Pregenerated sensors for VMN1R54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047203Ensembl transcript IDs: ENSMUST00000058039.3, ENSMUST00000226921.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTAAGCTTTTCCTGCTCCAAGTCATCCACACAGACCCTGTTCTaGGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCTCATCC | + |
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Preference number: 1 (lower is better) Translates to: SLSFSCSKSSTQTLF*VTLMSVSMAASCSS Trigger: GGATGAGCATGAAGCTGCCATGCTGACTGACATGAGAGTCACGCAGAACAGGGTCTGTGTGGATGACTTGGAGCAGGAAAAGCTTAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 90 bp | GCAGTCTGCTTTTGTTTCTTCACATGCGAGTCTCTAAGCTTTTCCTaGTCCAAGTCATCCACACAGACCCTGTTCTGCGTGACTCTCATG | + |
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Preference number: 1 (lower is better) Translates to: AVCFCFFTCESLSFS*SKSSTQTLFCVTLM Trigger: CATGAGAGTCACGCAGAACAGGGTCTGTGTGGATGACTTGGAGCAGGAAAAGCTTAGAGACTCGCATGTGAAGAAACAAAAGCAGACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR TCA 90 bp | GTTAGATCCCCTTGGATTGTAGTTACAGACAGCTGTGAGCCTTTATGTGGGTGCCATGACCTTCCTGCCTaGGCTGAGCACTGCAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: VRSPWIVVTDSCEPLCGCHDLPA*AEHCSL Trigger: CAGACTGCAGTGCTCAGCTCAGGCAGGAAGGTCATG...GCACCCACATAAAGGCTCACAGCTGTCTGTAACTACAATCCAAGGGGATCTAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGCGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCTCATCCATGTGTAGCACTTTTCTTCACTaGAGCTCATACAAACTCCTC | + |
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Preference number: 2 (lower is better) Translates to: FCVTLMSVSMAASCSSMCSTFLH*SSYKLL Trigger: GAGGAGTTTGTATGAGCTTCAGTGAAGAAAAGTGCT...ACACATGGATGAGCATGAAGCTGCCATGCTGACTGACATGAGAGTCACGCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCTAGCATGGCAGCTTCATaGTCATCCATGTGTTACTGT | + |
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Preference number: 2 (lower is better) Translates to: MYIIATICTTTSSSCTTSSMAAS*SSMCYC Trigger: ACAGTAACACATGGATGAGCATGAAGCTGCCATGCT...AGATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACAT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR CCA 90 bp | CATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCAGAAACTGTTTTTGTTaGCATCTGTCTATCTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: HVHYCHHLHHYFFLMHNIRNCFC*HLSISL Trigger: GAGGGAGATAGACAGATGCCAACAAAAACAGTTTCT...GATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR TCA 72 bp | CAGACAGCTGTGAGCCTTTATGTGGGTGCTGGGAATTaGACATGGGTCTTCTGCAAAGGCAGCCCGTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: QTAVSLYVGAGN*TWVFCKGSPFS Trigger: AGAGAACGGGCTGCCTTTGCAGAAGACCCATGTTCAATTCCCAGCACCCACATAAAGGCTCACAGCTGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 72 bp | GCCATGACCTTCCTGCCTGAGCTGAGCACTGCAGTCTaGTTTTGTTTCTTCACATGCGAGTCTCTAAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: AMTFLPELSTAV*FCFFTCESLSF Trigger: AAAGCTTAGAGACTCGCATGTGAAGAAACAAAAGCAGACTGCAGTGCTCAGCTCAGGCAGGAAGGTCATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 72 bp | TTTTGTTTCTTCACATGCGAGTCTCTAAGCTTTTCCTaGTCCAAGTCATCCACACAGACCCTGTTCTGCGTG | + |
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Preference number: 3 (lower is better) Translates to: FCFFTCESLSFS*SKSSTQTLFCV Trigger: CACGCAGAACAGGGTCTGTGTGGATGACTTGGAGCAGGAAAAGCTTAGAGACTCGCATGTGAAGAAACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 72 bp | CTACTGCTTGGAGTCATGTACATTATTGCCACCATCTaGACCACTACTTCTTCCTCATGCACAACATCTGGC | + |
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Preference number: 3 (lower is better) Translates to: LLLGVMYIIATI*TTTSSSCTTSG Trigger: GCCAGATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACATGACTCCAAGCAGTAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 72 bp | ATTGTAGTTACAGACAGCTGTGAGCCTTTATGTGGGTaGTGGGAATTGAACATGGGTCTTCTGCAAAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: IVVTDSCEPLCG*WELNMGLLQRQ Trigger: CTGCCTTTGCAGAAGACCCATGTTCAATTCCCAGCACCCACATAAAGGCTCACAGCTGTCTGTAACTACAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR CCA 72 bp | TGGTGCCTGCAGAGACCAGAAACTGTTAGATCCCCTTaGATTGTAGTTACAGACAGCTGTGAGCCTTTATGT | + |
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Preference number: 3 (lower is better) Translates to: WCLQRPETVRSP*IVVTDSCEPLC Trigger: ACATAAAGGCTCACAGCTGTCTGTAACTACAATCCAAGGGGATCTAACAGTTTCTGGTCTCTGCAGGCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR CAA 90 bp | CATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCCACTGCAGTCTGCTTTaGTTTCTTCACATGCGAGTC | + |
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Preference number: 3 (lower is better) Translates to: HVHYCHHLHHYFFLMHNIHCSLL*FLHMRV Trigger: GACTCGCATGTGAAGAAACAAAAGCAGACTGCAGTG...GATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR GCA 72 bp | TCTATCTCCCTCTCTATTTCTCTGTCTCTGTCTCTCTaGATTTCACTCTCTTTCTCTGTCATGCTCGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SISLSISLSLSL*ISLSFSVMLVC Trigger: ACACACGAGCATGACAGAGAAAGAGAGTGAAATGCAGAGAGACAGAGACAGAGAAATAGAGAGGGAGATAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR-3UTR CAA 90 bp | ATGCTCATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGAATACAAGTTGTCATAAATaGCTATGGATAGTTCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: MLIHVLLCAESPSLLKLNTSCHK*LWIVQA Trigger: GGCCTGAACTATCCATAGCAATTTATGACAACTTGT...ATTCAGCTTTAAAAGAGAAGGGGATTCTGCACACAGTAACACATGGATGAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| 3UTR CAA 72 bp | ACAGACAGCTGTGAGCCTTTATGTGGGTGCTGGGAATaGAACATGGGTCTTCTGCAAAGGCAGCCCGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TDSCEPLCGCWE*NMGLLQRQPVL Trigger: GAGAACGGGCTGCCTTTGCAGAAGACCCATGTTCAATTCCCAGCACCCACATAAAGGCTCACAGCTGTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CCA 90 bp | CGAGTCTCTAAGCTTTTCCTGCTCCAAGTCATCCACACAGACCCTGTTCTGCGTGGAAAGAGTAACTCATaGGTGCCAGAGAGCACGATG | + |
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Preference number: 4 (lower is better) Translates to: RVSKLFLLQVIHTDPVLRGKSNS*VPESTM Trigger: CATCGTGCTCTCTGGCACCCATGAGTTACTCTTTCC...ACGCAGAACAGGGTCTGTGTGGATGACTTGGAGCAGGAAAAGCTTAGAGACTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR TCA 90 bp | ATGACCTTCCTGCCTGAGCTGAGCACTGCAGTCTGCTTTTGTTTCTTCACATGCGCCCACGAATGTACTTaGAGATGTGGAAGAGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: MTFLPELSTAVCFCFFTCAHECT*RCGREE Trigger: TTCTTCTCTTCCACATCTTCAAGTACATTCGTGGGC...GCATGTGAAGAAACAAAAGCAGACTGCAGTGCTCAGCTCAGGCAGGAAGGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR GCA 90 bp | ATGACCTTCCTGCCTGAGCTGAGCACTGCAGTCTGCTTTTGTTTCTTCACATGCTTATGTAGGAGACAATaGTGTCCAAGGTGTACATCA | + |
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Preference number: 4 (lower is better) Translates to: MTFLPELSTAVCFCFFTCLCRRQ*CPRCTS Trigger: TGATGTACACCTTGGACAGCATTGTCTCCTACATAA...GCATGTGAAGAAACAAAAGCAGACTGCAGTGCTCAGCTCAGGCAGGAAGGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CCA 90 bp | TTGCTATGGATAGTTCAGGCCATGACAAATAATAGTCACTTTACATTTCCCCCATTGAGAGTGACAGCCTaGAGGATGCTGAGCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLWIVQAMTNNSHFTFPPLRVTA*RMLSRL Trigger: CAGCCTGCTCAGCATCCTCCAGGCTGTCACTCTCAA...TGGGGGAAATGTAAAGTGACTATTATTTGTCATGGCCTGAACTATCCATAGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR GCA 90 bp | CATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCATATGTCTGGACCTCTaGCCACGAATGTACTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HVHYCHHLHHYFFLMHNIICLDL*PRMYLK Trigger: CTTCAAGTACATTCGTGGGCAGAGGTCCAGACATAT...GATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACATG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR TCA 90 bp | TTGCTATGGATAGTTCAGGCCATGACAAATAATAGTCACTTTACATTTCCCCCAGCACAAAGAAGCTCATaGGGCACAGAATGGTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LLWIVQAMTNNSHFTFPPAQRSS*GTEWSS Trigger: TGAGGACCATTCTGTGCCTCATGAGCTTCTTTGTGC...TGGGGGAAATGTAAAGTGACTATTATTTGTCATGGCCTGAACTATCCATAGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR GCA 90 bp | TTCATGCTCATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGTGGAGAAATTGGGATTaGTTTTTATGTCTGCCTAGG | + |
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Preference number: 4 (lower is better) Translates to: FMLIHVLLCAESPSLLKLWRNWD*FLCLPR Trigger: CCTAGGCAGACATAAAAAGCAATCCCAATTTCTCCA...CAGCTTTAAAAGAGAAGGGGATTCTGCACACAGTAACACATGGATGAGCATGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CCA 90 bp | TTCATGCTCATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGGAAAAGCTGGTGATATaGAGAAATTGGGATTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FMLIHVLLCAESPSLLKLEKLVI*RNWDCF Trigger: AAAGCAATCCCAATTTCTCCATATCACCAGCTTTTC...CAGCTTTAAAAGAGAAGGGGATTCTGCACACAGTAACACATGGATGAGCATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CCA 90 bp | ATGAAGACTACCACAAGTTGTCATAAATTGCTATGGATAGTTCAGGCCATGACAATGTACTTGAAGATGTaGAAGAGAAGAAGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MKTTTSCHKLLWIVQAMTMYLKM*KRRRKL Trigger: CAGCTTCCTTCTTCTCTTCCACATCTTCAAGTACAT...TGTCATGGCCTGAACTATCCATAGCAATTTATGACAACTTGTGGTAGTCTTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CCA 90 bp | ATGCTCATCCATGTGTTACTGTGTGCAGAATCCCCTTCTCTTTTAAAGCTGAATGTGATATGGAGAAATTaGGATTGCTTTTTATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: MLIHVLLCAESPSLLKLNVIWRN*DCFLCL Trigger: CAGACATAAAAAGCAATCCCAATTTCTCCATATCAC...ATTCAGCTTTAAAAGAGAAGGGGATTCTGCACACAGTAACACATGGATGAGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR GCA 90 bp | ATAATAGTCACTTTACATTTCCCCCAAAGATACAGTGAGAAGTACAGAACACTTTGCAGTTATATATGTTaGAAGGGGACTGCTAATGAA | + |
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Preference number: 4 (lower is better) Translates to: IIVTLHFPQRYSEKYRTLCSYIC*KGTANE Trigger: TTCATTAGCAGTCCCCTTGCAACATATATAACTGCA...AAGTGTTCTGTACTTCTCACTGTATCTTTGGGGGAAATGTAAAGTGACTATTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR GCA 90 bp | ATAATAGTCACTTTACATTTCCCCCAAAGATACAGTGAGAAGTACAGAACACTTATTGCTTTTTATGTCTaGCTAGGAAAGTCACCATGT | + |
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Preference number: 4 (lower is better) Translates to: IIVTLHFPQRYSEKYRTLIAFYV*LGKSPC Trigger: ACATGGTGACTTTCCTAGGCAGACATAAAAAGCAAT...AAGTGTTCTGTACTTCTCACTGTATCTTTGGGGGAAATGTAAAGTGACTATTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | TTCTGCGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCTCATCCATGTGTCAGGAGTTTCTGGGATaGAGAGTGACAGCCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: FCVTLMSVSMAASCSSMCQEFLG*RVTAWR Trigger: CCTCCAGGCTGTCACTCTCAATCCCAGAAACTCCTG...ACACATGGATGAGCATGAAGCTGCCATGCTGACTGACATGAGAGTCACGCAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | ATGGGTCTTCTGCAAAGGCAGCCCGTTCTCTTCACCCCTGAGCCGTGTCTCCAGTGTGGAGATTTACGCTaGAACTTTTCTAAGCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: MGLLQRQPVLFTPEPCLQCGDLR*NFSKQE Trigger: CTCCTGCTTAGAAAAGTTCAAGCGTAAATCTCCACA...CTGGAGACACGGCTCAGGGGTGAAGAGAACGGGCTGCCTTTGCAGAAGACCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS CCA 90 bp | AAGATGTCTGTAGCTACTAAACTCATGGCTATCAGCATCACCAGGTaGATTAGGGACAAGAGACCAATGGGCAGGTCAATATGTCTGGAC | + |
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Preference number: 5 (lower is better) Translates to: KMSVATKLMAISITR*IRDKRPMGRSICLD Trigger: GTCCAGACATATTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTGGTGATGCTGATAGCCATGAGTTTAGTAGCTACAGACATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | CATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCAGAAGAAGGAAGCTGTaGCCTGAGATCCCAATGCCA | + |
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Preference number: 5 (lower is better) Translates to: HVHYCHHLHHYFFLMHNIRRRKL*PEIPMP Trigger: TGGCATTGGGATCTCAGGCAACAGCTTCCTTCTTCT...GATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | TTCTGCGTGACTCTCATGTCAGTCAGCATGGCAGCTTCATGCTCATCCATGTGTAAGGATATAACACATTaGCATGTGGTGTCACCCCAT | + |
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Preference number: 5 (lower is better) Translates to: FCVTLMSVSMAASCSSMCKDITH*HVVSPH Trigger: ATGGGGTGACACCACATGCAAATGTGTTATATCCTT...ACACATGGATGAGCATGAAGCTGCCATGCTGACTGACATGAGAGTCACGCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | ATGTACATTATTGCCACCATCTGCACCACTACTTCTTCCTCATGCACAACATCTTGCCCACGAATGTACTaGAAGATGTGGAAGAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: MYIIATICTTTSSSCTTSCPRMY*KMWKRR Trigger: TCTTCTCTTCCACATCTTCAAGTACATTCGTGGGCA...AGATGTTGTGCATGAGGAAGAAGTAGTGGTGCAGATGGTGGCAATAATGTACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS-3UTR CAA 90 bp | ATGAAGACTACCACAAGTTGTCATAAATTGCTATGGATAGTTCAGGCCATGACAGGTGATATGGAGAAATaGGGATTGCTTTTTATGTCT | + |
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Preference number: 5 (lower is better) Translates to: MKTTTSCHKLLWIVQAMTGDMEK*GLLFMS Trigger: AGACATAAAAAGCAATCCCAATTTCTCCATATCACC...TGTCATGGCCTGAACTATCCATAGCAATTTATGACAACTTGTGGTAGTCTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226921.2 |
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| CDS CCA 72 bp | TCAGCATCACCAGGTGGATTAGGGACAAGAGACCAATaGGCAGGTCAATATGTCTGGACCTCTGCCCACGAA | + |
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Preference number: 6 (lower is better) Translates to: SASPGGLGTRDQ*AGQYVWTSAHE Trigger: TTCGTGGGCAGAGGTCCAGACATATTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTGGTGATGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS CCA 72 bp | TGTCTGGACCTCTGCCCACGAATGTACTTGAAGATGTaGAAGAGAAGAAGGAAGCTGTTGCCTGAGATCCCA | + |
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Preference number: 6 (lower is better) Translates to: CLDLCPRMYLKM*KRRRKLLPEIP Trigger: TGGGATCTCAGGCAACAGCTTCCTTCTTCTCTTCCACATCTTCAAGTACATTCGTGGGCAGAGGTCCAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS CCA 72 bp | GTAGCTACTAAACTCATGGCTATCAGCATCACCAGGTaGATTAGGGACAAGAGACCAATGGGCAGGTCAATA | + |
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Preference number: 6 (lower is better) Translates to: VATKLMAISITR*IRDKRPMGRSI Trigger: TATTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTGGTGATGCTGATAGCCATGAGTTTAGTAGCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS GCA 72 bp | TCTGACCATCATCGATACTTCTTATGTAGGAGACAATaGTGTCCAAGGTGTACATCAGCACAAAGAAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SDHHRYFLCRRQ*CPRCTSAQRSS Trigger: TGAGCTTCTTTGTGCTGATGTACACCTTGGACAGCATTGTCTCCTACATAAGAAGTATCGATGATGGTCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS GCA 72 bp | TATAAAAACTGTGAGATGGAAAGAGTAACTCATGGGTaGCAGAGAGCACGATGTAGTGATATATGTAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: YKNCEMERVTHG*QRARCSDICKA Trigger: AGCTTTACATATATCACTACATCGTGCTCTCTGGCACCCATGAGTTACTCTTTCCATCTCACAGTTTTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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| CDS TCA 72 bp | CAGAGAGCACGATGTAGTGATATATGTAAAGCTAGGTaGGGTCAAATTAGACTTTGCAGTTATATATGTTGC | + |
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Preference number: 6 (lower is better) Translates to: QRARCSDICKAR*GQIRLCSYICC Trigger: GCAACATATATAACTGCAAAGTCTAATTTGACCTCACCTAGCTTTACATATATCACTACATCGTGCTCTCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058039.3 ENSMUST00000226921.2 |
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