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Pregenerated sensors for VMN1R64 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118388

Ensembl transcript IDs: ENSMUST00000078475.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGTGGAGCACATGATTGTGCCTTGAGCCACCATGTTAAAGAAGTATaGAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTGGGAACAAA +
Preference number: 5 (lower is better)
Translates to: GGAHDCALSHHVKEV*KFTFEVSWRLPGNK
Trigger: TTTGTTCCCAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTAACATGGTGGCTCAAGGCACAATCATGTGCTCCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS GCA 90 bp AGTCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGATGTTaGCCACAGTCCCAACCACAACCTGGCAAAGCAAAAGGATCTGAA +
Preference number: 5 (lower is better)
Translates to: SQSRLERNYGQTERC*PQSQPQPGKAKGSE
Trigger: TTCAGATCCTTTTGCTTTGCCAGGTTGTGGTTGGGACTGTGGGCAACATCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS GCA 90 bp TCCCTACAAATCAACAGGAAGGGAGAAACAGTGGGGAAGCTTAGATaGAAAAGTTCTATGACATCTATTAACCAAAGACGAGATTCCACA +
Preference number: 5 (lower is better)
Translates to: SLQINRKGETVGKLR*KSSMTSINQRRDST
Trigger: TGTGGAATCTCGTCTTTGGTTAATAGATGTCATAGAACTTTTGCATCTAAGCTTCCCCACTGTTTCTCCCTTCCTGTTGATTTGTAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CCA 72 bp AAGCTCACAAATGTGACCACCAGCATCATGATGGTGTaGGCTGCTTTGGTCTCAGCATGGCCTCTGTTGATC +
Preference number: 6 (lower is better)
Translates to: KLTNVTTSIMMV*AALVSAWPLLI
Trigger: GATCAACAGAGGCCATGCTGAGACCAAAGCAGCCCACACCATCATGATGCTGGTGGTCACATTTGTGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS GCA 72 bp CACAAATGTGACCACCAGCATCATGATGGTGTGGGCTaGTTTGGTCTCAGCATGGCCTCTGTTGATCTGATT +
Preference number: 6 (lower is better)
Translates to: HKCDHQHHDGVG*FGLSMASVDLI
Trigger: AATCAGATCAACAGAGGCCATGCTGAGACCAAAGCAGCCCACACCATCATGATGCTGGTGGTCACATTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CCA 72 bp GACCTGTATGGGCCTCAGTCGGGAGTCAGTCAAGACTaGAGAGAAATTATGGACAAACAGAAAGATGTTGCC +
Preference number: 6 (lower is better)
Translates to: DLYGPQSGVSQD*REIMDKQKDVA
Trigger: GGCAACATCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGACTCCCGACTGAGGCCCATACAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 90 bp GAATATGCAAACAGAAGGAGCATGAATGCATTGGCTACAGCCAAGTaGATTAGAATGACCTGTATGGGCCTCAGTCGGGAGTCAGTCAAG +
Preference number: 6 (lower is better)
Translates to: EYANRRSMNALATAK*IRMTCMGLSRESVK
Trigger: CTTGACTGACTCCCGACTGAGGCCCATACAGGTCATTCTAATCAACTTGGCTGTAGCCAATGCATTCATGCTCCTTCTGTTTGCATATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 72 bp GGTACTGAGGAGACAGGTGGAGCACATGATTGTGCCTaGAGCCACCATGTTAAAGAAGTATGCAAGTTTACA +
Preference number: 6 (lower is better)
Translates to: GTEETGGAHDCA*SHHVKEVCKFT
Trigger: TGTAAACTTGCATACTTCTTTAACATGGTGGCTCAAGGCACAATCATGTGCTCCACCTGTCTCCTCAGTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 90 bp AAACTGGTAGGTACTGAGGAGACAGGTGGAGCACATGATTGTGCCTaGAGCCACCATGTTAAAGAAGTATGCAAGTTTACATTTGAGGTC +
Preference number: 6 (lower is better)
Translates to: KLVGTEETGGAHDCA*SHHVKEVCKFTFEV
Trigger: GACCTCAAATGTAAACTTGCATACTTCTTTAACATGGTGGCTCAAGGCACAATCATGTGCTCCACCTGTCTCCTCAGTACCTACCAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS TCA 72 bp GTACTGAGGAGACAGGTGGAGCACATGATTGTGCCTTaGGCCACCATGTTAAAGAAGTATGCAAGTTTACAT +
Preference number: 6 (lower is better)
Translates to: VLRRQVEHMIVP*ATMLKKYASLH
Trigger: ATGTAAACTTGCATACTTCTTTAACATGGTGGCTCAAGGCACAATCATGTGCTCCACCTGTCTCCTCAGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CCA 72 bp CTGGTCCAAGCCATGATGCCAATGAATATGATGTCATaGGAAAACCGCAAGAAATTCATGTCTACACTGACC +
Preference number: 6 (lower is better)
Translates to: LVQAMMPMNMMS*ENRKKFMSTLT
Trigger: GGTCAGTGTAGACATGAATTTCTTGCGGTTTTCCCATGACATCATATTCATTGGCATCATGGCTTGGACCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 72 bp AAGACTGGAGAGAAATTATGGACAAACAGAAAGATGTaGCCCACAGTCCCAACCACAACCTGGCAAAGCAAA +
Preference number: 6 (lower is better)
Translates to: KTGEKLWTNRKM*PTVPTTTWQSK
Trigger: TTTGCTTTGCCAGGTTGTGGTTGGGACTGTGGGCAACATCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 90 bp TCAATCAGGTCATATGAATATGCAAACAGAAGGAGCATGAATGCATaGGCTACAGCCAAGTTGATTAGAATGACCTGTATGGGCCTCAGT +
Preference number: 6 (lower is better)
Translates to: SIRSYEYANRRSMNA*ATAKLIRMTCMGLS
Trigger: ACTGAGGCCCATACAGGTCATTCTAATCAACTTGGCTGTAGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGACCTGATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 72 bp ATGTCTACACTGACCCCAGAGATGGAGCATATCCAATaGTCTTTAGAATCAGAGTCATTGTGTGTTTTCTGT +
Preference number: 6 (lower is better)
Translates to: MSTLTPEMEHIQ*SLESESLCVFC
Trigger: ACAGAAAACACACAATGACTCTGATTCTAAAGACAATTGGATATGCTCCATCTCTGGGGTCAGTGTAGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5
CDS CAA 72 bp TCATATGAATATGCAAACAGAAGGAGCATGAATGCATaGGCTACAGCCAAGTTGATTAGAATGACCTGTATG +
Preference number: 6 (lower is better)
Translates to: SYEYANRRSMNA*ATAKLIRMTCM
Trigger: CATACAGGTCATTCTAATCAACTTGGCTGTAGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078475.5