Pregenerated sensors for VMN1R62 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092579Ensembl transcript IDs: ENSMUST00000173956.3, ENSMUST00000237772.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACATCATTGGCAGTGGTCCAGTTGCTGGGACTGCTTCGTTTGCGTaGTTACGAATTCCTGGTGCTAGCTGGACATGTTCTAAGAAGATA | + |
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Preference number: 1 (lower is better) Translates to: YIIGSGPVAGTASFA*LRIPGASWTCSKKI Trigger: TATCTTCTTAGAACATGTCCAGCTAGCACCAGGAATTCGTAATCACGCAAACGAAGCAGTCCCAGCAACTGGACCACTGCCAATGATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR CCA 90 bp | ATCTCAGCCAGTGTTGAGTGCAGGAGAAACAGCCTTCTCTCAAGATaGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTGGCATTGCCT | + |
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Preference number: 1 (lower is better) Translates to: ISASVECRRNSLLSR*FSVKQISLLGVALP Trigger: AGGCAATGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCTCCTGCACTCAACACTGGCTGAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR TCA 90 bp | GTGTTGAGTGCAGGAGAAACAGCCTTCTCTCAAGATGGTTTTCAGTaGAGCAGATATCTTTATTGGGGGTGGCATTGCCTATACAACACA | + |
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Preference number: 1 (lower is better) Translates to: VLSAGETAFSQDGFQ*SRYLYWGWHCLYNT Trigger: TGTGTTGTATAGGCAATGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCTCCTGCACTCAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGGTGGCATTGCCTATACAACACATGGAGTGAGGTTAGGGATTTTTCAGATGTGGCAGAGCTGGGGGTaGACTGGCTCTGTGTTTACC | + |
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Preference number: 2 (lower is better) Translates to: GGGIAYTTHGVRLGIFQMWQSWG*TGSVFT Trigger: GGTAAACACAGAGCCAGTCCACCCCCAGCTCTGCCA...CATCTGAAAAATCCCTAACCTCACTCCATGTGTTGTATAGGCAATGCCACCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGCATTGCCTATACAACACATGGAGTGAGGTTAGGGATTTTTCAGATGAGGAGCTGGGGGTGGACTaGCTCTGTGTTTACCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: GWHCLYNTWSEVRDFSDEELGVD*LCVYLL Trigger: TAACAGGTAAACACAGAGCCAGTCCACCCCCAGCTC...CTCATCTGAAAAATCCCTAACCTCACTCCATGTGTTGTATAGGCAATGCCACCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR GCA 90 bp | ATGGCAGAGCTGGGGGTGGACTGGCTCTGTGTTTACCTGTTAGATGCAGTCCTACTGCTGGTATCAGGATaGTATTTTTCAGGGTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: MAELGVDWLCVYLLDAVLLLVSG*YFSGFR Trigger: TCTAAACCCTGAAAAATAGCATCCTGATACCAGCAG...TAGGACTGCATCTAACAGGTAAACACAGAGCCAGTCCACCCCCAGCTCTGCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTGGCAGAGCTGGGGGTGGACTaGCTCTGTGTTTACCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: SLLSRWFSVKQISLLGVAELGVD*LCVYLL Trigger: TAACAGGTAAACACAGAGCCAGTCCACCCCCAGCTC...TGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | AAACAGCCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTAAGACTACCACAGGATaGCAGAGCTGGGGGTGGACT | + |
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Preference number: 2 (lower is better) Translates to: KQPSLKMVFSEADIFIGGKTTTG*QSWGWT Trigger: AGTCCACCCCCAGCTCTGCCATCCTGTGGTAGTCTT...ACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | TTACGAATTCCTGGTGCTAGCTGGACATGTTCTAAGAAGATAGGAAGTTTACCCGATCAGTCCTTCTGCTaGTATCAGGATGCTATTTTT | + |
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Preference number: 2 (lower is better) Translates to: LRIPGASWTCSKKIGSLPDQSFC*YQDAIF Trigger: AAAAATAGCATCCTGATACCAGCAGAAGGACTGATC...GGGTAAACTTCCTATCTTCTTAGAACATGTCCAGCTAGCACCAGGAATTCGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTCTGCTGGTATCAGGATaGTATTTTTCAGGGTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: KQPSLKMVFSEADIFIGGLLVSG*YFSGFR Trigger: TCTAAACCCTGAAAAATAGCATCCTGATACCAGCAG...ACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGAAACAGCCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGATCAGTCCTTCTGCTaGTATCAGGATGCTATTTTT | + |
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Preference number: 2 (lower is better) Translates to: RRNSLLSRWFSVKQISLLDQSFC*YQDAIF Trigger: AAAAATAGCATCCTGATACCAGCAGAAGGACTGATC...CAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR TCA 72 bp | GCAGGAGAAACAGCCTTCTCTCAAGATGGTTTTCAGTaGAGCAGATATCTTTATTGGGGGTGGCATTGCCTA | + |
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Preference number: 3 (lower is better) Translates to: AGETAFSQDGFQ*SRYLYWGWHCL Trigger: TAGGCAATGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCTCCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR GCA 72 bp | AGATGCAGTCCTATAGCAAGGCAGGATCAGTCCTTCTaGTGGTATCAGGATGCTATTTTTCAGGGTTTAGAC | + |
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Preference number: 3 (lower is better) Translates to: RCSPIARQDQSF*WYQDAIFQGLD Trigger: GTCTAAACCCTGAAAAATAGCATCCTGATACCAGCAGAAGGACTGATCCTGCCTTGCTATAGGACTGCATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR CCA 72 bp | TGCAGTCCTATAGCAAGGCAGGATCAGTCCTTCTGCTaGTATCAGGATGCTATTTTTCAGGGTTTAGACATG | + |
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Preference number: 3 (lower is better) Translates to: CSPIARQDQSFC*YQDAIFQGLDM Trigger: CATGTCTAAACCCTGAAAAATAGCATCCTGATACCAGCAGAAGGACTGATCCTGCCTTGCTATAGGACTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| 3UTR CCA 72 bp | AGTGTTGAGTGCAGGAGAAACAGCCTTCTCTCAAGATaGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: SVECRRNSLLSR*FSVKQISLLGV Trigger: CACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCTCCTGCACTCAACACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR TCA 90 bp | CCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTGGCATTCACAGGTGGAGCACATaGTTGTGCCTCGAGCAACCA | + |
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Preference number: 4 (lower is better) Translates to: PSLKMVFSEADIFIGGGIHRWST*LCLEQP Trigger: TGGTTGCTCGAGGCACAATCATGTGCTCCACCTGTG...AATGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR TCA 90 bp | AGAAACAGCCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGCACAGGTGGAGCACATaGTTGTGCCTCGAGCAACCA | + |
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Preference number: 4 (lower is better) Translates to: RNSLLSRWFSVKQISLLGHRWST*LCLEQP Trigger: TGGTTGCTCGAGGCACAATCATGTGCTCCACCTGTG...CCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGGCTGTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR GCA 90 bp | CACAGGATGGCAGAGCTGGGGGTGGACTGGCTCTGTGTTTACCTGTTAGATGCACAGGTGAAAGAAATATaGAAGTTTACATTTGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: HRMAELGVDWLCVYLLDAQVKEI*KFTFEV Trigger: GACCTCAAATGTAAACTTGCATATTTCTTTCACCTG...TGCATCTAACAGGTAAACACAGAGCCAGTCCACCCCCAGCTCTGCCATCCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR TCA 90 bp | CCTATAGCAAGGCAGGATCAGTCCTTCTGCTGGTATCAGGATGCTATTTTTCAGATGTGCAGAGAACAATaGCCCTTAGAATCCCTAAAT | + |
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Preference number: 4 (lower is better) Translates to: PIARQDQSFCWYQDAIFQMCREQ*PLESLN Trigger: ATTTAGGGATTCTAAGGGTCATTGTTCTCTGCACAT...CTGAAAAATAGCATCCTGATACCAGCAGAAGGACTGATCCTGCCTTGCTATAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR TCA 90 bp | AGATATCTTTATTGGGGGTGGCATTGCCTATACAACACATGGAGTGAGGTTAGGATTTCCATACTGACATaGTGTGCAGAGAACAATGAC | + |
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Preference number: 4 (lower is better) Translates to: RYLYWGWHCLYNTWSEVRISILT*CAENND Trigger: GTCATTGTTCTCTGCACATCATGTCAGTATGGAAAT...CCTAACCTCACTCCATGTGTTGTATAGGCAATGCCACCCCCAATAAAGATATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR TCA 90 bp | CCTTCTCTCAAGATGGTTTTCAGTGAAGCAGATATCTTTATTGGGGGTGGCATTATGTGCAGAGAACAATaGCCCTTAGAATCCCTAAAT | + |
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Preference number: 4 (lower is better) Translates to: PSLKMVFSEADIFIGGGIMCREQ*PLESLN Trigger: ATTTAGGGATTCTAAGGGTCATTGTTCTCTGCACAT...AATGCCACCCCCAATAAAGATATCTGCTTCACTGAAAACCATCTTGAGAGAAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR GCA 90 bp | GGGTGGCATTGCCTATACAACACATGGAGTGAGGTTAGGGATTTTTCAGATGAGCAGGTGAAAGAAATATaGAAGTTTACATTTGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GWHCLYNTWSEVRDFSDEQVKEI*KFTFEV Trigger: GACCTCAAATGTAAACTTGCATATTTCTTTCACCTG...CTCATCTGAAAAATCCCTAACCTCACTCCATGTGTTGTATAGGCAATGCCACCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR CAA 90 bp | CACAGGATGGCAGAGCTGGGGGTGGACTGGCTCTGTGTTTACCTGTTAGATGCATGGAGTCAGTCAAGATaGGAGAGAAGTTATGGACAA | + |
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Preference number: 5 (lower is better) Translates to: HRMAELGVDWLCVYLLDAWSQSR*ERSYGQ Trigger: TTGTCCATAACTTCTCTCCAATCTTGACTGACTCCA...TGCATCTAACAGGTAAACACAGAGCCAGTCCACCCCCAGCTCTGCCATCCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS TCA 90 bp | TGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTGATTaGCCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: WCGLLWSQHGLCCFD*PYVCGSFSGGVCVG Trigger: ACCTACACAGACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS TCA 90 bp | AGGATGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTaGTTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: RMVWAALVSAWPLLF*LTLCMWFILWWCLC Trigger: ACACAGACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS TCA 90 bp | CTGAGGACACAGGTGGAGCACATGATTGTGCCTCGAGCAACCAGGTaGAAGAAATATGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LRTQVEHMIVPRATR*KKYASLHLRSVGGF Trigger: GAAGCCTCCAACTGACCTCAAATGTAAACTTGCATATTTCTTTCACCTGGTTGCTCGAGGCACAATCATGTGCTCCACCTGTGTCCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS GCA 90 bp | GGTGGAGCACATGATTGTGCCTCGAGCAACCAGGTGAAAGAAATATaGAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTGGGAACAAT | + |
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Preference number: 5 (lower is better) Translates to: GGAHDCASSNQVKEI*KFTFEVSWRLPGNN Trigger: ATTGTTCCCAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATATTTCTTTCACCTGGTTGCTCGAGGCACAATCATGTGCTCCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS-3UTR CAA 90 bp | AGAATCTCAGCCAGTGTTGAGTGCAGGAGAAACAGCCTTCTCTCAAGATGGTTTTGGAGTCAGTCAAGATaGGAGAGAAGTTATGGACAA | + |
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Preference number: 5 (lower is better) Translates to: RISASVECRRNSLLSRWFWSQSR*ERSYGQ Trigger: TTGTCCATAACTTCTCTCCAATCTTGACTGACTCCA...AAACCATCTTGAGAGAAGGCTGTTTCTCCTGCACTCAACACTGGCTGAGATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS CAA 72 bp | GTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTaGATTGACCTTATGTATGTGGTTCATTCTCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: VGCSGLSMASVV*IDLMYVVHSLV Trigger: CACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS GCA 72 bp | AGATTGGAGAGAAGTTATGGACAAACAGAAGGATGTTaGCCACAGTCCCAACCACAACATGGCAAAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: RLERSYGQTEGC*PQSQPQHGKAK Trigger: TTTTGCTTTGCCATGTTGTGGTTGGGACTGTGGGCAACATCCTTCTGTTTGTCCATAACTTCTCTCCAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS CCA 72 bp | GTGAAAGAAATATGCAAGTTTACATTTGAGGTCAGTTaGAGGCTTCCTGGGAACAATATCAGTAAGGTCATA | + |
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Preference number: 6 (lower is better) Translates to: VKEICKFTFEVS*RLPGNNISKVI Trigger: TATGACCTTACTGATATTGTTCCCAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATATTTCTTTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS CAA 72 bp | ATGGAGCATATCGAATTGCTTTTAGAATCAGAGTCATaGTGTGATTTCTGTGGACCACTGACATTCATTAGC | + |
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Preference number: 6 (lower is better) Translates to: MEHIELLLESES*CDFCGPLTFIS Trigger: GCTAATGAATGTCAGTGGTCCACAGAAATCACACAATGACTCTGATTCTAAAAGCAATTCGATATGCTCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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| CDS CAA 72 bp | TCATATGAATATGCAAACAGAAGGAGCATGAATGCATaGGCCACAGCCAAGTTGATTAGAATGACTTGTATT | + |
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Preference number: 6 (lower is better) Translates to: SYEYANRRSMNA*ATAKLIRMTCI Trigger: AATACAAGTCATTCTAATCAACTTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173956.3 ENSMUST00000237772.2 |
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