Pregenerated sensors for VMN1R65 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066850Ensembl transcript IDs: ENSMUST00000086338.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATCAGGGTATATATAGGAAGTTTAATGAGAAACCTGGCCACCCATaGTGCATGAATATGTTAAGTGTGGCAGACGTGGAAGTTGTACAG | + |
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Preference number: 1 (lower is better) Translates to: NQGIYRKFNEKPGHP*CMNMLSVADVEVVQ Trigger: CTGTACAACTTCCACGTCTGCCACACTTAACATATTCATGCATCATGGGTGGCCAGGTTTCTCATTAAACTTCCTATATATACCCTGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| 3UTR CAA 90 bp | CTCGAATACAGGAAACTCAGTCCTTTTACAACCCACAAAGAGCGGTaGGAGACATGTCAGTTCCTGATTAGCTGCTCACTATCATCCCAG | + |
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Preference number: 2 (lower is better) Translates to: LEYRKLSPFTTHKER*ETCQFLISCSLSSQ Trigger: CTGGGATGATAGTGAGCAGCTAATCAGGAACTGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACTGAGTTTCCTGTATTCGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| 3UTR-3UTR CCA 90 bp | AGTCCTTTTACAACCCACAAAGAGCGGTTGGAGACATGTCAGTTCCTGATTAGCGCTTGGCACAAGGCATaGAAAAATACCCCAGCACAT | + |
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Preference number: 2 (lower is better) Translates to: SPFTTHKERLETCQFLISAWHKA*KNTPAH Trigger: ATGTGCTGGGGTATTTTTCCATGCCTTGTGCCAAGC...GCTAATCAGGAACTGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| 3UTR-3UTR CAA 90 bp | AGTCCTTTTACAACCCACAAAGAGCGGTTGGAGACATGTCAGTTCCTGATTAGCTGCCACGGGACAGGCTaGGCACAAGGCATGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: SPFTTHKERLETCQFLISCHGTG*AQGMEK Trigger: TTTTTCCATGCCTTGTGCCAAGCCTGTCCCGTGGCA...GCTAATCAGGAACTGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | CGATTGCAAGGGCGGCTCCTCACAGAAAAACTTCAACTGATAGCTGGGTTTGTCATTGAAACCAGAAGTTaGGCAGACCCACTTACCTTT | + |
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Preference number: 4 (lower is better) Translates to: RLQGRLLTEKLQLIAGFVIETRS*ADPLTF Trigger: AAAGGTAAGTGGGTCTGCTCAACTTCTGGTTTCAAT...GACAAACCCAGCTATCAGTTGAAGTTTTTCTGTGAGGAGCCGCCCTTGCAATCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CCA 90 bp | TTATACTCCTTCCAGTCTCAGGCTGAGATTCTCAGGGCTTGGACCCATCTTGACTATTTTGAGACAACGTaGAGATGGCTTCATTGCACA | + |
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Preference number: 4 (lower is better) Translates to: LYSFQSQAEILRAWTHLDYFETT*RWLHCT Trigger: TGTGCAATGAAGCCATCTCCACGTTGTCTCAAAATA...GTCAAGATGGGTCCAAGCCCTGAGAATCTCAGCCTGAGACTGGAAGGAGTATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CCA 90 bp | TTATACTCCTTCCAGTCTCAGGCTGAGATTCTCAGGGCTTGGACCCATCTTGACGCCAAAACTGCCATATaGTTTGGAAATGTCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LYSFQSQAEILRAWTHLDAKTAI*FGNVKK Trigger: CTTCTTGACATTTCCAAACCATATGGCAGTTTTGGC...GTCAAGATGGGTCCAAGCCCTGAGAATCTCAGCCTGAGACTGGAAGGAGTATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| 3UTR CAA 72 bp | AGGAAACTCAGTCCTTTTACAACCCACAAAGAGCGGTaGGAGACATGTCAGTTCCTGATTAGCTGCTCACTA | + |
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Preference number: 4 (lower is better) Translates to: RKLSPFTTHKER*ETCQFLISCSL Trigger: TAGTGAGCAGCTAATCAGGAACTGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACTGAGTTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | CGATTGCAAGGGCGGCTCCTCACAGAAAAACTTCAACTGATAGCTGGGTTTGTCCTCATTATTTTATTTTaGGACAACGTGGAGATGGCT | + |
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Preference number: 4 (lower is better) Translates to: RLQGRLLTEKLQLIAGFVLIILF*DNVEMA Trigger: AGCCATCTCCACGTTGTCTCAAAATAAAATAATGAG...GACAAACCCAGCTATCAGTTGAAGTTTTTCTGTGAGGAGCCGCCCTTGCAATCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | AGTCCTTTTACAACCCACAAAGAGCGGTTGGAGACATGTCAGTTCCTGATTAGCCTTCGAGCCACCATGTaGAAGAAGTATGCAAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: SPFTTHKERLETCQFLISLRATM*KKYASL Trigger: TAAACTTGCATACTTCTTTCACATGGTGGCTCGAAG...GCTAATCAGGAACTGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | CACAGAAAAACTTCAACTGATAGCTGGGTTTGTCTTAATCAGGGTATATATAGGCAAACTGGTAGGTGCTaGGGACACAGGTGGAGCACA | + |
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Preference number: 4 (lower is better) Translates to: HRKTSTDSWVCLNQGIYRQTGRC*GHRWST Trigger: TGTGCTCCACCTGTGTCCTCAGCACCTACCAGTTTG...CCTATATATACCCTGATTAAGACAAACCCAGCTATCAGTTGAAGTTTTTCTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | ATACAGGAAACTCAGTCCTTTTACAACCCACAAAGAGCGGTTGGAGACATGTCACAGTCAGAACTTCTTTaGCATGCCTCAACCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: IQETQSFYNPQRAVGDMSQSELL*HASTRN Trigger: GTTTCTGGTTGAGGCATGTCAAAGAAGTTCTGACTG...TGACATGTCTCCAACCGCTCTTTGTGGGTTGTAAAAGGACTGAGTTTCCTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CCA 90 bp | CACAAGGCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGTTGGAGGCTTCCTTaGAGCCAAAACTGCCATATG | + |
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Preference number: 4 (lower is better) Translates to: HKAWKNTPAHAQTTCLLVSWRLP*SQNCHM Trigger: CATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACT...AACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGCCTTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR GCA 90 bp | GCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGAACAGAAACAGTAGGATGTTaGCCAGAATTCCAACCCCAG | + |
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Preference number: 4 (lower is better) Translates to: AWKNTPAHAQTTCLLVRTETVGC*PEFQPQ Trigger: CTGGGGTTGGAATTCTGGGCAACATCCTACTGTTTC...TGTTCTAACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | AGTTGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTAATGGGCCTCAGTTGTaGGTCAGTCAAAATTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SCTGYIQVYIQPRKERTINGPQL*VSQNWR Trigger: TCTCCAATTTTGACTGACTCACAACTGAGGCCCATT...AATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | AGTTGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTTCAAGAAGAGGAGAATaGAGGTATTGGCCACAGCTA | + |
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Preference number: 4 (lower is better) Translates to: SCTGYIQVYIQPRKERTISRRGE*RYWPQL Trigger: TAGCTGTGGCCAATACCTTCATTCTCCTCTTCTTGA...AATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | TGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTATAAAAAGCTCACGAATGTaGCTACCAGCATCAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: CTGYIQVYIQPRKERTIIKSSRM*LPASGQ Trigger: CTGTCCTGATGCTGGTAGTCACATTCGTGAGCTTTT...TATAATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR GCA 90 bp | CACAAGGCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGAACTTCTTTGACATaGCTCAACCAGAAACGAGTG | + |
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Preference number: 4 (lower is better) Translates to: HKAWKNTPAHAQTTCLLVRTSLT*LNQKRV Trigger: CACTCGTTTCTGGTTGAGGCATGTCAAAGAAGTTCT...AACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGCCTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | GCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTATACTCCTTCCTAAGTTTGTTTGGATaGTCTGAATGGGCCTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: ATYKCISSPERREQLYSFLSLFG*SEWASV Trigger: AACTGAGGCCCATTCAGATCATCCAAACAAACTTAG...GAAGGAGTATAATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | TGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTATAAGCTCATGCCAACATTaGAACCAGAAGTTGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: CTGYIQVYIQPRKERTIISSCQH*NQKLSR Trigger: TCTGCTCAACTTCTGGTTTCAATGTTGGCATGAGCT...TATAATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CCA 90 bp | CACAGAAAAACTTCAACTGATAGCTGGGTTTGTCTTAATCAGGGTATATATAGGACATTTGAGGTCAGTTaGAGGCTTCCTTGGAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: HRKTSTDSWVCLNQGIYRTFEVS*RLPWSQ Trigger: TTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGT...CCTATATATACCCTGATTAAGACAAACCCAGCTATCAGTTGAAGTTTTTCTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CCA 90 bp | GTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTATACAACTGCCATATGGTTTaGAAATGTCAAGAAGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: VQATYKCISSPERREQLYNCHMV*KCQEEE Trigger: CTCCTCTTCTTGACATTTCCAAACCATATGGCAGTT...GTATAATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | TGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATTATACAAAGCAAAAGAATCTaGAGAGCCACTTCTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: CTGYIQVYIQPRKERTIIQSKRI*RATSSV Trigger: AACAGAAGAAGTGGCTCTTCAGATTCTTTTGCTTTG...TATAATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAACTTCAACTGATAGCTGGGTTTGTCTTAATCAGGGTATATATAGGAAGTTTGTTTGGATGATCTaGATGGGCCTCAGTTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: RKTSTDSWVCLNQGIYRKFVWMI*MGLSCE Trigger: CTCACAACTGAGGCCCATTCAGATCATCCAAACAAA...CTTCCTATATATACCCTGATTAAGACAAACCCAGCTATCAGTTGAAGTTTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS GCA 90 bp | GGTGGAGCACATGTTTGTGCTTCGAGCCACCATGTGAAAGAAGTATaGAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTTGGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: GGAHVCASSHHVKEV*KFTFEVSWRLPWSQ Trigger: TTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACATGGTGGCTCGAAGCACAAACATGTGCTCCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 90 bp | TTGTGCTTCGAGCCACCATGTGAAAGAAGTATGCAAGTTTACATTTaGGGTCAGTTGGAGGCTTCCTTGGAGCCAAAACTGCCATATGGT | + |
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Preference number: 5 (lower is better) Translates to: LCFEPPCERSMQVYI*GQLEASLEPKLPYG Trigger: ACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACATGGTGGCTCGAAGCACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 90 bp | GAAAGAAAGTACAAATGCAGTCTAGAAGATAAAAGCTCACGAATGTaGCTACCAGCATCAGGACAGTATGGGCTGCTCTGGTCTCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: ERKYKCSLEDKSSRM*LPASGQYGLLWSQH Trigger: ATGCTGAGACCAGAGCAGCCCATACTGTCCTGATGCTGGTAGTCACATTCGTGAGCTTTTATCTTCTAGACTGCATTTGTACTTTCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS CCA 90 bp | AGCCACCATGTGAAAGAAGTATGCAAGTTTACATTTGAGGTCAGTTaGAGGCTTCCTTGGAGCCAAAACTGCCATATGGTTTGGAAATGT | + |
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Preference number: 5 (lower is better) Translates to: SHHVKEVCKFTFEVS*RLPWSQNCHMVWKC Trigger: ACATTTCCAAACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACATGGTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS CCA 90 bp | AAAGAAGTATGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTTaGAGCCAAAACTGCCATATGGTTTGGAAATGTCAAGAAGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KEVCKFTFEVSWRLP*SQNCHMVWKCQEEE Trigger: CTCCTCTTCTTGACATTTCCAAACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CAA 90 bp | GCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGAACAAATTCCAACCCCAGCTaGGCAAAGCAAAAGAATCTG | + |
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Preference number: 5 (lower is better) Translates to: AWKNTPAHAQTTCLLVRTNSNPS*AKQKNL Trigger: CAGATTCTTTTGCTTTGCCAAGCTGGGGTTGGAATT...TGTTCTAACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 90 bp | AGGAGAATGAAGGTATTGGCCACAGCTAAGTTTGTTTGGATGATCTaGATGGGCCTCAGTTGTGAGTCAGTCAAAATTGGAGAGAAATTA | + |
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Preference number: 5 (lower is better) Translates to: RRMKVLATAKFVWMI*MGLSCESVKIGEKL Trigger: TAATTTCTCTCCAATTTTGACTGACTCACAACTGAGGCCCATTCAGATCATCCAAACAAACTTAGCTGTGGCCAATACCTTCATTCTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS GCA 90 bp | AAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTTGGAGCCAAAACTaGCATATGGTTTGGAAATGTCAAGAAGAGGAGAATGAAGGTATT | + |
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Preference number: 5 (lower is better) Translates to: KFTFEVSWRLPWSQN*HMVWKCQEEENEGI Trigger: AATACCTTCATTCTCCTCTTCTTGACATTTCCAAACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CAA 90 bp | AAGTTGTACAGGCTACATACAAGTGTATATCCAGCCCAGAAAGGAGAGAACAATAGGAGAATGAAGGTATaGGCCACAGCTAAGTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: KLYRLHTSVYPAQKGENNRRMKV*ATAKFV Trigger: AACAAACTTAGCTGTGGCCAATACCTTCATTCTCCT...ATTGTTCTCTCCTTTCTGGGCTGGATATACACTTGTATGTAGCCTGTACAACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CAA 90 bp | AGAAAAACTTCAACTGATAGCTGGGTTTGTCTTAATCAGGGTATATATAGGAAGCAGTTGGAGGCTTCCTaGGAGCCAAAACTGCCATAT | + |
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Preference number: 5 (lower is better) Translates to: RKTSTDSWVCLNQGIYRKQLEAS*EPKLPY Trigger: ATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTG...CTTCCTATATATACCCTGATTAAGACAAACCCAGCTATCAGTTGAAGTTTTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CAA 90 bp | GCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGAACAACAGTCAGAACTTCTTaGACATGCCTCAACCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: AWKNTPAHAQTTCLLVRTTVRTS*TCLNQK Trigger: TTTCTGGTTGAGGCATGTCAAAGAAGTTCTGACTGT...TGTTCTAACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS-3UTR CAA 90 bp | AAGGCATGGAAAAATACCCCAGCACATGCACAGACTACTTGTTTACTAGTTAGAAAACTGCCATATGGTTaGGAAATGTCAAGAAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: KAWKNTPAHAQTTCLLVRKLPYG*EMSRRG Trigger: TCCTCTTCTTGACATTTCCAAACCATATGGCAGTTT...TCTAACTAGTAAACAAGTAGTCTGTGCATGTGCTGGGGTATTTTTCCATGCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 72 bp | GGACAGTATGGGCTGCTCTGGTCTCAGCATAGGCTCTaGACTTCTGACTGGTATTATGTATGTAGTGCATTC | + |
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Preference number: 6 (lower is better) Translates to: GQYGLLWSQHRL*TSDWYYVCSAF Trigger: GAATGCACTACATACATAATACCAGTCAGAAGTTCAGAGCCTATGCTGAGACCAGAGCAGCCCATACTGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 72 bp | GAGCCACCATGTGAAAGAAGTATGCAAGTTTACATTTaGGGTCAGTTGGAGGCTTCCTTGGAGCCAAAACTG | + |
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Preference number: 6 (lower is better) Translates to: EPPCERSMQVYI*GQLEASLEPKL Trigger: CAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACATGGTGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS GCA 72 bp | TTTGAGGTCAGTTGGAGGCTTCCTTGGAGCCAAAACTaGCATATGGTTTGGAAATGTCAAGAAGAGGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: FEVSWRLPWSQN*HMVWKCQEEEN Trigger: ATTCTCCTCTTCTTGACATTTCCAAACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS GCA 72 bp | CATGTTTGTGCTTCGAGCCACCATGTGAAAGAAGTATaGAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: HVCASSHHVKEV*KFTFEVSWRLP Trigger: AGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACATGGTGGCTCGAAGCACAAACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 72 bp | AAGGTATTGGCCACAGCTAAGTTTGTTTGGATGATCTaGATGGGCCTCAGTTGTGAGTCAGTCAAAATTGGA | + |
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Preference number: 6 (lower is better) Translates to: KVLATAKFVWMI*MGLSCESVKIG Trigger: TCCAATTTTGACTGACTCACAACTGAGGCCCATTCAGATCATCCAAACAAACTTAGCTGTGGCCAATACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS CCA 72 bp | TGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTTaGAGCCAAAACTGCCATATGGTTTGGAAATGTCAA | + |
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Preference number: 6 (lower is better) Translates to: CKFTFEVSWRLP*SQNCHMVWKCQ Trigger: TTGACATTTCCAAACCATATGGCAGTTTTGGCTCCAAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS CAA 72 bp | GGAGAAATAGTGGGGAAGCTTACAGTCAGAACTTCTTaGACATGCCTCAACCAGAAACGAGTGTTCACAAAA | + |
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Preference number: 6 (lower is better) Translates to: GEIVGKLTVRTS*TCLNQKRVFTK Trigger: TTTTGTGAACACTCGTTTCTGGTTGAGGCATGTCAAAGAAGTTCTGACTGTAAGCTTCCCCACTATTTCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS GCA 72 bp | ATAGTGGGGAAGCTTACAGTCAGAACTTCTTTGACATaGCTCAACCAGAAACGAGTGTTCACAAAAGAAATG | + |
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Preference number: 6 (lower is better) Translates to: IVGKLTVRTSLT*LNQKRVFTKEM Trigger: CATTTCTTTTGTGAACACTCGTTTCTGGTTGAGGCATGTCAAAGAAGTTCTGACTGTAAGCTTCCCCACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS TCA 72 bp | AGAGCCACTTCTTCTGTTGTCCTCATTATTTTATTTTaGGACAACGTGGAGATGGCTTCATTGCACAATGGA | + |
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Preference number: 6 (lower is better) Translates to: RATSSVVLIILF*DNVEMASLHNG Trigger: TCCATTGTGCAATGAAGCCATCTCCACGTTGTCTCAAAATAAAATAATGAGGACAACAGAAGAAGTGGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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| CDS CCA 72 bp | CTGGTCCAGATCATGGTGCTGATAAAAATAATATCCTaGGCAAACTGTAAGAAGCTCATGCCAACATTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LVQIMVLIKIIS*ANCKKLMPTLK Trigger: TTTCAATGTTGGCATGAGCTTCTTACAGTTTGCCCAGGATATTATTTTTATCAGCACCATGATCTGGACCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086338.2 |
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