Pregenerated sensors for VMN1R53 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057697Ensembl transcript IDs: ENSMUST00000076086.3
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CACCATATAATGAACCATAGATCTGATGACAGCATAATGGATTATACTCTTGGTGAAAGGCTGGTCCTGTaGAGGTGCTGGGCTTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HHIMNHRSDDSIMDYTLGERLVL*RCWACF Trigger: GAAGCAAGCCCAGCACCTTCACAGGACCAGCCTTTC...ACCAAGAGTATAATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | CACCATATAATGAACCATAGATCTGATGACAGCATAATGGATTATACTCTTGGTTTGTGCCTCCATAGGTaGGCTACCATGTACCCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: HHIMNHRSDDSIMDYTLGLCLHR*ATMYPP Trigger: CGGAGGGTACATGGTAGCTCACCTATGGAGGCACAA...ACCAAGAGTATAATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATCTCTGGGGATGCTTTTaGAGAAAGGCTGGTCCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: AECLHHIMNHRSDDSIMDLWGCF*RKAGPV Trigger: CACAGGACCAGCCTTTCTTCAAAAGCATCCCCAGAG...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | GCCGCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGACTCAGAGGTATAAGTaGGCAGGACTGAGTAACATA | + |
|
Preference number: 4 (lower is better) Translates to: AAECLHHIMNHRSDDSIMTQRYK*AGLSNI Trigger: TATGTTACTCAGTCCTGCTCACTTATACCTCTGAGT...CATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGCGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATCTTCAGAGAATAAGGTaGTTTTCAGGTTTATGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: AECLHHIMNHRSDDSIMDLQRIR*FSGLCQ Trigger: CTGACATAAACCTGAAAATCACCTTATTCTCTGAAG...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | CATATAATGAACCATAGATCTGATGACAGCATAATGGATTATACTCTTGGTCCAGGGGTAAGCAATAATTaGTATGAAGAGGTGACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: HIMNHRSDDSIMDYTLGPGVSNN*YEEVTV Trigger: AACAGTCACCTCTTCATATCAATTATTGCTTACCCC...TGGACCAAGAGTATAATCCATTATGCTGTCATCAGATCTATGGTTCATTATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR CCA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATAGGTTTATGTCAGTGTaGAGTAAGTTGGCTTTATTC | + |
|
Preference number: 4 (lower is better) Translates to: AECLHHIMNHRSDDSIMDRFMSV*SKLALF Trigger: GAATAAAGCCAACTTACTCCACACTGACATAAACCT...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR CCA 90 bp | CATATAATGAACCATAGATCTGATGACAGCATAATGGATTATACTCTTGGTCCAATAAGCAGCATTAGTTaGGTTAGGGAGAAGAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HIMNHRSDDSIMDYTLGPISSIS*VREKKA Trigger: TGCTTTCTTCTCCCTAACCCAACTAATGCTGCTTAT...TGGACCAAGAGTATAATCCATTATGCTGTCATCAGATCTATGGTTCATTATATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR CCA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATGCACAGGAGATGTGTTaGAGAGATTTATGTTTAAAC | + |
|
Preference number: 4 (lower is better) Translates to: AECLHHIMNHRSDDSIMDAQEMC*RDLCLN Trigger: GTTTAAACATAAATCTCTCCAACACATCTCCTGTGC...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR TCA 90 bp | CACCATATAATGAACCATAGATCTGATGACAGCATAATGGATTATACTCTTGGTATAAGTGAGCAGGACTaGGTAACATACATGAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: HHIMNHRSDDSIMDYTLGISEQD*VTYMKF Trigger: GAATTTCATGTATGTTACTCAGTCCTGCTCACTTAT...ACCAAGAGTATAATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS CCA 90 bp | AGATCAATGGGCTTAGGCCTGTTCTCACCAAGGAGCATGCAGAGATaGGCAAAAATAAGGATACTGTTAGCTGAGATCCCAACACTCACT | + |
|
Preference number: 5 (lower is better) Translates to: RSMGLGLFSPRSMQR*AKIRILLAEIPTLT Trigger: AGTGAGTGTTGGGATCTCAGCTAACAGTATCCTTATTTTTGCCCATCTCTGCATGCTCCTTGGTGAGAACAGGCCTAAGCCCATTGATCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR CAA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATCAAATAGATAAGGGATaGGCATGTGGTAGAATCCCA | + |
|
Preference number: 5 (lower is better) Translates to: AECLHHIMNHRSDDSIMDQIDKG*ACGRIP Trigger: TGGGATTCTACCACATGCCAATCCCTTATCTATTTG...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS-3UTR CAA 90 bp | GCAGAATGTTTGCACCATATAATGAACCATAGATCTGATGACAGCATAATGGATAATATTGAGCCATCCTaGAACTTCATTCTTGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: AECLHHIMNHRSDDSIMDNIEPS*NFILEW Trigger: CCACTCAAGAATGAAGTTCAAGGATGGCTCAATATT...ATCCATTATGCTGTCATCAGATCTATGGTTCATTATATGGTGCAAACATTCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||
| CDS CCA 72 bp | GGCTTAGGCCTGTTCTCACCAAGGAGCATGCAGAGATaGGCAAAAATAAGGATACTGTTAGCTGAGATCCCA | + |
|
Preference number: 6 (lower is better) Translates to: GLGLFSPRSMQR*AKIRILLAEIP Trigger: TGGGATCTCAGCTAACAGTATCCTTATTTTTGCCCATCTCTGCATGCTCCTTGGTGAGAACAGGCCTAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076086.3 |
||