Pregenerated sensors for VMN1R50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094553Ensembl transcript IDs: ENSMUST00000081706.2, ENSMUST00000089417.8, ENSMUST00000226577.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTaGTCCCACATCCTAACACCACCATACAGTAGCTATACCTACCAT | + |
|
Preference number: 1 (lower is better) Translates to: HISPFLIPQHGKNEI*SHILTPPYSSYTYH Trigger: ATGGTAGGTATAGCTACTGTATGGTGGTGTTAGGATGTGGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CCA 90 bp | TTTATTTTTAAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATaGCAAGAACGAGATCTGATCCCACATCCTAACACCACCATACAG | + |
|
Preference number: 1 (lower is better) Translates to: FIFKFSHFSIPHSSA*QERDLIPHPNTTIQ Trigger: CTGTATGGTGGTGTTAGGATGTGGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTTAAAAATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CCA 90 bp | TATTTTAAATCTGGCTATCTGTGCATGATTGTGCAAATGACAGTATaGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTGTGTGT | + |
|
Preference number: 1 (lower is better) Translates to: YFKSGYLCMIVQMTV*FSEYTSGSMSVCVC Trigger: ACACACACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCATGCACAGATAGCCAGATTTAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CCA 90 bp | TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCAAGAAGCTaGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACAGAAA | + |
|
Preference number: 1 (lower is better) Translates to: CSTMFIAALFIIARS*KESRYPSTEEWIQK Trigger: TTTCTGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR GCA 90 bp | ACAGTAGCTATACCTACCATTCACTATTTTAAATCTGGCTATCTGTaGATGATTGTGCAAATGACAGTATGGTTCTCTGAATATACATCT | + |
|
Preference number: 1 (lower is better) Translates to: TVAIPTIHYFKSGYL*MIVQMTVWFSEYTS Trigger: AGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCATGCACAGATAGCCAGATTTAAAATAGTGAATGGTAGGTATAGCTACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR TCA 90 bp | TACACTCAATTAGACACACACACACACACACACACACACACACATACACACACAACCTCATGTGATATCTaGAAGGTCATGTGGTTTAAT | + |
|
Preference number: 2 (lower is better) Translates to: YTQLDTHTHTHTHTHTHTTSCDI*KVMWFN Trigger: ATTAAACCACATGACCTTTCAGATATCACATGAGGT...TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAATTGAGTGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR TCA 90 bp | AATAGCAAGAAGCTGGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACACAAACCCAGATCAATTaGGAACCCTGTCACAGATTT | + |
|
Preference number: 2 (lower is better) Translates to: NSKKLERIQISLNRRMDTQTQIN*EPCHRF Trigger: AAATCTGTGACAGGGTTCTCAATTGATCTGGGTTTG...TGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CAA 90 bp | GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTaGAATCATGTGATAATTGGCTCTCAAAACAATGTTTTCTTATGT | + |
|
Preference number: 2 (lower is better) Translates to: VFVCVCVCVCVCVCV*NHVIIGSQNNVFLC Trigger: ACATAAGAAAACATTGTTTTGAGAGCCAATTATCACATGATTCAACACACACACACACACACACACACACACACACACACACACAAACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGCTGATGACAACATCTTaGATTATATTCAGGGACTAT | + |
|
Preference number: 2 (lower is better) Translates to: KFSHFSIPHSSAWQERDLLMTTS*IIFRDY Trigger: ATAGTCCCTGAATATAATCCAAGATGTTGTCATCAG...CAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR CCA 90 bp | TACACTCAATTAGACACACACACACACACACACACACACACACATACACACACACTGATGACAACATCTTaGATTATATTCAGGGACTAT | + |
|
Preference number: 2 (lower is better) Translates to: YTQLDTHTHTHTHTHTHTLMTTS*IIFRDY Trigger: ATAGTCCCTGAATATAATCCAAGATGTTGTCATCAG...TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAATTGAGTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR TCA 90 bp | ATGATTGTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTACCTCATGTGATATCTaGAAGGTCATGTGGTTTAAT | + |
|
Preference number: 2 (lower is better) Translates to: MIVQMTVWFSEYTSGSMSTSCDI*KVMWFN Trigger: ATTAAACCACATGACCTTTCAGATATCACATGAGGT...ACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGAGGCAACCGAATTATTGGAAATGTCATAGATATCACATAGTTATATCATGGCAAACCCAGATCAATTaGGAACCCTGTCACAGATTT | + |
|
Preference number: 2 (lower is better) Translates to: LRQPNYWKCHRYHIVISWQTQIN*EPCHRF Trigger: AAATCTGTGACAGGGTTCTCAATTGATCTGGGTTTG...CCATGATATAACTATGTGATATCTATGACATTTCCAATAATTCGGTTGCCTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR TCA 90 bp | ATGATTGTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTCCAAATATAAACAACTaGGGCAACCGAATTATTGGA | + |
|
Preference number: 2 (lower is better) Translates to: MIVQMTVWFSEYTSGSMSPNINN*GNRIIG Trigger: TCCAATAATTCGGTTGCCTCAGTTGTTTATATTTGG...ACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR GCA 90 bp | CTGAGGCAACCGAATTATTGGAAATGTCATAGATATCACATAGTTATATCATGGAACTTTAATGCAATCTaGAAACCCAGATCAATTGAG | + |
|
Preference number: 2 (lower is better) Translates to: LRQPNYWKCHRYHIVISWNFNAI*KPRSIE Trigger: CTCAATTGATCTGGGTTTGCAGATTGCATTAAAGTT...CCATGATATAACTATGTGATATCTATGACATTTCCAATAATTCGGTTGCCTCAG 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR TCA 72 bp | CCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTaGTCCCACATCCTAACACCACCATACAGTAGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: PFLIPQHGKNEI*SHILTPPYSSY Trigger: ATAGCTACTGTATGGTGGTGTTAGGATGTGGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CCA 72 bp | AAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATaGCAAGAACGAGATCTGATCCCACATCCTAACACC | + |
|
Preference number: 3 (lower is better) Translates to: KFSHFSIPHSSA*QERDLIPHPNT Trigger: GGTGTTAGGATGTGGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTGCAAACCCAGATCAATaGAGAACCCTGTCACAGATT | + |
|
Preference number: 3 (lower is better) Translates to: VQMTVWFSEYTSGSMSVCANPDQ*RTLSQI Trigger: AATCTGTGACAGGGTTCTCAATTGATCTGGGTTTGC...ACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGGCAAACCCAGATCAATaGAGAACCCTGTCACAGATT | + |
|
Preference number: 3 (lower is better) Translates to: KFSHFSIPHSSAWQERDLANPDQ*RTLSQI Trigger: AATCTGTGACAGGGTTCTCAATTGATCTGGGTTTGC...CAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR TCA 72 bp | TCTGTGCATGATTGTGCAAATGACAGTATGGTTCTCTaGATATACATCTGGCTCCATGAGTGTGTGTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: SVHDCANDSMVL*IYIWLHECVCV Trigger: CACACACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCATGCACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CCA 72 bp | TCTGGCTATCTGTGCATGATTGTGCAAATGACAGTATaGTTCTCTGAATATACATCTGGCTCCATGAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: SGYLCMIVQMTV*FSEYTSGSMSV Trigger: CACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCATGCACAGATAGCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR GCA 72 bp | ATACCTACCATTCACTATTTTAAATCTGGCTATCTGTaGATGATTGTGCAAATGACAGTATGGTTCTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: IPTIHYFKSGYL*MIVQMTVWFSE Trigger: TTCAGAGAACCATACTGTCATTTGCACAATCATGCACAGATAGCCAGATTTAAAATAGTGAATGGTAGGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | GTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTAGGTTGCACAAAAGGTaGGTCCCCTCAGAAGCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: VQMTVWFSEYTSGSMSVCRLHKR*VPSEAC Trigger: ACAGGCTTCTGAGGGGACTCACCTTTTGTGCAACCT...ACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | GTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTAAGGATGCTGTTAGCTaGGATCCCAACACTCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: VQMTVWFSEYTSGSMSVCKDAVS*DPNTHF Trigger: GAAGTGAGTGTTGGGATCTCAGCTAACAGCATCCTT...ACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTTGAATCATGTGATAATTGGCTCTCAAAACAATTGGGCTTGTTCTCATaGAGGAGCTTGCAGAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: CVCVCVCVESCDNWLSKQLGLFS*RSLQRW Trigger: CCACCTCTGCAAGCTCCTTCATGAGAACAAGCCCAA...TTGTTTTGAGAGCCAATTATCACATGATTCAACACACACACACACACACACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTTGAATCATGTGATAATTGGCTCTCAAAACAACTCTGGGGATGCTTTTaGAGAAAGGCTGGTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CVCVCVCVESCDNWLSKQLWGCF*RKAGAV Trigger: CACAGCACCAGCCTTTCTTCAAAAGCATCCCCAGAG...TTGTTTTGAGAGCCAATTATCACATGATTCAACACACACACACACACACACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | GTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTAGGAGCTTGCAGAGGTaGACAACAAAAAGGATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: VQMTVWFSEYTSGSMSVCRSLQR*TTKRML Trigger: CAGCATCCTTTTTGTTGTCCACCTCTGCAAGCTCCT...ACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTTGAATCATGTGATAATTGGCTCTCAAAACAATTTGAAGAAAGGCTGGTaGTGTGAAGATGACGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VCVCVCVLNHVIIGSQNNLKKGW*CEDDGP Trigger: AGGCCCGTCATCTTCACAGCACCAGCCTTTCTTCAA...ATTGTTTTGAGAGCCAATTATCACATGATTCAACACACACACACACACACACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR GCA 90 bp | ATGATTGTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTTTGAAGAAAGGCTGGTaGTGTGAAGATGACGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: MIVQMTVWFSEYTSGSMSLKKGW*CEDDGP Trigger: AGGCCCGTCATCTTCACAGCACCAGCCTTTCTTCAA...ACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCACAATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | GATCAATTGAGAACCCTGTCACAGATTTCCTTTGAAACCTATTTAGAGATTGAATTGGGCTTGTTCTCATaGAGGAGCTTGCAGAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: DQLRTLSQISFETYLEIELGLFS*RSLQRW Trigger: CCACCTCTGCAAGCTCCTTCATGAGAACAAGCCCAA...TTCAATCTCTAAATAGGTTTCAAAGGAAATCTGTGACAGGGTTCTCAATTGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | AAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGAAGGCACCTGAGATGTaGTGGGGAGATTTATGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: KFSHFSIPHSSAWQERDLKAPEM*WGDLCL Trigger: TAAACATAAATCTCCCCATCACATCTCAGGTGCCTT...CAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | GATCAATTGAGAACCCTGTCACAGATTTCCTTTGAAACCTATTTAGAGATTGAACTCTGGGGATGCTTTTaGAGAAAGGCTGGTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: DQLRTLSQISFETYLEIELWGCF*RKAGAV Trigger: CACAGCACCAGCCTTTCTTCAAAAGCATCCCCAGAG...TTCAATCTCTAAATAGGTTTCAAAGGAAATCTGTGACAGGGTTCTCAATTGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTTGAATCATGTGATAATTGGCTCTCAAAACAAAGGAGCTTGCAGAGGTaGACAACAAAAAGGATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: CVCVCVCVESCDNWLSKQRSLQR*TTKRML Trigger: CAGCATCCTTTTTGTTGTCCACCTCTGCAAGCTCCT...TTGTTTTGAGAGCCAATTATCACATGATTCAACACACACACACACACACACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | TACACTCAATTAGACACACACACACACACACACACACACACACATACACACACAGAAAGGCTTCCCTCATaGTCATCATTGTGGAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: YTQLDTHTHTHTHTHTHTERLPS*SSLWKV Trigger: TACTTTCCACAATGATGACCATGAGGGAAGCCTTTC...TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAATTGAGTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | CACTATGCCATGATCCATAGCTCTGATGACAACATCTTGGATTATATTCAGGGAAAGGCACCTGAGATGTaGTGGGGAGATTTATGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: HYAMIHSSDDNILDYIQGKAPEM*WGDLCL Trigger: TAAACATAAATCTCCCCATCACATCTCAGGTGCCTT...TCCCTGAATATAATCCAAGATGTTGTCATCAGAGCTATGGATCATGGCATAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | TTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGATCCCATAAGCAGCATTAGTTaGGTTATGGAAAAGAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FTFLHSSFLSMARTRSDPISSIS*VMEKKA Trigger: TGCTTTCTTTTCCATAACCCAACTAATGCTGCTTAT...GGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | CACTATGCCATGATCCATAGCTCTGATGACAACATCTTGGATTATATTCAGGGAGAAAGGCTTCCCTCATaGTCATCATTGTGGAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: HYAMIHSSDDNILDYIQGERLPS*SSLWKV Trigger: TACTTTCCACAATGATGACCATGAGGGAAGCCTTTC...TCCCTGAATATAATCCAAGATGTTGTCATCAGAGCTATGGATCATGGCATAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR TCA 90 bp | CTGAGGCAACCGAATTATTGGAAATGTCATAGATATCACATAGTTATATCATGGAAGGATGCTGTTAGCTaGGATCCCAACACTCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: LRQPNYWKCHRYHIVISWKDAVS*DPNTHF Trigger: GAAGTGAGTGTTGGGATCTCAGCTAACAGCATCCTT...CCATGATATAACTATGTGATATCTATGACATTTCCAATAATTCGGTTGCCTCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | AATAGCAAGAAGCTGGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACAAGAGATCAATGGGTTTaGGCTTGTTCTCATGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NSKKLERIQISLNRRMDTRDQWV*ACSHEG Trigger: TCCTTCATGAGAACAAGCCCAAACCCATTGATCTCT...TGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| 3UTR CAA 72 bp | CACTATGCCATGATCCATAGCTCTGATGACAACATCTaGGATTATATTCAGGGACTATACCCATCACTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HYAMIHSSDDNI*DYIQGLYPSLK Trigger: TTTCAGTGATGGGTATAGTCCCTGAATATAATCCAAGATGTTGTCATCAGAGCTATGGATCATGGCATAGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR GCA 90 bp | AATAGCAAGAAGCTGGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACACTTGAACTTCAGCCTTaGTTGGAAAATAACTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: NSKKLERIQISLNRRMDTLELQP*LENNCV Trigger: GACACAGTTATTTTCCAAGCAAGGCTGAAGTTCAAG...TGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | ATACCTACCATTCACTATTTTAAATCTGGCTATCTGTGCATGATTGTGCAAATGAGAGATCAATGGGTTTaGGCTTGTTCTCATGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IPTIHYFKSGYLCMIVQMRDQWV*ACSHEG Trigger: TCCTTCATGAGAACAAGCCCAAACCCATTGATCTCT...CATTTGCACAATCATGCACAGATAGCCAGATTTAAAATAGTGAATGGTAGGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR GCA 90 bp | GATCAATTGAGAACCCTGTCACAGATTTCCTTTGAAACCTATTTAGAGATTGAACTTGAACTTCAGCCTTaGTTGGAAAATAACTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: DQLRTLSQISFETYLEIELELQP*LENNCV Trigger: GACACAGTTATTTTCCAAGCAAGGCTGAAGTTCAAG...TTCAATCTCTAAATAGGTTTCAAAGGAAATCTGTGACAGGGTTCTCAATTGATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | AATAGCAAGAAGCTGGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACAATAAGCAGCATTAGTTaGGTTATGGAAAAGAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NSKKLERIQISLNRRMDTISSIS*VMEKKA Trigger: TGCTTTCTTTTCCATAACCCAACTAATGCTGCTTAT...TGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | CTGAGGCAACCGAATTATTGGAAATGTCATAGATATCACATAGTTATATCATGGAACTTCAGCCTTGCTTaGAAAATAACTGTGTCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LRQPNYWKCHRYHIVISWNFSLA*KITVSK Trigger: TTTGGACACAGTTATTTTCCAAGCAAGGCTGAAGTT...CCATGATATAACTATGTGATATCTATGACATTTCCAATAATTCGGTTGCCTCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | ATACCTACCATTCACTATTTTAAATCTGGCTATCTGTGCATGATTGTGCAAATGAACTTCAGCCTTGCTTaGAAAATAACTGTGTCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: IPTIHYFKSGYLCMIVQMNFSLA*KITVSK Trigger: TTTGGACACAGTTATTTTCCAAGCAAGGCTGAAGTT...CATTTGCACAATCATGCACAGATAGCCAGATTTAAAATAGTGAATGGTAGGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CCA 90 bp | GATCAATTGAGAACCCTGTCACAGATTTCCTTTGAAACCTATTTAGAGATTGAAGCATTAGTTGGGTTATaGAAAAGAAAGCAATGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: DQLRTLSQISFETYLEIEALVGL*KRKQCR Trigger: TCTACATTGCTTTCTTTTCCATAACCCAACTAATGC...TTCAATCTCTAAATAGGTTTCAAAGGAAATCTGTGACAGGGTTCTCAATTGATC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CAA 90 bp | TTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGATCCCCCCTCATGGTCATCATaGTGGAAAGTATGCTTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: FTFLHSSFLSMARTRSDPPSWSS*WKVCLF Trigger: GAACAAGCATACTTTCCACAATGATGACCATGAGGG...GGGATCAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS CCA 90 bp | GCAGCATTAGTTGGGTTATGGAAAAGAAAGCAATGTAGAGATCAATaGGTTTGGGCTTGTTCTCATGAAGGAGCTTGCAGAGGTGGACAA | + |
|
Preference number: 5 (lower is better) Translates to: AALVGLWKRKQCRDQ*VWACSHEGACRGGQ Trigger: TTGTCCACCTCTGCAAGCTCCTTCATGAGAACAAGCCCAAACCCATTGATCTCTACATTGCTTTCTTTTCCATAACCCAACTAATGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081706.2 ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CAA 90 bp | AAGTTTTCACATTTCTCCATTCCTCATTCCTCAGCATGGCAAGAACGAGATCTGGAACTTCAGCCTTGCTaGGAAAATAACTGTGTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: KFSHFSIPHSSAWQERDLELQPC*ENNCVQ Trigger: TTGGACACAGTTATTTTCCAAGCAAGGCTGAAGTTC...CAGATCTCGTTCTTGCCATGCTGAGGAATGAGGAATGGAGAAATGTGAAAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CAA 90 bp | GTGCAAATGACAGTATGGTTCTCTGAATATACATCTGGCTCCATGAGTGTGTGTGAACTTCAGCCTTGCTaGGAAAATAACTGTGTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: VQMTVWFSEYTSGSMSVCELQPC*ENNCVQ Trigger: TTGGACACAGTTATTTTCCAAGCAAGGCTGAAGTTC...ACACACACTCATGGAGCCAGATGTATATTCAGAGAACCATACTGTCATTTGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS-3UTR CAA 90 bp | AATAGCAAGAAGCTGGAAAGAATCCAGATATCCCTCAACAGAAGAATGGATACACCCTCATGGTCATCATaGTGGAAAGTATGCTTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: NSKKLERIQISLNRRMDTPSWSS*WKVCLF Trigger: GAACAAGCATACTTTCCACAATGATGACCATGAGGG...TGTATCCATTCTTCTGTTGAGGGATATCTGGATTCTTTCCAGCTTCTTGCTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS GCA 72 bp | CCCTTTGCTCTGGGGATGCTTTTGAAGAAAGGCTGGTaGTGTGAAGATGACGGGCCTGCTTCTTGTGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: PFALGMLLKKGW*CEDDGPASCAS Trigger: GGAGGCACAAGAAGCAGGCCCGTCATCTTCACAGCACCAGCCTTTCTTCAAAAGCATCCCCAGAGCAAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081706.2 ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS CCA 72 bp | GTTGGGTTATGGAAAAGAAAGCAATGTAGAGATCAATaGGTTTGGGCTTGTTCTCATGAAGGAGCTTGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: VGLWKRKQCRDQ*VWACSHEGACR Trigger: TCTGCAAGCTCCTTCATGAGAACAAGCCCAAACCCATTGATCTCTACATTGCTTTCTTTTCCATAACCCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081706.2 ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS TCA 72 bp | AGACATATAGAGAACACAGAAGAAAAGAAAGGCACCTaGGATGTGATGGGGAGATTTATGTTTAAACTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: RHIENTEEKKGT*DVMGRFMFKLC Trigger: ACAAAGTTTAAACATAAATCTCCCCATCACATCTCAGGTGCCTTTCTTTTCTTCTGTGTTCTCTATATGTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081706.2 ENSMUST00000089417.8 ENSMUST00000226577.2 |
||
| CDS CAA 72 bp | ATAATAATTTTGACACAGAAGAATGTTGAGACATCCTaGAACTTCAGCCTTGCTTGGAAAATAACTGTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: IIILTQKNVETS*NFSLAWKITVS Trigger: GGACACAGTTATTTTCCAAGCAAGGCTGAAGTTCAAGGATGTCTCAACATTCTTCTGTGTCAAAATTATTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081706.2 ENSMUST00000089417.8 ENSMUST00000226577.2 |
||