: ATAAACTATGTTTACCGAATAACAAGGGGAATGTCCCTGTATTCAATGTGCATACTGAGTTGCTTCCAAGCAATCACAATTAGCCCCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS-3UTR CAA 90 bp ATGAATTTGTGTCATACCAGCTGTTCTTCATCTCCTCTCTATCTCCCTTTCTTTAGAGAAAAATCCCCATaGCAAAGTCTTCAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: MNLCHTSCSSSPLYLPFFREKSP*QSLQKP
Trigger: TGGCTTCTGAAGACTTTGCAATGGGGATTTTTCTCT...AAAGAAAGGGAGATAGAGAGGAGATGAAGAACAGCTGGTATGACACAAATTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226516.2
CDS TCA 90 bp TTTCAGGTGAAGCATTTAGAAAGTGCTGAGAACTATGGATATATTTaGCTTGTCTCTTATGTCTGTAGAGAATACTCACCATGGAGACAC +
Preference number: 5 (lower is better)
Translates to: FQVKHLESAENYGYI*LVSYVCREYSPWRH
Trigger: GTGTCTCCATGGTGAGTATTCTCTACAGACATAAGAGACAAGTCAAATATATCCATAGTTCTCAGCACTTTCTAAATGCTTCACCTGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 90 bp GAAATCTTTAAATCCATAATTCAACAGTGTCTGTGGAATGCCTTTTaGGATGACAGACAAGCAGTTGGCAAAAGTCAAATGCTCTATAAT +
Preference number: 5 (lower is better)
Translates to: EIFKSIIQQCLWNAF*DDRQAVGKSQMLYN
Trigger: ATTATAGAGCATTTGACTTTTGCCAACTGCTTGTCTGTCATCTCAAAAGGCATTCCACAGACACTGTTGAATTATGGATTTAAAGATTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS GCA 72 bp GATACTCTTAGTGGAATCATGATGTTTAGAAAGAGATaGACAAGCCAGCCCACTGAGCAGGAGGGACCAATG +
Preference number: 6 (lower is better)
Translates to: DTLSGIMMFRKR*TSQPTEQEGPM
Trigger: CATTGGTCCCTCCTGCTCAGTGGGCTGGCTTGTGCATCTCTTTCTAAACATCATGATTCCACTAAGAGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp CATAATTCAACAGTGTCTGTGGAATGCCTTTTGAGATaGCAGACAAGCAGTTGGCAAAAGTCAAATGCTCTA +
Preference number: 6 (lower is better)
Translates to: HNSTVSVECLLR*QTSSWQKSNAL
Trigger: TAGAGCATTTGACTTTTGCCAACTGCTTGTCTGTCATCTCAAAAGGCATTCCACAGACACTGTTGAATTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp AATTGTGATTGCTTGGAAGCAACTCAGTATGCACATTaGATACAGGGACATTCCCCTTGTTATTCGGTAAAC +
Preference number: 6 (lower is better)
Translates to: NCDCLEATQYAH*IQGHSPCYSVN
Trigger: GTTTACCGAATAACAAGGGGAATGTCCCTGTATTCAATGTGCATACTGAGTTGCTTCCAAGCAATCACAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp AAATCCATAATTCAACAGTGTCTGTGGAATGCCTTTTaGGATGACAGACAAGCAGTTGGCAAAAGTCAAATG +
Preference number: 6 (lower is better)
Translates to: KSIIQQCLWNAF*DDRQAVGKSQM
Trigger: CATTTGACTTTTGCCAACTGCTTGTCTGTCATCTCAAAAGGCATTCCACAGACACTGTTGAATTATGGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS GCA 72 bp TTTGAGATGACAGACAAGCAGTTGGCAAAAGTCAAATaGTCTATAATCACGTCTTTGGGCATTAAAGGCTTT +
Preference number: 6 (lower is better)
Translates to: FEMTDKQLAKVK*SIITSLGIKGF
Trigger: AAAGCCTTTAATGCCCAAAGACGTGATTATAGAGCATTTGACTTTTGCCAACTGCTTGTCTGTCATCTCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp ATACAATGCAGCTCCCACATTTCCAAAAGTAAACCATaGGCAGTATTCATAAATCTCCCACTTAGTCACATT +
Preference number: 6 (lower is better)
Translates to: IQCSSHISKSKP*AVFINLPLSHI
Trigger: AATGTGACTAAGTGGGAGATTTATGAATACTGCTCATGGTTTACTTTTGGAAATGTGGGAGCTGCATTGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp GTGGCTCTGTTTTCAGGTGAAGCATTTAGAAAGTGCTaGGAACTATGGATATATTTGACTTGTCTCTTATGT +
Preference number: 6 (lower is better)
Translates to: VALFSGEAFRKC*ELWIYLTCLLC
Trigger: ACATAAGAGACAAGTCAAATATATCCATAGTTCTCAGCACTTTCTAAATGCTTCACCTGAAAACAGAGCCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS CAA 72 bp CAGTTGGCAAAAGTCAAATGCTCTATAATCACGTCTTaGGGCATTAAAGGCTTTCCAGTAGATATCAAAATG +
Preference number: 6 (lower is better)
Translates to: QLAKVKCSIITS*GIKGFPVDIKM
Trigger: CATTTTGATATCTACTGGAAAGCCTTTAATGCCCAAAGACGTGATTATAGAGCATTTGACTTTTGCCAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS CAA 90 bp CTTGGAAGCAACTCAGTATGCACATTGAATACAGGGACATTCCCCTaGTTATTCGGTAAACATAGTTTATTAACTTACATCCAATATCAT +
Preference number: 6 (lower is better)
Translates to: LGSNSVCTLNTGTFP*LFGKHSLLTYIQYH
Trigger: ATGATATTGGATGTAAGTTAATAAACTATGTTTACCGAATAACAAGGGGAATGTCCCTGTATTCAATGTGCATACTGAGTTGCTTCCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS TCA 72 bp AAGCATTTAGAAAGTGCTGAGAACTATGGATATATTTaGCTTGTCTCTTATGTCTGTAGAGAATACTCACCA +
Preference number: 6 (lower is better)
Translates to: KHLESAENYGYI*LVSYVCREYSP
Trigger: TGGTGAGTATTCTCTACAGACATAAGAGACAAGTCAAATATATCCATAGTTCTCAGCACTTTCTAAATGCTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2
CDS CAA 72 bp AACTCAGTATGCACATTGAATACAGGGACATTCCCCTaGTTATTCGGTAAACATAGTTTATTAACTTACATC +
Preference number: 6 (lower is better)
Translates to: NSVCTLNTGTFP*LFGKHSLLTYI
Trigger: GATGTAAGTTAATAAACTATGTTTACCGAATAACAAGGGGAATGTCCCTGTATTCAATGTGCATACTGAGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055070.2
ENSMUST00000226516.2