RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R67 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046716

Ensembl transcript IDs: ENSMUST00000055964.8, ENSMUST00000226237.2

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATCAGGCTACAGAAACTAACATAGCACCAGAGCATCCTGAAGAATaGGTTCTTGGCCATTCATGGTTTGAGTTTTCTTTCTTTTTAGAT +
Preference number: 1 (lower is better)
Translates to: NQATETNIAPEHPEE*VLGHSWFEFSFFLD
Trigger: ATCTAAAAAGAAAGAAAACTCAAACCATGAATGGCCAAGAACTCATTCTTCAGGATGCTCTGGTGCTATGTTAGTTTCTGTAGCCTGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR GCA 90 bp AAAAGCACTGAAAGCTACAATGAAAAATCCAATAACGGGAATTCTTaGTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAA +
Preference number: 1 (lower is better)
Translates to: KSTESYNEKSNNGNS*SDQSSVHFKELQTE
Trigger: TTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTTATTGGATTTTTCATTGTAGCTTTCAGTGCTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCGAGCATCCTGAAGAATaGGTTCTTGGCCATTCATGG +
Preference number: 2 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIEHPEE*VLGHSW
Trigger: CCATGAATGGCCAAGAACTCATTCTTCAGGATGCTC...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TTAAATTCTGGATCCTTCATCTGCCCATCACCTAATATTACATTTCAAGGTATGGAGCATCCTGAAGAATaGGTTCTTGGCCATTCATGG +
Preference number: 2 (lower is better)
Translates to: LNSGSFICPSPNITFQGMEHPEE*VLGHSW
Trigger: CCATGAATGGCCAAGAACTCATTCTTCAGGATGCTC...CATACCTTGAAATGTAATATTAGGTGATGGGCAGATGAAGGATCCAGAATTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCAGGAAGACTCTTGAGTaGAGTGGTCATTGTAATATC +
Preference number: 2 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIRKTLE*SGHCNI
Trigger: GATATTACAATGACCACTTCACTCAAGAGTCTTCCT...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGTCATTTTTCACATCCTaGGAGACCACAAAACTTGTT +
Preference number: 2 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGSFFTS*ETTKLV
Trigger: AACAAGTTTTGTGGTCTCTCAGGATGTGAAAAATGA...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACATTCCTACATACTTTGTaGTACCATTTTTCACTGTGG +
Preference number: 2 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTFLHTL*YHFSLW
Trigger: CCACAGTGAAAAATGGTATCACAAAGTATGTAGGAA...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGAGGATAGAATCTGCATaGAGGAGAACATGTAATCAT +
Preference number: 2 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGRIESA*RRTCNH
Trigger: ATGATTACATGTTCTCCTTCATGCAGATTCTATCCT...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACATTCTGTTTTAAATTCTaGATCCTTCATCTGCCCATC +
Preference number: 2 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTFCFKF*ILHLPI
Trigger: GATGGGCAGATGAAGGATCCAGAATTTAAAACAGAA...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCAGGATAGAATCTGCATaGAGGAGAACATGTAATCAT +
Preference number: 2 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIRIESA*RRTCNH
Trigger: ATGATTACATGTTCTCCTTCATGCAGATTCTATCCT...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCAGGAAGACTCTTGAGTaGAGTGGTCATTGTAATATC +
Preference number: 2 (lower is better)
Translates to: ILLHIFCFKFWILHLPITRKTLE*SGHCNI
Trigger: GATATTACAATGACCACTTCACTCAAGAGTCTTCCT...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR TCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCTTCCTACATACTTTGTaGTACCATTTTTCACTGTGG +
Preference number: 2 (lower is better)
Translates to: ILLHIFCFKFWILHLPITFLHTL*YHFSLW
Trigger: CCACAGTGAAAAATGGTATCACAAAGTATGTAGGAA...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CCA 90 bp GAGTTTTGTAAGTATAGGCCCAGGAATAGAAGAACTGATCAAATAGTAGTTTCAGTTCTTGGCCATTCATaGTTTGAGTTTTCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: EFCKYRPRNRRTDQIVVSVLGHS*FEFSFF
Trigger: AAAGAAAGAAAACTCAAACCATGAATGGCCAAGAAC...TGAAACTACTATTTGATCAGTTCTTCTATTCCTGGGCCTATACTTACAAAACTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CCA 90 bp AGATGTAACCATCTTTTAATAGGCATGAATCAGGCTACAGAAACTAACATAGCAGTTCTTGGCCATTCATaGTTTGAGTTTTCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: RCNHLLIGMNQATETNIAVLGHS*FEFSFF
Trigger: AAAGAAAGAAAACTCAAACCATGAATGGCCAAGAAC...TGCTATGTTAGTTTCTGTAGCCTGATTCATGCCTATTAAAAGATGGTTACATCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CAA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCGCAAAAGGAAGACTCTaGAGTGAAGTGGTCATTGTA +
Preference number: 3 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIAKGRL*SEVVIV
Trigger: TACAATGACCACTTCACTCAAGAGTCTTCCTTTTGC...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR TCA 72 bp ACAGAAACTAACATAGCACCAGAGCATCCTGAAGAATaGGTTCTTGGCCATTCATGGTTTGAGTTTTCTTTC +
Preference number: 3 (lower is better)
Translates to: TETNIAPEHPEE*VLGHSWFEFSF
Trigger: GAAAGAAAACTCAAACCATGAATGGCCAAGAACTCATTCTTCAGGATGCTCTGGTGCTATGTTAGTTTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR TCA 72 bp TCTGTACATTTCAAAGAGCTACAGACAGAACAATCATaGTGTAGCCATAGAACTTTGCTTAGGGTTCTACAC +
Preference number: 3 (lower is better)
Translates to: SVHFKELQTEQS*CSHRTLLRVLH
Trigger: GTGTAGAACCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CAA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCGCAAAAGGAAGACTCTaGAGTGAAGTGGTCATTGTA +
Preference number: 3 (lower is better)
Translates to: ILLHIFCFKFWILHLPITAKGRL*SEVVIV
Trigger: TACAATGACCACTTCACTCAAGAGTCTTCCTTTTGC...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR-3UTR CAA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCCTGAAGAATGAGTTCTaGGCCATTCATGGTTTGAGT +
Preference number: 3 (lower is better)
Translates to: ILLHIFCFKFWILHLPITLKNEF*AIHGLS
Trigger: ACTCAAACCATGAATGGCCAAGAACTCATTCTTCAG...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR GCA 72 bp GAAAGCTACAATGAAAAATCCAATAACGGGAATTCTTaGTCAGACCAAAGTTCTGTACATTTCAAAGAGCTA +
Preference number: 3 (lower is better)
Translates to: ESYNEKSNNGNS*SDQSSVHFKEL
Trigger: TAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTTATTGGATTTTTCATTGTAGCTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
3UTR GCA 72 bp TGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTaGCCATCACCTAATATTACATTTCAAGGTATGCTT +
Preference number: 3 (lower is better)
Translates to: CISSVLNSGSFI*PSPNITFQGML
Trigger: AAGCATACCTTGAAATGTAATATTAGGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGCTAGGATCTTCTGAGTaGCTCTGGATTCCGGTGAGA +
Preference number: 4 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGLGSSE*LWIPVR
Trigger: TCTCACCGGAATCCAGAGCCACTCAGAAGATCCTAG...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCTCTTCTGAGTGGCTCTaGATTCCGGTGAGATTCTGC +
Preference number: 4 (lower is better)
Translates to: FLLRPKFCTFQRATDRTISSEWL*IPVRFC
Trigger: GCAGAATCTCACCGGAATCCAGAGCCACTCAGAAGA...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAATGCCATTAGGTGCATaGGAATCAAATCTGTGGGCT +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTMPLGA*ESNLWA
Trigger: AGCCCACAGATTTGATTCTCATGCACCTAATGGCAT...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055964.8
CDS-3UTR TCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACACACTGGACCAGGCAATaGGCACAGAAAAGAAGATTT +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTHWTRQ*AQKRRF
Trigger: AAATCTTCTTTTCTGTGCTCATTGCCTGGTCCAGTG...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGGAGATGGTATAAAATaGCAGGAAGGTACACACCAG +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTGDGIK*QEGTHQ
Trigger: CTGGTGTGTACCTTCCTGGCATTTTATACCATCTCC...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAACCAGCCACCAATTGTaGTTATGCAAAAGAGCAATG +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTTSHQL*LCKRAM
Trigger: CATTGCTCTTTTGCATAATCACAATTGGTGGCTGGT...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGCACCCAATGTACTTTaGAGCATTCACCTTTTGATC +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTAPNVL*SIHLLI
Trigger: GATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGC...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp TACATCGGATTAGCAAAAGGAAGACTCTTGAGTGAAGTGGTCATTGTAATATCGGGAGATGGTATAAAATaGCAGGAAGGTACACACCAG +
Preference number: 4 (lower is better)
Translates to: YIGLAKGRLLSEVVIVISGDGIK*QEGTHQ
Trigger: CTGGTGTGTACCTTCCTGGCATTTTATACCATCTCC...CGATATTACAATGACCACTTCACTCAAGAGTCTTCCTTTTGCTAATCCGATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CCA 90 bp AGATGTAACCATCTTTTAATAGGCATGAATCAGGCTACAGAAACTAACATAGCATCTTCTGAGTGGCTCTaGATTCCGGTGAGATTCTGC +
Preference number: 4 (lower is better)
Translates to: RCNHLLIGMNQATETNIASSEWL*IPVRFC
Trigger: GCAGAATCTCACCGGAATCCAGAGCCACTCAGAAGA...TGCTATGTTAGTTTCTGTAGCCTGATTCATGCCTATTAAAAGATGGTTACATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCCTAGGATCTTCTGAGTaGCTCTGGATTCCGGTGAGA +
Preference number: 4 (lower is better)
Translates to: ILLHIFCFKFWILHLPITLGSSE*LWIPVR
Trigger: TCTCACCGGAATCCAGAGCCACTCAGAAGATCCTAG...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGATCACCCCCTCTAATTaGACAGTACTCAAAATTTCG +
Preference number: 4 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGITPSN*TVLKIS
Trigger: CGAAATTTTGAGTACTGTTCAATTAGAGGGGGTGAT...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCACCAGCCACCAATTGTaGTTATGCAAAAGAGCAATG +
Preference number: 4 (lower is better)
Translates to: FLLRPKFCTFQRATDRTITSHQL*LCKRAM
Trigger: CATTGCTCTTTTGCATAATCACAATTGGTGGCTGGT...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGGGCACAAAAGTACAATaGTTCATAAGAACGAAGGGT +
Preference number: 4 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGGTKVQ*FIRTKG
Trigger: ACCCTTCGTTCTTATGAATCATTGTACTTTTGTGCC...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGTTGGATGCCATTAGGTaGATGAGAATCAAATCTGTG +
Preference number: 4 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGLDAIR*MRIKSV
Trigger: CACAGATTTGATTCTCATGCACCTAATGGCATCCAA...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055964.8
CDS-3UTR GCA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCGCACCCAATGTACTTTaGAGCATTCACCTTTTGATC +
Preference number: 4 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIAPNVL*SIHLLI
Trigger: GATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGC...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp AACGGGAATTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACATATGCAAAAGAGCAATaGAGCCTTGTAAAACAGAGG +
Preference number: 4 (lower is better)
Translates to: NGNSCSDQSSVHFKELQTYAKEQ*SLVKQR
Trigger: CCTCTGTTTTACAAGGCTGCATTGCTCTTTTGCATA...TGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAATTCCCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CCA 90 bp TCAAAGAGCTACAGACAGAACAATCATGATGTAGCCATAGAACTTTGCTTAGGGGTAAAACAGAGGAGATaGTATAAAATGCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: SKSYRQNNHDVAIELCLGVKQRR*YKMPGR
Trigger: CCTTCCTGGCATTTTATACCATCTCCTCTGTTTTAC...CCCTAAGCAAAGTTCTATGGCTACATCATGATTGTTCTGTCTGTAGCTCTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp GAGTTTTGTAAGTATAGGCCCAGGAATAGAAGAACTGATCAAATAGTAGTTTCAACATCCAGATCAAACTaGGTCTGGGCACAAAAGTAC +
Preference number: 4 (lower is better)
Translates to: EFCKYRPRNRRTDQIVVSTSRSN*VWAQKY
Trigger: GTACTTTTGTGCCCAGACTCAGTTTGATCTGGATGT...TGAAACTACTATTTGATCAGTTCTTCTATTCCTGGGCCTATACTTACAAAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp AGATGTAACCATCTTTTAATAGGCATGAATCAGGCTACAGAAACTAACATAGCAACATCCAGATCAAACTaGGTCTGGGCACAAAAGTAC +
Preference number: 4 (lower is better)
Translates to: RCNHLLIGMNQATETNIATSRSN*VWAQKY
Trigger: GTACTTTTGTGCCCAGACTCAGTTTGATCTGGATGT...TGCTATGTTAGTTTCTGTAGCCTGATTCATGCCTATTAAAAGATGGTTACATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp TTAAATTCTGGATCCTTCATCTGCCCATCACCTAATATTACATTTCAAGGTATGCCCAGAGAGAGAAAATaGAGCACCCAATGTACTTTG +
Preference number: 4 (lower is better)
Translates to: LNSGSFICPSPNITFQGMPRERK*STQCTL
Trigger: CAAAGTACATTGGGTGCTGCATTTTCTCTCTCTGGG...CATACCTTGAAATGTAATATTAGGTGATGGGCAGATGAAGGATCCAGAATTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCCCCAGAGAGAGAAAATaGAGCACCCAATGTACTTTG +
Preference number: 4 (lower is better)
Translates to: ILLHIFCFKFWILHLPITPRERK*STQCTL
Trigger: CAAAGTACATTGGGTGCTGCATTTTCTCTCTCTGGG...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp TTAAATTCTGGATCCTTCATCTGCCCATCACCTAATATTACATTTCAAGGTATGGCAGCATTCACCTTTTaGTCCTTAAAGCAGGATTTC +
Preference number: 4 (lower is better)
Translates to: LNSGSFICPSPNITFQGMAAFTF*SLKQDF
Trigger: GAAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGC...CATACCTTGAAATGTAATATTAGGTGATGGGCAGATGAAGGATCCAGAATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCATCACCCCCTCTAATTaGACAGTACTCAAAATTTCG +
Preference number: 4 (lower is better)
Translates to: ILLHIFCFKFWILHLPITITPSN*TVLKIS
Trigger: CGAAATTTTGAGTACTGTTCAATTAGAGGGGGTGAT...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR TCA 90 bp ATATTATTGCATATCTTCTGTTTTAAATTCTGGATCCTTCATCTGCCCATCACCGGCACAAAAGTACAATaGTTCATAAGAACGAAGGGT +
Preference number: 4 (lower is better)
Translates to: ILLHIFCFKFWILHLPITGTKVQ*FIRTKG
Trigger: ACCCTTCGTTCTTATGAATCATTGTACTTTTGTGCC...GGTGATGGGCAGATGAAGGATCCAGAATTTAAAACAGAAGATATGCAATAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR GCA 90 bp GAGTTTTGTAAGTATAGGCCCAGGAATAGAAGAACTGATCAAATAGTAGTTTCATATGCAAAAGAGCAATaGAGCCTTGTAAAACAGAGG +
Preference number: 4 (lower is better)
Translates to: EFCKYRPRNRRTDQIVVSYAKEQ*SLVKQR
Trigger: CCTCTGTTTTACAAGGCTGCATTGCTCTTTTGCATA...TGAAACTACTATTTGATCAGTTCTTCTATTCCTGGGCCTATACTTACAAAACTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS CCA 90 bp GGGCACAAAAGTACAATGATTCATAAGAACGAAGGGTCCAAAGGATaGAAAACACAGAGAAGTGAGGCGAGTGATGTTCACCAGCCACCA +
Preference number: 5 (lower is better)
Translates to: GHKSTMIHKNEGSKG*KTQRSEASDVHQPP
Trigger: TGGTGGCTGGTGAACATCACTCGCCTCACTTCTCTGTGTTTTCCATCCTTTGGACCCTTCGTTCTTATGAATCATTGTACTTTTGTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS GCA 90 bp TACAAACAAGACCCAGAGAGAGAAAATGCAGCACCCAATGTACTTTaGAGCATTCACCTTTTGATCCTTAAAGCAGGATTTCCTGTGACT +
Preference number: 5 (lower is better)
Translates to: YKQDPERENAAPNVL*SIHLLILKAGFPVT
Trigger: AGTCACAGGAAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGCTGCATTTTCTCTCTCTGGGTCTTGTTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CAA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCAGAACTATCAAGGCATaGGATGCCATTAGGTGCATG +
Preference number: 5 (lower is better)
Translates to: FLLRPKFCTFQRATDRTIRTIKA*DAIRCM
Trigger: CATGCACCTAATGGCATCCAATGCCTTGATAGTTCT...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055964.8
CDS TCA 90 bp CTCAAGAGACAGGTTGTACTAACGGACACACTCCGGCCAACACTTTaGATGTACAAAATTAATCTGCATCCAAGATCATTTAAAAACTGC +
Preference number: 5 (lower is better)
Translates to: LKRQVVLTDTLRPTL*MYKINLHPRSFKNC
Trigger: GCAGTTTTTAAATGATCTTGGATGCAGATTAATTTTGTACATTCAAAGTGTTGGCCGGAGTGTGTCCGTTAGTACAACCTGTCTCTTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS TCA 90 bp CCAAGATCATTTAAAAACTGCTTTATCTCAAAAGCTGCCAATGTGTaGGGCATTCCTGTAAAGAGAACTATCAAGGCATTGGATGCCATT +
Preference number: 5 (lower is better)
Translates to: PRSFKNCFISKAANV*GIPVKRTIKALDAI
Trigger: AATGGCATCCAATGCCTTGATAGTTCTCTTTACAGGAATGCCTCACACATTGGCAGCTTTTGAGATAAAGCAGTTTTTAAATGATCTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055964.8
CDS-3UTR CAA 90 bp TTCTTGCTCAGACCAAAGTTCTGTACATTTCAAAGAGCTACAGACAGAACAATCTGCAGCATTCACCTTTaGATCCTTAAAGCAGGATTT +
Preference number: 5 (lower is better)
Translates to: FLLRPKFCTFQRATDRTICSIHL*ILKAGF
Trigger: AAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCA...GATTGTTCTGTCTGTAGCTCTTTGAAATGTACAGAACTTTGGTCTGAGCAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS-3UTR CAA 90 bp AGATGTAACCATCTTTTAATAGGCATGAATCAGGCTACAGAAACTAACATAGCATGCAGCATTCACCTTTaGATCCTTAAAGCAGGATTT +
Preference number: 5 (lower is better)
Translates to: RCNHLLIGMNQATETNIACSIHL*ILKAGF
Trigger: AAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCA...TGCTATGTTAGTTTCTGTAGCCTGATTCATGCCTATTAAAAGATGGTTACATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS CAA 90 bp GAGAGAGAAAATGCAGCACCCAATGTACTTTGCAGCATTCACCTTTaGATCCTTAAAGCAGGATTTCCTGTGACTGATGGTGATGGCTTG +
Preference number: 6 (lower is better)
Translates to: ERENAAPNVLCSIHL*ILKAGFPVTDGDGL
Trigger: CAAGCCATCACCATCAGTCACAGGAAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGCTGCATTTTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS GCA 72 bp GACCCAGAGAGAGAAAATGCAGCACCCAATGTACTTTaGAGCATTCACCTTTTGATCCTTAAAGCAGGATTT +
Preference number: 6 (lower is better)
Translates to: DPERENAAPNVL*SIHLLILKAGF
Trigger: AAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGCTGCATTTTCTCTCTCTGGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS CCA 72 bp AGTACAATGATTCATAAGAACGAAGGGTCCAAAGGATaGAAAACACAGAGAAGTGAGGCGAGTGATGTTCAC +
Preference number: 6 (lower is better)
Translates to: STMIHKNEGSKG*KTQRSEASDVH
Trigger: GTGAACATCACTCGCCTCACTTCTCTGTGTTTTCCATCCTTTGGACCCTTCGTTCTTATGAATCATTGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS CAA 72 bp AATGCAGCACCCAATGTACTTTGCAGCATTCACCTTTaGATCCTTAAAGCAGGATTTCCTGTGACTGATGGT +
Preference number: 6 (lower is better)
Translates to: NAAPNVLCSIHL*ILKAGFPVTDG
Trigger: ACCATCAGTCACAGGAAATCCTGCTTTAAGGATCAAAAGGTGAATGCTGCAAAGTACATTGGGTGCTGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS TCA 72 bp CAGGTTGTACTAACGGACACACTCCGGCCAACACTTTaGATGTACAAAATTAATCTGCATCCAAGATCATTT +
Preference number: 6 (lower is better)
Translates to: QVVLTDTLRPTL*MYKINLHPRSF
Trigger: AAATGATCTTGGATGCAGATTAATTTTGTACATTCAAAGTGTTGGCCGGAGTGTGTCCGTTAGTACAACCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS TCA 72 bp ATCCAGATCAAACTGAGTCTGGGCACAAAAGTACAATaGTTCATAAGAACGAAGGGTCCAAAGGATGGAAAA +
Preference number: 6 (lower is better)
Translates to: IQIKLSLGTKVQ*FIRTKGPKDGK
Trigger: TTTTCCATCCTTTGGACCCTTCGTTCTTATGAATCATTGTACTTTTGTGCCCAGACTCAGTTTGATCTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055964.8
ENSMUST00000226237.2
CDS TCA 72 bp TTTAAAAACTGCTTTATCTCAAAAGCTGCCAATGTGTaGGGCATTCCTGTAAAGAGAACTATCAAGGCATTG +
Preference number: 6 (lower is better)
Translates to: FKNCFISKAANV*GIPVKRTIKAL
Trigger: CAATGCCTTGATAGTTCTCTTTACAGGAATGCCTCACACATTGGCAGCTTTTGAGATAAAGCAGTTTTTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055964.8