Pregenerated sensors for VMN1R60 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118298Ensembl transcript IDs: ENSMUST00000173782.4, ENSMUST00000236262.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTTACCCTGCATCCTGGCCAGTAGGTTACAAGACTACCACAGGATaGCAGAGCTGGGGGATGGATTGGCTCTGTGTGTACCTGTTAGAT | + |
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Preference number: 1 (lower is better) Translates to: VYPASWPVGYKTTTG*QSWGMDWLCVYLLD Trigger: ATCTAACAGGTACACACAGAGCCAATCCATCCCCCAGCTCTGCCATCCTGTGGTAGTCTTGTAACCTACTGGCCAGGATGCAGGGTAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 90 bp | TTGTTGTTCCTCCTACAGTGCTGTCGAACCCTTCAACTCCTTGGATaGGATAGTCCTTCAGCTCTCTACCTCCTTCACTGGGGACCCTGT | + |
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Preference number: 1 (lower is better) Translates to: LLFLLQCCRTLQLLG*DSPSALYLLHWGPC Trigger: ACAGGGTCCCCAGTGAAGGAGGTAGAGAGCTGAAGGACTATCTCATCCAAGGAGTTGAAGGGTTCGACAGCACTGTAGGAGGAACAACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 90 bp | ATCTCAGCCAGTGTTGAGTGCAGGAGAAACAGCCTTCTCTTAAGATaGTTTTCAGTGAAGCAGACATCTTTATTGGGGGTGGCATTGTCT | + |
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Preference number: 1 (lower is better) Translates to: ISASVECRRNSLLLR*FSVKQTSLLGVALS Trigger: AGACAATGCCACCCCCAATAAAGATGTCTGCTTCACTGAAAACCATCTTAAGAGAAGGCTGTTTCTCCTGCACTCAACACTGGCTGAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 90 bp | AACAGGCAATTTGTGCAGGCATGTTATCAGAATCTCAGCCAGTGTTaGGTGCAGGAGAAACAGCCTTCTCTTAAGATGGTTTTCAGTGAA | + |
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Preference number: 1 (lower is better) Translates to: NRQFVQACYQNLSQC*VQEKQPSLKMVFSE Trigger: TTCACTGAAAACCATCTTAAGAGAAGGCTGTTTCTCCTGCACTCAACACTGGCTGAGATTCTGATAACATGCCTGCACAAATTGCCTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 90 bp | TATTTGTTATGTGCTGGCAAAGCCTCAGAGGAGACAGCTATATCTTaGTCCTGTCAGCAAAATCTTGTTGGTGTATGGGTTTTCGTGGTT | + |
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Preference number: 1 (lower is better) Translates to: YLLCAGKASEETAIS*SCQQNLVGVWVFVV Trigger: AACCACGAAAACCCATACACCAACAAGATTTTGCTGACAGGACCAAGATATAGCTGTCTCCTCTGAGGCTTTGCCAGCACATAACAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 90 bp | TCATTTTGCAGAAGTCCTAGGTCAGATCCATGCCGGCTCCATGATTaGATTCATTCTATGTGCTCCTATAAGCCTTGCTTAGTTGATTTT | + |
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Preference number: 1 (lower is better) Translates to: SFCRSPRSDPCRLHD*IHSMCSYKPCLVDF Trigger: AAAATCAACTAAGCAAGGCTTATAGGAGCACATAGAATGAATTCAATCATGGAGCCGGCATGGATCTGACCTAGGACTTCTGCAAAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 90 bp | ATTCATTCTATGTGCTCCTATAAGCCTTGCTTAGTTGATTTTATTTaGCATGTTCTCTTGGTGTCCTTTACCACTCTGACTCCTATAGTT | + |
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Preference number: 1 (lower is better) Translates to: IHSMCSYKPCLVDFI*HVLLVSFTTLTPIV Trigger: AACTATAGGAGTCAGAGTGGTAAAGGACACCAAGAGAACATGGCAAATAAAATCAACTAAGCAAGGCTTATAGGAGCACATAGAATGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | ATAAGTCATTGGTTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATGGGAAAAGACAAGGCTaGCCACTCCTTCCCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: ISHWLLTSTSSEPSLLQHGKRQG*PLLPFL Trigger: GAGAAAGGGAAGGAGTGGGCAGCCTTGTCTTTTCCC...ATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAACCAATGACTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | TTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATAACTTGAAGACAAAATCTGCCTGCCTCTaGCTCCCAAGTGTTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: LLTSTSSEPSLLQHNLKTKSACL*LPSVGI Trigger: AATCCCAACACTTGGGAGGCAGAGGCAGGCAGATTT...TGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | CTATCCCTTACTATCTGTCTCTCTCTGTGTCTGTCTCTCTCTTCAGCCATCTTTTCCACTCCTGCTTCCTaGCCATGGCATTTCCCCTAT | + |
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Preference number: 2 (lower is better) Translates to: LSLTICLSLCLSLSSAIFSTPAS*PWHFPY Trigger: ATAGGGGAAATGCCATGGCCAGGAAGCAGGAGTGGA...AAAGATGGCTGAAGAGAGAGACAGACACAGAGAGAGACAGATAGTAAGGGATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CAA 90 bp | GGACCCTGTTTTGCATCCAATGACTGTGAGCGTACACTTCTGTATTaGTTATGTGCTGGCAAAGCCTCAGAGGAGACAGCTATATCTTGG | + |
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Preference number: 2 (lower is better) Translates to: GPCFASNDCERTLLY*LCAGKASEETAISW Trigger: CCAAGATATAGCTGTCTCCTCTGAGGCTTTGCCAGCACATAACAAATACAGAAGTGTACGCTCACAGTCATTGGATGCAAAACAGGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | GTTGGTGGACAAGTTCCAGCCCTAGAAGATTTTTCTGGTTACAGAAGATTGTCACAGCAGAAATCTGCCTaGCTCTGCCTCCCAAGTGTT | + |
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Preference number: 2 (lower is better) Translates to: VGGQVPALEDFSGYRRLSQQKSA*LCLPSV Trigger: AACACTTGGGAGGCAGAGGCAGGCAGATTTCTGCTG...TGACAATCTTCTGTAACCAGAAAAATCTTCTAGGGCTGGAACTTGTCCACCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CAA 90 bp | GTATTTGTTATGTGCTGGCAAAGCCTCAGAGGAGACAGCTATATCTaGGTCCTGTCAGCAAAATCTTGTTGGTGTATGGGTTTTCGTGGT | + |
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Preference number: 2 (lower is better) Translates to: VFVMCWQSLRGDSYI*VLSAKSCWCMGFRG Trigger: ACCACGAAAACCCATACACCAACAAGATTTTGCTGACAGGACCAAGATATAGCTGTCTCCTCTGAGGCTTTGCCAGCACATAACAAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | GTTGGTGGACAAGTTCCAGCCCTAGAAGATTTTTCTGGTTACAGAAGATTGTCATCCAGTTGCTGGGACTaGTTCTTTTGCGTGATTACG | + |
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Preference number: 2 (lower is better) Translates to: VGGQVPALEDFSGYRRLSSSCWD*FFCVIT Trigger: CGTAATCACGCAAAAGAAGCAGTCCCAGCAACTGGA...TGACAATCTTCTGTAACCAGAAAAATCTTCTAGGGCTGGAACTTGTCCACCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGTATACTTGCCTATAGTTCAAATGCACAATCTCTACTAATTCCCTCTACACTCTACCTCCTTCACTaGGGACCCTGTTTTGCATCC | + |
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Preference number: 2 (lower is better) Translates to: PCILAYSSNAQSLLIPSTLYLLH*GPCFAS Trigger: GGATGCAAAACAGGGTCCCCAGTGAAGGAGGTAGAG...TGTAGAGGGAATTAGTAGAGATTGTGCATTTGAACTATAGGCAAGTATACAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | ACTCCTAAATTCCAAGAACTTTCCGTTGTAATAGGTTTCTACATCACTCCCAAATGGCAGTGGTCCAGTTaGTGGGACTGCTTCTTTTGC | + |
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Preference number: 2 (lower is better) Translates to: TPKFQELSVVIGFYITPKWQWSS*WDCFFC Trigger: GCAAAAGAAGCAGTCCCAGCAACTGGACCACTGCCA...TTTGGGAGTGATGTAGAAACCTATTACAACGGAAAGTTCTTGGAATTTAGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATCCTGCTTCCTGGCCATaGCATTTCCCCTATACTGGG | + |
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Preference number: 2 (lower is better) Translates to: YMSNAIPFPRFLSENPVYPASWP*HFPYTG Trigger: CCCAGTATAGGGGAAATGCCATGGCCAGGAAGCAGG...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGGGTTCTTTAAGCTCCACCTACTATTTTGCTATGTGCCTTTGCCTCTGGTACAAGTTTCCAATTTCTaGGCATCTAGGCAGTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: SGFFKLHLLFCYVPLPLVQVSNF*ASRQCH Trigger: ATGACACTGCCTAGATGCCCAGAAATTGGAAACTTG...TACCAGAGGCAAAGGCACATAGCAAAATAGTAGGTGGAGCTTAAAGAACCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATAGCTGGGGGATGGATTaGCTCTGTGTGTACCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: YMSNAIPFPRFLSENPVYSWGMD*LCVYLL Trigger: TAACAGGTACACACAGAGCCAATCCATCCCCCAGCT...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | ACTCCTAAATTCCAAGAACTTTCCGTTGTAATAGGTTTCTACATCACTCCCAAATCCTCTTCATTTCCGTaGTTTCCAACACATCCACTC | + |
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Preference number: 2 (lower is better) Translates to: TPKFQELSVVIGFYITPKSSSFP*FPTHPL Trigger: GAGTGGATGTGTTGGAAACCACGGAAATGAAGAGGA...TTTGGGAGTGATGTAGAAACCTATTACAACGGAAAGTTCTTGGAATTTAGGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR GCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATTGGGACTGCTTCTTTTaGGTGATTACGAATTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: YMSNAIPFPRFLSENPVYWDCFF*VITNSW Trigger: CCAGGAATTCGTAATCACGCAAAAGAAGCAGTCCCA...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGTATACTTGCCTATAGTTCAAATGCACAATCTCTACTAATTCCCTCTACAAGCCTTCTCTTAAGATaGTTTTCAGTGAAGCAGACA | + |
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Preference number: 2 (lower is better) Translates to: PCILAYSSNAQSLLIPSTSLLLR*FSVKQT Trigger: TGTCTGCTTCACTGAAAACCATCTTAAGAGAAGGCT...TGTAGAGGGAATTAGTAGAGATTGTGCATTTGAACTATAGGCAAGTATACAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATGTATTTGTTATGTGCTaGCAAAGCCTCAGAGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: YMSNAIPFPRFLSENPVYVFVMC*QSLRGD Trigger: GTCTCCTCTGAGGCTTTGCCAGCACATAACAAATAC...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CAA 90 bp | TCTCTGGATGGTCCTTCCTTCAGTCTCAGCACCAAATTAGAAAGATaGCATACTAGCAACTTAATAGTACTCCTGAAACCTTTAGATAAA | + |
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Preference number: 2 (lower is better) Translates to: SLDGPSFSLSTKLER*HTSNLIVLLKPLDK Trigger: TTTATCTAAAGGTTTCAGGAGTACTATTAAGTTGCTAGTATGCAATCTTTCTAATTTGGTGCTGAGACTGAAGGAAGGACCATCCAGAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGTATACTTGCCTATAGTTCAAATGCACAATCTCTACTAATTCCCTCTACAAACAAATCCAAGAGGTaGTTCTTTGAGAAAATCAAC | + |
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Preference number: 2 (lower is better) Translates to: PCILAYSSNAQSLLIPSTNKSKR*FFEKIN Trigger: GTTGATTTTCTCAAAGAACCACCTCTTGGATTTGTT...TGTAGAGGGAATTAGTAGAGATTGTGCATTTGAACTATAGGCAAGTATACAGGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATGAGACAGCTATATCTTaGTCCTGTCAGCAAAATCTT | + |
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Preference number: 2 (lower is better) Translates to: YMSNAIPFPRFLSENPVYETAIS*SCQQNL Trigger: AAGATTTTGCTGACAGGACCAAGATATAGCTGTCTC...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | GCATCCTGGCCAGTAGGTTACAAGACTACCACAGGATaGCAGAGCTGGGGGATGGATTGGCTCTGTGTGTAC | + |
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Preference number: 3 (lower is better) Translates to: ASWPVGYKTTTG*QSWGMDWLCVY Trigger: GTACACACAGAGCCAATCCATCCCCCAGCTCTGCCATCCTGTGGTAGTCTTGTAACCTACTGGCCAGGATGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 72 bp | CCTCTTCATTTCCGTGGTTTCCAACACATCCACTCCTaGTTCCTGGCCATGGCATTTCCCCTATACTGGGGG | + |
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Preference number: 3 (lower is better) Translates to: PLHFRGFQHIHS*FLAMAFPLYWG Trigger: CCCCCAGTATAGGGGAAATGCCATGGCCAGGAAGCAGGAGTGGATGTGTTGGAAACCACGGAAATGAAGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 72 bp | CTGGGGGATGGATTGGCTCTGTGTGTACCTGTTAGATaGAGTCCTAGAGCAAGGCAGGATCAGTCCTTTTGC | + |
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Preference number: 3 (lower is better) Translates to: LGDGLALCVPVR*SPRARQDQSFC Trigger: GCAAAAGGACTGATCCTGCCTTGCTCTAGGACTGCATCTAACAGGTACACACAGAGCCAATCCATCCCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 72 bp | CCTGGAGCTCACTTTGTAGACCAGCAGAAATCTGCCTaGCTCTGCCTCCCAAGTGTTGGGATTAAAGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: PGAHFVDQQKSA*LCLPSVGIKGV Trigger: CACACCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGCAGATTTCTGCTGGTCTACAAAGTGAGCTCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | AAGACTACCACAGGATGGCAGAGCTGGGGGATGGATTaGCTCTGTGTGTACCTGTTAGATGCAGTCCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: KTTTGWQSWGMD*LCVYLLDAVLE Trigger: CTCTAGGACTGCATCTAACAGGTACACACAGAGCCAATCCATCCCCCAGCTCTGCCATCCTGTGGTAGTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 72 bp | CTCCTACAGTGCTGTCGAACCCTTCAACTCCTTGGATaGGATAGTCCTTCAGCTCTCTACCTCCTTCACTGG | + |
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Preference number: 3 (lower is better) Translates to: LLQCCRTLQLLG*DSPSALYLLHW Trigger: CCAGTGAAGGAGGTAGAGAGCTGAAGGACTATCTCATCCAAGGAGTTGAAGGGTTCGACAGCACTGTAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | GGGATGAGTGTACATCATTGGCAGTGGTCCAGTTGCTaGGACTGCTTCTTTTGCGTGATTACGAATTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GMSVHHWQWSSC*DCFFCVITNSW Trigger: CCAGGAATTCGTAATCACGCAAAAGAAGCAGTCCCAGCAACTGGACCACTGCCAATGATGTACACTCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CAA 90 bp | TTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATAACTTGAAGACATATGGGTTTTCGTGGTaGTTTAGGGGATGCATCCCC | + |
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Preference number: 3 (lower is better) Translates to: LLTSTSSEPSLLQHNLKTYGFSW*FRGCIP Trigger: GGGGATGCATCCCCTAAACAACCACGAAAACCCATA...TGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 72 bp | TATACAACACATGGAGTGAGGTTAGGGTTTTTGGGATaGGTGTACATCATTGGCAGTGGTCCAGTTGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: YTTHGVRLGFLG*VYIIGSGPVAG Trigger: CCCAGCAACTGGACCACTGCCAATGATGTACACTCATCCCAAAAACCCTAACCTCACTCCATGTGTTGTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | TGTGCTGGCAAAGCCTCAGAGGAGACAGCTATATCTTaGTCCTGTCAGCAAAATCTTGTTGGTGTATGGGTT | + |
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Preference number: 3 (lower is better) Translates to: CAGKASEETAIS*SCQQNLVGVWV Trigger: AACCCATACACCAACAAGATTTTGCTGACAGGACCAAGATATAGCTGTCTCCTCTGAGGCTTTGCCAGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 72 bp | AGATGCAGTCCTAGAGCAAGGCAGGATCAGTCCTTTTaGTGGCATCAAGATGAGAATTTTCAGGGTTTGGAT | + |
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Preference number: 3 (lower is better) Translates to: RCSPRARQDQSF*WHQDENFQGLD Trigger: ATCCAAACCCTGAAAATTCTCATCTTGATGCCAGCAAAAGGACTGATCCTGCCTTGCTCTAGGACTGCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR GCA 72 bp | CCTTCCTCAGGGTTCTTTAAGCTCCACCTACTATTTTaGTATGTGCCTTTGCCTCTGGTAACAACAGGTACT | + |
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Preference number: 3 (lower is better) Translates to: PSSGFFKLHLLF*YVPLPLVTTGT Trigger: AGTACCTGTTGTTACCAGAGGCAAAGGCACATAGCAAAATAGTAGGTGGAGCTTAAAGAACCCTGAGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | CTTGAAGACAAGTCATGTTGTATTTGGAATGCTTTGTaGCTGGGTTGGTGGACAAGTTCCAGCCCTAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: LEDKSCCIWNAL*LGWWTSSSPRR Trigger: TCTTCTAGGGCTGGAACTTGTCCACCAACCCAGCCACAAAGCATTCCAAATACAACATGACTTGTCTTCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | GTTTCCAATTTCTGGGCATCTAGGCAGTGTCATACATaGGCTCCTTTGTGTTTTGTGGGCCTCAAGATAGAT | + |
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Preference number: 3 (lower is better) Translates to: VSNFWASRQCHT*APLCFVGLKID Trigger: ATCTATCTTGAGGCCCACAAAACACAAAGGAGCCCATGTATGACACTGCCTAGATGCCCAGAAATTGGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CAA 90 bp | CTATCCCTTACTATCTGTCTCTCTCTGTGTCTGTCTCTCTCTTCAGCCATCTTTGTCAGCAAAATCTTGTaGGTGTATGGGTTTTCGTGG | + |
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Preference number: 3 (lower is better) Translates to: LSLTICLSLCLSLSSAIFVSKIL*VYGFSW Trigger: CCACGAAAACCCATACACCAACAAGATTTTGCTGAC...AAAGATGGCTGAAGAGAGAGACAGACACAGAGAGAGACAGATAGTAAGGGATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 72 bp | TTTGTGCAGGCATGTTATCAGAATCTCAGCCAGTGTTaGGTGCAGGAGAAACAGCCTTCTCTTAAGATGGTT | + |
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Preference number: 3 (lower is better) Translates to: FVQACYQNLSQC*VQEKQPSLKMV Trigger: AACCATCTTAAGAGAAGGCTGTTTCTCCTGCACTCAACACTGGCTGAGATTCTGATAACATGCCTGCACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | TGCAGTCCTAGAGCAAGGCAGGATCAGTCCTTTTGCTaGCATCAAGATGAGAATTTTCAGGGTTTGGATATA | + |
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Preference number: 3 (lower is better) Translates to: CSPRARQDQSFC*HQDENFQGLDI Trigger: TATATCCAAACCCTGAAAATTCTCATCTTGATGCCAGCAAAAGGACTGATCCTGCCTTGCTCTAGGACTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | AGTGTTGAGTGCAGGAGAAACAGCCTTCTCTTAAGATaGTTTTCAGTGAAGCAGACATCTTTATTGGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: SVECRRNSLLLR*FSVKQTSLLGV Trigger: CACCCCCAATAAAGATGTCTGCTTCACTGAAAACCATCTTAAGAGAAGGCTGTTTCTCCTGCACTCAACACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CAA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATGAGCTGGGGGATGGATaGGCTCTGTGTGTACCTGTT | + |
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Preference number: 3 (lower is better) Translates to: YMSNAIPFPRFLSENPVYELGDG*ALCVPV Trigger: AACAGGTACACACAGAGCCAATCCATCCCCCAGCTC...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR-3UTR CAA 90 bp | TTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATAACTTGAAGACAAGGGTGAGAATGTCTTaGACAAAATTGAACACCTCT | + |
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Preference number: 3 (lower is better) Translates to: LLTSTSSEPSLLQHNLKTRVRMS*TKLNTS Trigger: AGAGGTGTTCAATTTTGTCAAAGACATTCTCACCCT...TGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR CCA 72 bp | AAGACAAGTCATGTTGTATTTGGAATGCTTTGTGGCTaGGTTGGTGGACAAGTTCCAGCCCTAGAAGATTTT | + |
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Preference number: 3 (lower is better) Translates to: KTSHVVFGMLCG*VGGQVPALEDF Trigger: AAAATCTTCTAGGGCTGGAACTTGTCCACCAACCCAGCCACAAAGCATTCCAAATACAACATGACTTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
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| 3UTR TCA 72 bp | GAATCACAAGCAATTGACATGGATCTAAAGAAGAAATaGCCTTTAACTAGAGGGCTTAGTTGCCCAAGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: ESQAIDMDLKKK*PLTRGLSCPSS Trigger: GGAGCTTGGGCAACTAAGCCCTCTAGTTAAAGGTCATTTCTTCTTTAGATCCATGTCAATTGCTTGTGATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR TCA 72 bp | ATTTTTCTGGTTACAGAAGATTGTCATAACACGTTGTaGGTCATCCATTGCTTGAAGTACTACTTAGGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: IFLVTEDCHNTL*VIHCLKYYLGP Trigger: TGGCCCTAAGTAGTACTTCAAGCAATGGATGACTCACAACGTGTTATGACAATCTTCTGTAACCAGAAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCTGTATACTTGCCTATAGTTCAAATGCACAATCTCTACTAATTCCCTCTACAGGGTTTGGATATATTTaGACCTTATTATCGCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: PCILAYSSNAQSLLIPSTGFGYI*TLLSLC Trigger: ACAGAGCGATAATAAGGTCAAAATATATCCAAACCC...TGTAGAGGGAATTAGTAGAGATTGTGCATTTGAACTATAGGCAAGTATACAGGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR TCA 90 bp | CCTGGAGCTCACTTTGTAGACCAGCAGAAATCTGCCTGCCTCTGCCTCCCAAGTCACAGGTGGAGCACATaGTTGTGCCTCGAGCAACTA | + |
|
Preference number: 4 (lower is better) Translates to: PGAHFVDQQKSACLCLPSHRWST*LCLEQL Trigger: TAGTTGCTCGAGGCACAATCATGTGCTCCACCTGTG...ACTTGGGAGGCAGAGGCAGGCAGATTTCTGCTGGTCTACAAAGTGAGCTCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | CAAGACTACCACAGGATGGCAGAGCTGGGGGATGGATaGGCTCTGTGTGTACCTGTTAGATGCAGTCCTAGA | + |
|
Preference number: 4 (lower is better) Translates to: QDYHRMAELGDG*ALCVPVRCSPR Trigger: TCTAGGACTGCATCTAACAGGTACACACAGAGCCAATCCATCCCCCAGCTCTGCCATCCTGTGGTAGTCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TGTTCCTCCTACAGTGCTGTCGAACCCTTCAACTCCTaGGATGAGATAGTCCTTCAGCTCTCTACCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: CSSYSAVEPFNS*DEIVLQLSTSF Trigger: GAAGGAGGTAGAGAGCTGAAGGACTATCTCATCCAAGGAGTTGAAGGGTTCGACAGCACTGTAGGAGGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | CTTCAGCTCTCTACCTCCTTCACTGGGGACCCTGTTTaGCATCCAATGACTGTGAGCGTACACTTCTGTATT | + |
|
Preference number: 4 (lower is better) Translates to: LQLSTSFTGDPV*HPMTVSVHFCI Trigger: AATACAGAAGTGTACGCTCACAGTCATTGGATGCAAAACAGGGTCCCCAGTGAAGGAGGTAGAGAGCTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR CCA 90 bp | CTATCCCTTACTATCTGTCTCTCTCTGTGTCTGTCTCTCTCTTCAGCCATCTTTGTATGGGCCTCAGTCTaGAGTCTGTCAAGATTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSLTICLSLCLSLSSAIFVWASV*SLSRLE Trigger: CTCCAATCTTGACAGACTCCAGACTGAGGCCCATAC...AAAGATGGCTGAAGAGAGAGACAGACACAGAGAGAGACAGATAGTAAGGGATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | ATGTGCTGGCAAAGCCTCAGAGGAGACAGCTATATCTaGGTCCTGTCAGCAAAATCTTGTTGGTGTATGGGT | + |
|
Preference number: 4 (lower is better) Translates to: MCWQSLRGDSYI*VLSAKSCWCMG Trigger: ACCCATACACCAACAAGATTTTGCTGACAGGACCAAGATATAGCTGTCTCCTCTGAGGCTTTGCCAGCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR TCA 90 bp | CTATCCCTTACTATCTGTCTCTCTCTGTGTCTGTCTCTCTCTTCAGCCATCTTTGAGACAGGAGATTTGTaGCATACCTCATCCAGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LSLTICLSLCLSLSSAIFETGDL*HTSSRD Trigger: GTCTCTGGATGAGGTATGTCACAAATCTCCTGTCTC...AAAGATGGCTGAAGAGAGAGACAGACACAGAGAGAGACAGATAGTAAGGGATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TTTTGGGATGAGTGTACATCATTGGCAGTGGTCCAGTaGCTGGGACTGCTTCTTTTGCGTGATTACGAATTC | + |
|
Preference number: 4 (lower is better) Translates to: FWDECTSLAVVQ*LGLLLLRDYEF Trigger: GAATTCGTAATCACGCAAAAGAAGCAGTCCCAGCAACTGGACCACTGCCAATGATGTACACTCATCCCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TTTGCATCCAATGACTGTGAGCGTACACTTCTGTATTaGTTATGTGCTGGCAAAGCCTCAGAGGAGACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FASNDCERTLLY*LCAGKASEETA Trigger: AGCTGTCTCCTCTGAGGCTTTGCCAGCACATAACAAATACAGAAGTGTACGCTCACAGTCATTGGATGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TTCTGGGCATCTAGGCAGTGTCATACATGGGCTCCTTaGTGTTTTGTGGGCCTCAAGATAGATAAGTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: FWASRQCHTWAP*CFVGLKIDKSL Trigger: CAATGACTTATCTATCTTGAGGCCCACAAAACACAAAGGAGCCCATGTATGACACTGCCTAGATGCCCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR TCA 90 bp | ATAAGTCATTGGTTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATCAAAGCAAAAGGATCTaGAGAGCCAACATTTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: ISHWLLTSTSSEPSLLQHQSKRI*RANISM Trigger: CATGGAAATGTTGGCTCTTCAGATCCTTTTGCTTTG...ATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAACCAATGACTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | CATTGGTTGCTCACATCCACAAGCTCTGAGCCATCATaGCTGCAGCATAACTTGAAGACAAGTCATGTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: HWLLTSTSSEPS*LQHNLKTSHVV Trigger: TACAACATGACTTGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAACCAATG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR TCA 90 bp | CCCTGTATACTTGCCTATAGTTCAAATGCACAATCTCTACTAATTCCCTCTACACATTCATGTCCACACTaGCCCCAGAGATGGAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: PCILAYSSNAQSLLIPSTHSCPH*PQRWSI Trigger: TATGCTCCATCTCTGGGGTCAGTGTGGACATGAATG...TGTAGAGGGAATTAGTAGAGATTGTGCATTTGAACTATAGGCAAGTATACAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TTCTTTAAGCTCCACCTACTATTTTGCTATGTGCCTTaGCCTCTGGTAACAACAGGTACTAGAGAAAGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: FFKLHLLFCYVP*PLVTTGTRESL Trigger: CAGGCTTTCTCTAGTACCTGTTGTTACCAGAGGCAAAGGCACATAGCAAAATAGTAGGTGGAGCTTAAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR CCA 90 bp | TCAGGGTTCTTTAAGCTCCACCTACTATTTTGCTATGTGCCTTTGCCTCTGGTAGGAGTCTGTCAAGATTaGAGAGAAGTTATGGACAAA | + |
|
Preference number: 4 (lower is better) Translates to: SGFFKLHLLFCYVPLPLVGVCQD*REVMDK Trigger: TTTGTCCATAACTTCTCTCCAATCTTGACAGACTCC...TACCAGAGGCAAAGGCACATAGCAAAATAGTAGGTGGAGCTTAAAGAACCCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | TCCACAAGCTCTGAGCCATCATTGCTGCAGCATAACTaGAAGACAAGTCATGTTGTATTTGGAATGCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: STSSEPSLLQHN*KTSHVVFGMLC Trigger: ACAAAGCATTCCAAATACAACATGACTTGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR CCA 90 bp | TCAGGGTTCTTTAAGCTCCACCTACTATTTTGCTATGTGCCTTTGCCTCTGGTAGAGCCAACATTTCCATaGTTTTCAGGGTTTTATTCT | + |
|
Preference number: 4 (lower is better) Translates to: SGFFKLHLLFCYVPLPLVEPTFP*FSGFYS Trigger: AGAATAAAACCCTGAAAACCATGGAAATGTTGGCTC...TACCAGAGGCAAAGGCACATAGCAAAATAGTAGGTGGAGCTTAAAGAACCCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | GGTCCTTCCTTCAGTCTCAGCACCAAATTAGAAAGATaGCATACTAGCAACTTAATAGTACTCCTGAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: GPSFSLSTKLER*HTSNLIVLLKP Trigger: AGGTTTCAGGAGTACTATTAAGTTGCTAGTATGCAATCTTTCTAATTTGGTGCTGAGACTGAAGGAAGGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | AGTCATTTGTTTGTTTTGCCAGTAGTAACTAGGTCTTaGGGATATCAAGTTTCCAATTTCTGGGCATCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SHLFVLPVVTRS*GYQVSNFWASR Trigger: CCTAGATGCCCAGAAATTGGAAACTTGATATCCCAAAGACCTAGTTACTACTGGCAAAACAAACAAATGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS-3UTR TCA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATCCTCGAGCAACTAGGTaGAAGAAGTATGCAAGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: YMSNAIPFPRFLSENPVYPRATR*KKYASL Trigger: TAAACTTGCATACTTCTTTCACCTAGTTGCTCGAGG...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| 3UTR CAA 72 bp | GAGCACAGAAAATCATTAGGAATGTATTCATCATACTaGAGTCATTTGTTTGTTTTGCCAGTAGTAACTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EHRKSLGMYSSY*SHLFVLPVVTR Trigger: CCTAGTTACTACTGGCAAAACAAACAAATGACTCAAGTATGATGAATACATTCCTAATGATTTTCTGTGCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS TCA 90 bp | CTGAGGACACAGGTGGAGCACATGATTGTGCCTCGAGCAACTAGGTaGAAGAAGTATGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LRTQVEHMIVPRATR*KKYASLHLRSVGGF Trigger: GAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACCTAGTTGCTCGAGGCACAATCATGTGCTCCACCTGTGTCCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 90 bp | TGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTGATTaGCCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTTTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: WCGLLWSQHGLCCFD*PYVCGSFSGGVCLG Trigger: ACCTAAACAGACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 90 bp | AGGATGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTaGTTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: RMVWAALVSAWPLLF*LTLCMWFILWWCLF Trigger: AAACAGACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCATCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CCA 90 bp | ATGGAGACACTGGTCCAGGCCATGATATTAAGGAATATGATGTCATaGGAAAACCGCAAGACATTCATGTCCACACTGACCCCAGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: METLVQAMILRNMMS*ENRKTFMSTLTPEM Trigger: CATCTCTGGGGTCAGTGTGGACATGAATGTCTTGCGGTTTTCCCATGACATCATATTCCTTAATATCATGGCCTGGACCAGTGTCTCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 90 bp | GAGGTCAGTTGGAGGCTTCCTGGGAACAATATCAATAAGGTCATATaGATATGCAAACAGAAGGAGCATGAATGCATTGGCCACAGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: EVSWRLPGNNINKVI*ICKQKEHECIGHSQ Trigger: TTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGACCTTATTGATATTGTTCCCAGGAAGCCTCCAACTGACCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS GCA 90 bp | AGTCTGTCAAGATTGGAGAGAAGTTATGGACAAACAGAAGGATGTTaGCCACAGTCCCAACCACAACATGGCAAAGCAAAAGGATCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: SLSRLERSYGQTEGC*PQSQPQHGKAKGSE Trigger: TTCAGATCCTTTTGCTTTGCCATGTTGTGGTTGGGACTGTGGGCAACATCCTTCTGTTTGTCCATAACTTCTCTCCAATCTTGACAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS-3UTR CAA 90 bp | TTGCTCACATCCACAAGCTCTGAGCCATCATTGCTGCAGCATAACTTGAAGACATGGAGTCTGTCAAGATaGGAGAGAAGTTATGGACAA | + |
|
Preference number: 5 (lower is better) Translates to: LLTSTSSEPSLLQHNLKTWSLSR*ERSYGQ Trigger: TTGTCCATAACTTCTCTCCAATCTTGACAGACTCCA...TGTCTTCAAGTTATGCTGCAGCAATGATGGCTCAGAGCTTGTGGATGTGAGCAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS TCA 90 bp | TTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTTTAGGTaGATCACCATGGAGACACTGGTCCAGGCCATGATATTAAGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: LTLCMWFILWWCLFR*ITMETLVQAMILRN Trigger: ATTCCTTAATATCATGGCCTGGACCAGTGTCTCCATGGTGATTCACCTAAACAGACACCACCAGAGAATGAACCACATACATAAGGTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS-3UTR CAA 90 bp | TACATGTCAAATGCTATCCCCTTTCCTAGATTTCTCTCTGAAAATCCAGTATATATGGAGCATATCGAATaGCCTTTAGAATCAGAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: YMSNAIPFPRFLSENPVYMEHIE*PLESES Trigger: TGACTCTGATTCTAAAGGCAATTCGATATGCTCCAT...ATATACTGGATTTTCAGAGAGAAATCTAGGAAAGGGGATAGCATTTGACATGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236262.2 |
||
| CDS CAA 90 bp | CAGGATGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTaGATTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: QDGVGCSGLSMASVV*IDLMYVVHSLVVSV Trigger: AACAGACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCATCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 72 bp | TGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTaGTTGACCTTATGTATGTGGTTCATTCTCTGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: WAALVSAWPLLF*LTLCMWFILWW Trigger: CCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CCA 72 bp | GACCTGTATGGGCCTCAGTCTGGAGTCTGTCAAGATTaGAGAGAAGTTATGGACAAACAGAAGGATGTTGCC | + |
|
Preference number: 6 (lower is better) Translates to: DLYGPQSGVCQD*REVMDKQKDVA Trigger: GGCAACATCCTTCTGTTTGTCCATAACTTCTCTCCAATCTTGACAGACTCCAGACTGAGGCCCATACAGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CAA 90 bp | GAATATGCAAACAGAAGGAGCATGAATGCATTGGCCACAGCCAAGTaGATTAGAATGACCTGTATGGGCCTCAGTCTGGAGTCTGTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: EYANRRSMNALATAK*IRMTCMGLSLESVK Trigger: CTTGACAGACTCCAGACTGAGGCCCATACAGGTCATTCTAATCAACTTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 72 bp | TGTATGTGGTTCATTCTCTGGTGGTGTCTGTTTAGGTaGATCACCATGGAGACACTGGTCCAGGCCATGATA | + |
|
Preference number: 6 (lower is better) Translates to: CMWFILWWCLFR*ITMETLVQAMI Trigger: TATCATGGCCTGGACCAGTGTCTCCATGGTGATTCACCTAAACAGACACCACCAGAGAATGAACCACATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 72 bp | CTGCTCTGGTCTCAGCATGGCCTCTGTTGTTTTGATTaGCCTTATGTATGTGGTTCATTCTCTGGTGGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LLWSQHGLCCFD*PYVCGSFSGGV Trigger: GACACCACCAGAGAATGAACCACATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CAA 72 bp | ATGTCCACACTGACCCCAGAGATGGAGCATATCGAATaGCCTTTAGAATCAGAGTCATTGTGTGTTTTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: MSTLTPEMEHIE*PLESESLCVFC Trigger: ACAGAAAACACACAATGACTCTGATTCTAAAGGCAATTCGATATGCTCCATCTCTGGGGTCAGTGTGGACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CAA 90 bp | TCAATAAGGTCATATGAATATGCAAACAGAAGGAGCATGAATGCATaGGCCACAGCCAAGTTGATTAGAATGACCTGTATGGGCCTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: SIRSYEYANRRSMNA*ATAKLIRMTCMGLS Trigger: ACTGAGGCCCATACAGGTCATTCTAATCAACTTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGACCTTATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 72 bp | GAGCAACTAGGTGAAAGAAGTATGCAAGTTTACATTTaGGGTCAGTTGGAGGCTTCCTGGGAACAATATCAA | + |
|
Preference number: 6 (lower is better) Translates to: EQLGERSMQVYI*GQLEASWEQYQ Trigger: TTGATATTGTTCCCAGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACCTAGTTGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS CAA 72 bp | TCATATGAATATGCAAACAGAAGGAGCATGAATGCATaGGCCACAGCCAAGTTGATTAGAATGACCTGTATG | + |
|
Preference number: 6 (lower is better) Translates to: SYEYANRRSMNA*ATAKLIRMTCM Trigger: CATACAGGTCATTCTAATCAACTTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||
| CDS TCA 72 bp | ATGGATTTCCATACTGACATGATGTGCACAGAACAATaGCCCTTACAATCCCTAAATATCAACAGTAAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: MDFHTDMMCTEQ*PLQSLNINSKG Trigger: TCCCTTACTGTTGATATTTAGGGATTGTAAGGGTCATTGTTCTGTGCACATCATGTCAGTATGGAAATCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173782.4 ENSMUST00000236262.2 |
||