Pregenerated sensors for VMN1R66 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043066Ensembl transcript IDs: ENSMUST00000060374.5, ENSMUST00000227719.2, ENSMUST00000228086.2, ENSMUST00000228622.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGAGGGGACCAGACCCTCCTATGGAACAAATTTATGGCCAGAAATaGTTTAAAGTTTCTTTGCTATTAGAATGTAGGATCCACAAGAAC | + |
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Preference number: 1 (lower is better) Translates to: MRGPDPPMEQIYGQK*FKVSLLLECRIHKN Trigger: GTTCTTGTGGATCCTACATTCTAATAGCAAAGAAACTTTAAATCATTTCTGGCCATAAATTTGTTCCATAGGAGGGTCTGGTCCCCTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR GCA 90 bp | ACCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCCTCTTCGTACTCCTTaGAGGCTTCTTTGCACATCC | + |
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Preference number: 2 (lower is better) Translates to: TNFTFTSFFSLSSILSFAPLRTP*RLLCTS Trigger: GGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGG...GGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | GAATGTAGGATCCACAAGAACTTTGTGAAATTCCAAAGCAGCCAATCTGCCCTGAAATCAAGGAACTACTaGGGAGTTCAATTCTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: ECRIHKNFVKFQSSQSALKSRNY*GVQFSA Trigger: TGCAGAGAATTGAACTCCTCAGTAGTTCCTTGATTT...CAGGGCAGATTGGCTGCTTTGGAATTTCACAAAGTTCTTGTGGATCCTACATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGGTAGAAAGTCAAAGCAAGGAAGGAAGTTTGGGTTTTATGGGTTTCTCCTCAAATCAAGGAACTACTaGGGAGTTCAATTCTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: TGRKSKQGRKFGFYGFLLKSRNY*GVQFSA Trigger: TGCAGAGAATTGAACTCCTCAGTAGTTCCTTGATTT...GAGGAGAAACCCATAAAACCCAAACTTCCTTCCTTGCTTTGACTTTCTACCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | CCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCAGACTCTTAAGAGTATaGCAGGACTCATACAATATG | + |
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Preference number: 2 (lower is better) Translates to: PTSPSPHSFHCPQYYPLPRLLRV*QDSYNM Trigger: CATATTGTATGAGTCCTGTCATACTCTTAAGAGTCT...GGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAGAAGTTTGGGTTTTATaGGTTTCTCCTCCTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GLHIIITTNITAKNIDVQEVWVL*VSPPPP Trigger: AGGAGGAGGAGGAGAAACCCATAAAACCCAAACTTC...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAGACCAGACCCTCCTATaGAACAAATTTATGGCCAGA | + |
|
Preference number: 2 (lower is better) Translates to: GLHIIITTNITAKNIDVQDQTLL*NKFMAR Trigger: TCTGGCCATAAATTTGTTCCATAGGAGGGTCTGGTC...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | GACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCCAAAATCAAGGAACTACTaGGGAGTTCAATTCTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: DSYNMISTFRINQLTKLPKSRNY*GVQFSA Trigger: TGCAGAGAATTGAACTCCTCAGTAGTTCCTTGATTT...TGGGAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAATCCACAAGAACTTTGTaGAATTCCAAAGCAGCCAAT | + |
|
Preference number: 2 (lower is better) Translates to: GLHIIITTNITAKNIDVQSTRTL*NSKAAN Trigger: ATTGGCTGCTTTGGAATTTCACAAAGTTCTTGTGGA...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAAGACTCTTAAGAGTATaGCAGGACTCATACAATATG | + |
|
Preference number: 2 (lower is better) Translates to: GLHIIITTNITAKNIDVQRLLRV*QDSYNM Trigger: CATATTGTATGAGTCCTGTCATACTCTTAAGAGTCT...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR CAA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACCTCCCATACTCCTTTTaGTTCCCTATAAAAATCAAG | + |
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Preference number: 3 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDLPYSF*FPIKIK Trigger: CTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR CAA 90 bp | GAATGTAGGATCCACAAGAACTTTGTGAAATTCCAAAGCAGCCAATCTGCCCTGAGCAAGGAAGGAAGTTaGGGTTTTATGGGTTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: ECRIHKNFVKFQSSQSALSKEGS*GFMGFS Trigger: GGAGAAACCCATAAAACCCAAACTTCCTTCCTTGCT...CAGGGCAGATTGGCTGCTTTGGAATTTCACAAAGTTCTTGTGGATCCTACATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR GCA 72 bp | CAATATTATCCTTTGCCCTTTCCTCTTCGTACTCCTTaGAGGCTTCTTTGCACATCCAGTAGACAAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: QYYPLPFPLRTP*RLLCTSSRQRE Trigger: TTCCCTTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAGGATAATATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR GCA 72 bp | CACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTaGCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: HLILFIVLNIIL*PFLFVLLAGFF Trigger: AAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGCAAAGAACATTGATGTACAAATACTTCTTTGGTATATGCCCAGAAGGAGACCTCAATATTATCCTTaGCCCTTTCCTCTTCGTACT | + |
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Preference number: 3 (lower is better) Translates to: TAKNIDVQILLWYMPRRRPQYYP*PFPLRT Trigger: AGTACGAAGAGGAAAGGGCAAAGGATAATATTGAGG...TCTCCTTCTGGGCATATACCAAAGAAGTATTTGTACATCAATGTTCTTTGCAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR CCA 72 bp | ATCACTGCAAAGAACATTGATGTACAAATACTTCTTTaGTATATGCCCAGAAGGAGAACAGTTGGATCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: ITAKNIDVQILL*YMPRRRTVGSN Trigger: ATTTGATCCAACTGTTCTCCTTCTGGGCATATACCAAAGAAGTATTTGTACATCAATGTTCTTTGCAGTGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | TGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAAGGGACAGGATTGTCTaGATGGCTCTGGATTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: CPFLFVLLAGFFAHPVDKRDRIV*MALDSG Trigger: CCCCGAATCCAGAGCCATCCAGACAATCCTGTCCCT...TTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | CCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAGGCAACAAGATTCTCTGTaGCTGATGGTGATGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PFPLRTPCRLLCTSSRQRQQDSL*LMVMAW Trigger: CCAAGCCATCACCATCAGTCACAGAGAATCTTGTTG...CCTTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAGGGAAGACTTTGGCTCCCCAGAGGTaGATGAGAATCAAAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LFVLLAGFFAHPVDKGKTLAPQR*MRIKAV Trigger: CACAGCTTTGATTCTCATGCACCTCTGGGGAGCCAA...AGTCTTCCCTTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACGAGCTGTGGATGTGTTaGACTCTCTTCTTATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDELWMC*TLFLCL Trigger: CAGACATAAGAAGAGAGTTCAACACATCCACAGCTC...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | ACAGGTAGAAAGTCAAAGCAAGGAAGGAAGTTTGGGTTTTATGGGTTTCTCCTCAGGGACAGGATTGTCTaGATGGCTCTGGATTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: TGRKSKQGRKFGFYGFLLRDRIV*MALDSG Trigger: CCCCGAATCCAGAGCCATCCAGACAATCCTGTCCCT...GAGGAGAAACCCATAAAACCCAAACTTCCTTCCTTGCTTTGACTTTCTACCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | TGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAACACTGGACCAGGCAATaGCCACAGAAAAGAAGATTT | + |
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Preference number: 4 (lower is better) Translates to: CPFLFVLLAGFFAHPVDKHWTRQ*PQKRRF Trigger: AAATCTTCTTTTCTGTGGTCATTGCCTGGTCCAGTG...TTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | TGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAGAGCTGTGGATGTGTTaGACTCTCTTCTTATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: CPFLFVLLAGFFAHPVDKELWMC*TLFLCL Trigger: CAGACATAAGAAGAGAGTTCAACACATCCACAGCTC...TTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACCCCAGAGAAGGAAAATaGAGAAGCCAATATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDPREGK*RSQYTL Trigger: CAAAGTATATTGGCTTCTCCATTTTCCTTCTCTGGG...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAAGGGACAGGATTGTCTaGATGGCTCTGGATTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSRDRIV*MALDSG Trigger: CCCCGAATCCAGAGCCATCCAGACAATCCTGTCCCT...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAGGAAGTCATTTAAAAACTaGTTCAACCCAAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: PFPLRTPCRLLCTSSRQRKSFKN*FNPKAA Trigger: GGCAGCTTTTGGGTTGAAGCAGTTTTTAAATGACTT...CCTTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCACGGGGGAGTTTCTTCTaGAAACCTGAGAGCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSRGSFF*KPESCG Trigger: TCCACAGCTCTCAGGTTTCCAGAAGAAACTCCCCCG...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | CCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCCAACAAGATTCTCTGTaGCTGATGGTGATGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PTSPSPHSFHCPQYYPLPQQDSL*LMVMAW Trigger: CCAAGCCATCACCATCAGTCACAGAGAATCTTGTTG...GGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACGAAGCCAATATACTTTaGAACTTTGGCTTTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDEANIL*NFGFLI Trigger: GATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTC...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | CAGGACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCAGGGACAGGATTGTCTaGATGGCTCTGGATTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: QDSYNMISTFRINQLTKLRDRIV*MALDSG Trigger: CCCCGAATCCAGAGCCATCCAGACAATCCTGTCCCT...GAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | AAGGAACTACTGAGGAGTTCAATTCTCTGCATTGAACTTTTGAGAAAGAATGTGTTGGCTCCCCAGAGGTaGATGAGAATCAAAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: KELLRSSILCIELLRKNVLAPQR*MRIKAV Trigger: CACAGCTTTGATTCTCATGCACCTCTGGGGAGCCAA...CACATTCTTTCTCAAAAGTTCAATGCAGAGAATTGAACTCCTCAGTAGTTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | ACTGCAAAGAACATTGATGTACAAATACTTCTTTGGTATATGCCCAGAAGGAGATTGGCTCCCCAGAGGTaGATGAGAATCAAAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TAKNIDVQILLWYMPRRRLAPQR*MRIKAV Trigger: CACAGCTTTGATTCTCATGCACCTCTGGGGAGCCAA...TCTCCTTCTGGGCATATACCAAAGAAGTATTTGTACATCAATGTTCTTTGCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| 3UTR CAA 72 bp | TCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTaGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SPHSFHCPQYYP*PFPLRTPCRLL Trigger: AAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | ACTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCCACTGGACCAGGCAATaGCCACAGAAAAGAAGATTT | + |
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Preference number: 4 (lower is better) Translates to: TPILLFVPYKNQGTTEEFHWTRQ*PQKRRF Trigger: AAATCTTCTTTTCTGTGGTCATTGCCTGGTCCAGTG...GAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAGAGCTGTGGATGTGTTaGACTCTCTTCTTATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSELWMC*TLFLCL Trigger: CAGACATAAGAAGAGAGTTCAACACATCCACAGCTC...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CAGGACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCTTGGCTCCCCAGAGGTaGATGAGAATCAAAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: QDSYNMISTFRINQLTKLLAPQR*MRIKAV Trigger: CACAGCTTTGATTCTCATGCACCTCTGGGGAGCCAA...GAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CAGGACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCTTCAACCCAAAAGCTaGCATTGTGTAGGGCACTCC | + |
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Preference number: 4 (lower is better) Translates to: QDSYNMISTFRINQLTKLLQPKS*HCVGHS Trigger: GGAGTGCCCTACACAATGGCAGCTTTTGGGTTGAAG...GAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | GAATGTAGGATCCACAAGAACTTTGTGAAATTCCAAAGCAGCCAATCTGCCCTGAAGTCATTTAAAAACTaGTTCAACCCAAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ECRIHKNFVKFQSSQSALKSFKN*FNPKAA Trigger: GGCAGCTTTTGGGTTGAAGCAGTTTTTAAATGACTT...CAGGGCAGATTGGCTGCTTTGGAATTTCACAAAGTTCTTGTGGATCCTACATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | AAGGAACTACTGAGGAGTTCAATTCTCTGCATTGAACTTTTGAGAAAGAATGTGCACTGGACCAGGCAATaGCCACAGAAAAGAAGATTT | + |
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Preference number: 4 (lower is better) Translates to: KELLRSSILCIELLRKNVHWTRQ*PQKRRF Trigger: AAATCTTCTTTTCTGTGGTCATTGCCTGGTCCAGTG...CACATTCTTTCTCAAAAGTTCAATGCAGAGAATTGAACTCCTCAGTAGTTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | CCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCCCCAGAGAAGGAAAATaGAGAAGCCAATATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: PTSPSPHSFHCPQYYPLPPREGK*RSQYTL Trigger: CAAAGTATATTGGCTTCTCCATTTTCCTTCTCTGGG...GGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGG 40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | ACCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCTCCGACCAAGTCTTTaGATGTACAAACTTAATCTG | + |
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Preference number: 4 (lower is better) Translates to: TNFTFTSFFSLSSILSFALRPSL*MYKLNL Trigger: CAGATTAAGTTTGTACATTCAAAGACTTGGTCGGAG...GGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCACTCCGACCAAGTCTTTaGATGTACAAACTTAATCTG | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSLRPSL*MYKLNL Trigger: CAGATTAAGTTTGTACATTCAAAGACTTGGTCGGAG...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | GACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCCACACTGGACCAGGCAATaGCCACAGAAAAGAAGATTT | + |
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Preference number: 4 (lower is better) Translates to: DSYNMISTFRINQLTKLPHWTRQ*PQKRRF Trigger: AAATCTTCTTTTCTGTGGTCATTGCCTGGTCCAGTG...TGGGAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAGAGCTGTGGATGTGTTaGACTCTCTTCTTATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: GLHIIITTNITAKNIDVQELWMC*TLFLCL Trigger: CAGACATAAGAAGAGAGTTCAACACATCCACAGCTC...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | ACTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCCCCAGAGAAGGAAAATaGAGAAGCCAATATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: TPILLFVPYKNQGTTEEFPREGK*RSQYTL Trigger: CAAAGTATATTGGCTTCTCCATTTTCCTTCTCTGGG...GAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR TCA 90 bp | ACTGCAAAGAACATTGATGTACAAATACTTCTTTGGTATATGCCCAGAAGGAGACTCCGACCAAGTCTTTaGATGTACAAACTTAATCTG | + |
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Preference number: 4 (lower is better) Translates to: TAKNIDVQILLWYMPRRRLRPSL*MYKLNL Trigger: CAGATTAAGTTTGTACATTCAAAGACTTGGTCGGAG...TCTCCTTCTGGGCATATACCAAAGAAGTATTTGTACATCAATGTTCTTTGCAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAAAGTCATTTAAAAACTaGTTCAACCCAAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSKSFKN*FNPKAA Trigger: GGCAGCTTTTGGGTTGAAGCAGTTTTTAAATGACTT...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | ACCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCAAGTCATTTAAAAACTaGTTCAACCCAAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TNFTFTSFFSLSSILSFAKSFKN*FNPKAA Trigger: GGCAGCTTTTGGGTTGAAGCAGTTTTTAAATGACTT...GGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAGAAGCCAATATACTTTaGAACTTTGGCTTTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: LPYSFLFPIKIKELLRSSEANIL*NFGFLI Trigger: GATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTC...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CCA 90 bp | GACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCCACCCAGAGAAGGAAAATaGAGAAGCCAATATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: DSYNMISTFRINQLTKLPPREGK*RSQYTL Trigger: CAAAGTATATTGGCTTCTCCATTTTCCTTCTCTGGG...TGGGAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | GACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCCAGAAGCCAATATACTTTaGAACTTTGGCTTTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: DSYNMISTFRINQLTKLPEANIL*NFGFLI Trigger: GATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTC...TGGGAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR GCA 90 bp | CAGGACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCGAAGCCAATATACTTTaGAACTTTGGCTTTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: QDSYNMISTFRINQLTKLEANIL*NFGFLI Trigger: GATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTC...GAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTCCTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACACACTAGGGACAGGATaGTCTGGATGGCTCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDTLGTG*SGWLWI Trigger: AATCCAGAGCCATCCAGACAATCCTGTCCCTAGTGT...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CTTTGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAGAGAAGTGAGGCGATaGACCATCACCAGACACCAA | + |
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Preference number: 5 (lower is better) Translates to: LCPFLFVLLAGFFAHPVDREVRR*TITRHQ Trigger: TTGGTGTCTGGTGATGGTCAATCGCCTCACTTCTCT...GTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | TGCCCTTTCCTCTTCGTACTCCTTGCAGGCTTCTTTGCACATCCAGTAGACAAAAGAGAAGTGAGGCGATaGACCATCACCAGACACCAA | + |
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Preference number: 5 (lower is better) Translates to: CPFLFVLLAGFFAHPVDKREVRR*TITRHQ Trigger: TTGGTGTCTGGTGATGGTCAATCGCCTCACTTCTCT...TTTGTCTACTGGATGTGCAAAGAAGCCTGCAAGGAGTACGAAGAGGAAAGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCAGAACTATCAAGGCATaGGCTCCCCAGAGGTGCATG | + |
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Preference number: 5 (lower is better) Translates to: PTSPSPHSFHCPQYYPLPRTIKA*APQRCM Trigger: CATGCACCTCTGGGGAGCCAATGCCTTGATAGTTCT...GGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CCAACTTCACCTTCACCTCATTCTTTTCATTGTCCTCAATATTATCCTTTGCCCACACTAGGGACAGGATaGTCTGGATGGCTCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: PTSPSPHSFHCPQYYPLPTLGTG*SGWLWI Trigger: AATCCAGAGCCATCCAGACAATCCTGTCCCTAGTGT...GGGCAAAGGATAATATTGAGGACAATGAAAAGAATGAGGTGAAGGTGAAGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | AAGGAACTACTGAGGAGTTCAATTCTCTGCATTGAACTTTTGAGAAAGAATGTGAGAACTATCAAGGCATaGGCTCCCCAGAGGTGCATG | + |
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Preference number: 5 (lower is better) Translates to: KELLRSSILCIELLRKNVRTIKA*APQRCM Trigger: CATGCACCTCTGGGGAGCCAATGCCTTGATAGTTCT...CACATTCTTTCTCAAAAGTTCAATGCAGAGAATTGAACTCCTCAGTAGTTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAACACTAGGGACAGGATaGTCTGGATGGCTCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: LPYSFLFPIKIKELLRSSTLGTG*SGWLWI Trigger: AATCCAGAGCCATCCAGACAATCCTGTCCCTAGTGT...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | CTCCCATACTCCTTTTTGTTCCCTATAAAAATCAAGGAACTACTGAGGAGTTCAAGAGAAGTGAGGCGATaGACCATCACCAGACACCAA | + |
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Preference number: 5 (lower is better) Translates to: LPYSFLFPIKIKELLRSSREVRR*TITRHQ Trigger: TTGGTGTCTGGTGATGGTCAATCGCCTCACTTCTCT...TGAACTCCTCAGTAGTTCCTTGATTTTTATAGGGAACAAAAAGGAGTATGGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAAGAACTATCAAGGCATaGGCTCCCCAGAGGTGCATG | + |
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Preference number: 5 (lower is better) Translates to: GLHIIITTNITAKNIDVQRTIKA*APQRCM Trigger: CATGCACCTCTGGGGAGCCAATGCCTTGATAGTTCT...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | GGGCTCCATATCATAATTACAACAAACATCACTGCAAAGAACATTGATGTACAAAGAGAAGTGAGGCGATaGACCATCACCAGACACCAA | + |
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Preference number: 5 (lower is better) Translates to: GLHIIITTNITAKNIDVQREVRR*TITRHQ Trigger: TTGGTGTCTGGTGATGGTCAATCGCCTCACTTCTCT...TTGTACATCAATGTTCTTTGCAGTGATGTTTGTTGTAATTATGATATGGAGCCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | ACTGCAAAGAACATTGATGTACAAATACTTCTTTGGTATATGCCCAGAAGGAGACAAAATCTAGCTTCCTaGTCATGTTTTTGCTATTCC | + |
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Preference number: 5 (lower is better) Translates to: TAKNIDVQILLWYMPRRRQNLAS*SCFCYS Trigger: GGAATAGCAAAAACATGACAAGGAAGCTAGATTTTG...TCTCCTTCTGGGCATATACCAAAGAAGTATTTGTACATCAATGTTCTTTGCAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS-3UTR CAA 90 bp | GACTCATACAATATGATCAGTACATTTAGAATCAATCAGCTGACAAAACTCCCACAAAATCTAGCTTCCTaGTCATGTTTTTGCTATTCC | + |
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Preference number: 5 (lower is better) Translates to: DSYNMISTFRINQLTKLPQNLAS*SCFCYS Trigger: GGAATAGCAAAAACATGACAAGGAAGCTAGATTTTG...TGGGAGTTTTGTCAGCTGATTGATTCTAAATGTACTGATCATATTGTATGAGTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS CCA 72 bp | TTGTCTGGATGGCTCTGGATTCGGGGGAGTTTCTTCTaGAAACCTGAGAGCTGTGGATGTGTTGAACTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LSGWLWIRGSFF*KPESCGCVELS Trigger: AGAGAGTTCAACACATCCACAGCTCTCAGGTTTCCAGAAGAAACTCCCCCGAATCCAGAGCCATCCAGACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS CCA 72 bp | AAAGCCAGAAAGAAAAACACTAGGGACAGGATTGTCTaGATGGCTCTGGATTCGGGGGAGTTTCTTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: KARKKNTRDRIV*MALDSGEFLLE Trigger: TTCCAGAAGAAACTCCCCCGAATCCAGAGCCATCCAGACAATCCTGTCCCTAGTGTTTTTCTTTCTGGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS GCA 72 bp | GTAGAAAGAACTATCAAGGCATTGGCTCCCCAGAGGTaGATGAGAATCAAAGCTGTGTGCTTTAAAGTGTAT | + |
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Preference number: 6 (lower is better) Translates to: VERTIKALAPQR*MRIKAVCFKVY Trigger: ATACACTTTAAAGCACACAGCTTTGATTCTCATGCACCTCTGGGGAGCCAATGCCTTGATAGTTCTTTCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS GCA 72 bp | CACTCCGACCAAGTCTTTGAATGTACAAACTTAATCTaGAGCCAAAGTCATTTAAAAACTGCTTCAACCCAA | + |
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Preference number: 6 (lower is better) Translates to: HSDQVFECTNLI*SQSHLKTASTQ Trigger: TTGGGTTGAAGCAGTTTTTAAATGACTTTGGCTGCAGATTAAGTTTGTACATTCAAAGACTTGGTCGGAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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| CDS CAA 72 bp | AATGGAGAAGCCAATATACTTTGCAACTTTGGCTTTTaGATCTTTACAACAAGATTCTCTGTGACTGATGGT | + |
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Preference number: 6 (lower is better) Translates to: NGEANILCNFGF*IFTTRFSVTDG Trigger: ACCATCAGTCACAGAGAATCTTGTTGTAAAGATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTCTCCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000060374.5 ENSMUST00000227719.2 ENSMUST00000228086.2 ENSMUST00000228622.2 |
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