Pregenerated sensors for VMN1R5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090346Ensembl transcript IDs: ENSMUST00000164307.2, ENSMUST00000226130.2, ENSMUST00000228276.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGAAGTACGATGTTGCAATGATAGAGTATGATGGTAAACACTTGTaGTCACAGAGCTGGAGAGATAGAGATAGGAGAAACACTGAAACT | + |
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Preference number: 1 (lower is better) Translates to: KKYDVAMIEYDGKHL*SQSWRDRDRRNTET Trigger: AGTTTCAGTGTTTCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTCTATCATTGCAACATCGTACTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTATGATGGTAAACACTTGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGAGGAAGCAGGAGTGGGTaGGTTGGGGAGCAGAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: EYDGKHLWSQSWRDRDRRGSRSG*VGEQRA Trigger: TGCCCTCTGCTCCCCAACCCACCCACTCCTGCTTCC...TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | ACCTATTCCATCTTGAAACCAACCTCCATAAAATCTTGTCCTGCTAAGGGTATGGGAAGCAGGAGTGGGTaGGTTGGGGAGCAGAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: TYSILKPTSIKSCPAKGMGSRSG*VGEQRA Trigger: TGCCCTCTGCTCCCCAACCCACCCACTCCTGCTTCC...CATACCCTTAGCAGGACAAGATTTTATGGAGGTTGGTTTCAAGATGGAATAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR GCA 90 bp | ACAACAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGGTGGGCACAGGGGAATaGACACAGGCATGCACTCTA | + |
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Preference number: 2 (lower is better) Translates to: TTANINSCSQCVHIHIPQVGTGE*TQACTL Trigger: TAGAGTGCATGCCTGTGTGCATTCCCCTGTGCCCAC...CTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTGTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACGGAAGGATGCTGAGCTaGCAAACCTATTCCATCTTG | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNGRMLS*QTYSIL Trigger: CAAGATGGAATAGGTTTGTCAGCTCAGCATCCTTCC...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACATAGTTATGAATGGATaGGGGTGGGGGATGAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNIVMNG*GWGMRQ Trigger: TTGCCTCATCCCCCACCCCCATCCATTCATAACTAT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACCACATCCCTCAGCTGTaGACAAGCACATACATACAT | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNHIPQL*TSTYIH Trigger: ATGTATGTATGTGCTTGTTCACAGCTGAGGGATGTG...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAATGTGTACATATACACATCCCTCAGCTGTGAACAAGCACATACATACATGATCTTCTCACCTCTGTaGGCACAGGGGAATGCACAC | + |
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Preference number: 2 (lower is better) Translates to: LNVYIYTSLSCEQAHTYMIFSPL*AQGNAH Trigger: GTGTGCATTCCCCTGTGCCCACAGAGGTGAGAAGAT...CATGTATGTATGTGCTTGTTCACAGCTGAGGGATGTGTATATGTACACATTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACTTGTGGTCACAGAGCTaGAGAGATAGAGATAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNLWSQS*RDRDRR Trigger: TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAA...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACTATCAAGACACCAGATaGATGGCAGACGAAGAACAA | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNYQDTR*MADEEQ Trigger: TTGTTCTTCGTCTGCCATTCATCTGGTGTCTTGATA...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CAA 90 bp | CAGAGCTGGAGAGATAGAGATAGGAGAAACACTGAAACTATTATCTaGATACAGGTCACAGAGAGAGATGCCCTATCAAGACACCAGATG | + |
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Preference number: 2 (lower is better) Translates to: QSWRDRDRRNTETII*IQVTERDALSRHQM Trigger: CATCTGGTGTCTTGATAGGGCATCTCTCTCTGTGACCTGTATCAAGATAATAGTTTCAGTGTTTCTCCTATCTCTATCTCTCCAGCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR GCA 90 bp | ACCTATTCCATCTTGAAACCAACCTCCATAAAATCTTGTCCTGCTAAGGGTATGGGTCACAGAGAGAGATaGCCTATCAAGACACCAGAT | + |
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Preference number: 2 (lower is better) Translates to: TYSILKPTSIKSCPAKGMGHRER*PIKTPD Trigger: ATCTGGTGTCTTGATAGGGCATCTCTCTCTGTGACC...CATACCCTTAGCAGGACAAGATTTTATGGAGGTTGGTTTCAAGATGGAATAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACAGAAAACACATGGTGTaGCTCATGAGTTTAACTACA | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNRKHMV*LMSLTT Trigger: TGTAGTTAAACTCATGAGTCACACCATGTGTTTTCT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACATGTCCATCAACAGATaGATGAGCAAAGAAGATATG | + |
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Preference number: 2 (lower is better) Translates to: CSVLVEFSTRSLEQASLNMSINR*MSKEDM Trigger: CATATCTTCTTTGCTCATTCATCTGTTGATGGACAT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | CTCAATGTGTACATATACACATCCCTCAGCTGTGAACAAGCACATACATACATGCTAGTTGGTCATAAATaGAAGGAGAAGACCTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: LNVYIYTSLSCEQAHTYMLVGHK*KEKTLV Trigger: AACCAAGGTCTTCTCCTTTCATTTATGACCAACTAG...CATGTATGTATGTGCTTGTTCACAGCTGAGGGATGTGTATATGTACACATTGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | ACAACAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGAGAAAACACATGGTGTaGCTCATGAGTTTAACTACA | + |
|
Preference number: 2 (lower is better) Translates to: TTANINSCSQCVHIHIPQRKHMV*LMSLTT Trigger: TGTAGTTAAACTCATGAGTCACACCATGTGTTTTCT...CTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTGTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | ACAACAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGTTTTATGGATCCACATaGATTATGATTAGGGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: TTANINSCSQCVHIHIPQFYGST*IMIRGQ Trigger: TTGCCCCCTAATCATAATTCATGTGGATCCATAAAA...CTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTGTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR TCA 90 bp | ACCTATTCCATCTTGAAACCAACCTCCATAAAATCTTGTCCTGCTAAGGGTATGTTTTATGGATCCACATaGATTATGATTAGGGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: TYSILKPTSIKSCPAKGMFYGST*IMIRGQ Trigger: TTGCCCCCTAATCATAATTCATGTGGATCCATAAAA...CATACCCTTAGCAGGACAAGATTTTATGGAGGTTGGTTTCAAGATGGAATAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAATGTGTACATATACACATCCCTCAGCTGTGAACAAGCACATACATACATGGAAAGGAGAAGACCTTaGTTCTGTGAAAATTCTATG | + |
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Preference number: 2 (lower is better) Translates to: LNVYIYTSLSCEQAHTYMERRRP*FCENSM Trigger: CATAGAATTTTCACAGAACCAAGGTCTTCTCCTTTC...CATGTATGTATGTGCTTGTTCACAGCTGAGGGATGTGTATATGTACACATTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CCA 72 bp | ACTGATAGTCACAAAATTATGGAGTTGGGGGCTCTGTaGTTTCAGGCACCTATCTCTGGGAACACGGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: TDSHKIMELGAL*FQAPISGNTAH Trigger: GTGAGCCGTGTTCCCAGAGATAGGTGCCTGAAACCACAGAGCCCCCAACTCCATAATTTTGTGACTATCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR GCA 72 bp | ATGAAAGGAGAAGACCTTGGTTCTGTGAAAATTCTATaGCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: MKGEDLGSVKIL*PSIGECQGQEA Trigger: TGCTTCCTGGCCCTGGCATTCCCCTATACTGGGGCATAGAATTTTCACAGAACCAAGGTCTTCTCCTTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACTATGATGGTAAACACTaGTGGTCACAGAGCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: CSVLVEFSTRSLEQASLNYDGKH*WSQSWR Trigger: TCTCCAGCTCTGTGACCACAAGTGTTTACCATCATA...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR GCA 72 bp | AATGGCAGACGAAGAACAACAGCCAACATTAACTCCTaGTCTCAATGTGTACATATACACATCCCTCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: NGRRRTTANINS*SQCVHIHIPQL Trigger: CAGCTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTGTTGTTCTTCGTCTGCCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACACTGAAACTATTATCTaGATACAGGTCACAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: CSVLVEFSTRSLEQASLNTETII*IQVTER Trigger: TCTCTCTGTGACCTGTATCAAGATAATAGTTTCAGT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CAA 90 bp | GAGTATGATGGTAAACACTTGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGAACTGAAACTATTATCTaGATACAGGTCACAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: EYDGKHLWSQSWRDRDRRTETII*IQVTER Trigger: TCTCTCTGTGACCTGTATCAAGATAATAGTTTCAGT...TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR-3UTR CAA 90 bp | ACCTATTCCATCTTGAAACCAACCTCCATAAAATCTTGTCCTGCTAAGGGTATGAGGACTCTCTACTGTTaGACAACAGAAATGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: TYSILKPTSIKSCPAKGMRTLYC*TTEMSR Trigger: TCTTGACATTTCTGTTGTCAAACAGTAGAGAGTCCT...CATACCCTTAGCAGGACAAGATTTTATGGAGGTTGGTTTCAAGATGGAATAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR TCA 72 bp | GAGATAGAGATAGGAGAAACACTGAAACTATTATCTTaGTACAGGTCACAGAGAGAGATGCCCTATCAAGAC | + |
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Preference number: 3 (lower is better) Translates to: EIEIGETLKLLS*YRSQREMPYQD Trigger: GTCTTGATAGGGCATCTCTCTCTGTGACCTGTATCAAGATAATAGTTTCAGTGTTTCTCCTATCTCTATCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CCA 72 bp | ATAGAGTATGATGGTAAACACTTGTGGTCACAGAGCTaGAGAGATAGAGATAGGAGAAACACTGAAACTATT | + |
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Preference number: 3 (lower is better) Translates to: IEYDGKHLWSQS*RDRDRRNTETI Trigger: AATAGTTTCAGTGTTTCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTCTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CCA 72 bp | GACCTTAGTATAATTACATCAAAACTGGATCTGTGGTaGTCTTTTGGCATTCACAAATACTTCCAGGCACAA | + |
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Preference number: 3 (lower is better) Translates to: DLSIITSKLDLW*SFGIHKYFQAQ Trigger: TTGTGCCTGGAAGTATTTGTGAATGCCAAAAGACCACCACAGATCCAGTTTTGATGTAATTATACTAAGGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CCA 72 bp | AGTGACCTTAGTATAATTACATCAAAACTGGATCTGTaGTGGTCTTTTGGCATTCACAAATACTTCCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: SDLSIITSKLDL*WSFGIHKYFQA Trigger: TGCCTGGAAGTATTTGTGAATGCCAAAAGACCACCACAGATCCAGTTTTGATGTAATTATACTAAGGTCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CCA 72 bp | TATAATTACATCAAAACTGGATCTGTGGTGGTCTTTTaGCATTCACAAATACTTCCAGGCACAACATTGCAT | + |
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Preference number: 3 (lower is better) Translates to: YNYIKTGSVVVF*HSQILPGTTLH Trigger: ATGCAATGTTGTGCCTGGAAGTATTTGTGAATGCCAAAAGACCACCACAGATCCAGTTTTGATGTAATTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CCA 90 bp | ATGCCATCTTCTCACCTCTGTGGGCACAGGGGAATGCACACAGGCATGCACTCTCATATTGTGACAGCTTaGAACACACTCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: MPSSHLCGHRGMHTGMHSHIVTA*NTLRRQ Trigger: CTGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATG...AGAGTGCATGCCTGTGTGCATTCCCCTGTGCCCACAGAGGTGAGAAGATGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | GAGTATGATGGTAAACACTTGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGAATGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: EYDGKHLWSQSWRDRDRRMWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACAT...TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CCA 90 bp | GAGTATGATGGTAAACACTTGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGACATATTGTGACAGCTTaGAACACACTCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EYDGKHLWSQSWRDRDRRHIVTA*NTLRRQ Trigger: CTGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATG...TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGATGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RGMHTGMHSSITLVHINKMWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACAT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CCA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGCATATTGTGACAGCTTaGAACACACTCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RGMHTGMHSSITLVHINKHIVTA*NTLRRQ Trigger: CTGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATG...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACTGGTCTCACTCACATTaGTATAAGCACCAACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: CSVLVEFSTRSLEQASLNWSHSH*YKHQQR Trigger: TCTTTGTTGGTGCTTATACCAATGTGAGTGAGACCA...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACAAGTTGCCTTACACTTaGTGTCATTCTCAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: CSVLVEFSTRSLEQASLNKLPYT*CHSQCS Trigger: TGAACATTGAGAATGACATCAAGTGTAAGGCAACTT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | CAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGCTGTAGTCTACCCAATACATaGCCACAAAGAAAAACACCA | + |
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Preference number: 4 (lower is better) Translates to: QPTLTPALNVYIYTSLSCSLPNT*PQRKTP Trigger: TGGTGTTTTTCTTTGTGGTCATGTATTGGGTAGACT...ACAGCTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| 3UTR CAA 72 bp | TACGATGTTGCAATGATAGAGTATGATGGTAAACACTaGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YDVAMIEYDGKH*WSQSWRDRDRR Trigger: TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTCTATCATTGCAACATCGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGAGTCTACCCAATACATaGCCACAAAGAAAAACACCA | + |
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Preference number: 4 (lower is better) Translates to: RGMHTGMHSSITLVHINKSLPNT*PQRKTP Trigger: TGGTGTTTTTCTTTGTGGTCATGTATTGGGTAGACT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CCA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGTGGTCTCACTCACATTaGTATAAGCACCAACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RGMHTGMHSSITLVHINKWSHSH*YKHQQR Trigger: TCTTTGTTGGTGCTTATACCAATGTGAGTGAGACCA...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGAAGTTGCCTTACACTTaGTGTCATTCTCAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: RGMHTGMHSSITLVHINKKLPYT*CHSQCS Trigger: TGAACATTGAGAATGACATCAAGTGTAAGGCAACTT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR TCA 90 bp | ACCTATTCCATCTTGAAACCAACCTCCATAAAATCTTGTCCTGCTAAGGGTATGAAGTTGCCTTACACTTaGTGTCATTCTCAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: TYSILKPTSIKSCPAKGMKLPYT*CHSQCS Trigger: TGAACATTGAGAATGACATCAAGTGTAAGGCAACTT...CATACCCTTAGCAGGACAAGATTTTATGGAGGTTGGTTTCAAGATGGAATAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | ATGCCATCTTCTCACCTCTGTGGGCACAGGGGAATGCACACAGGCATGCACTCTACATATTGTGACAGCTaGGAACACACTCAGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: MPSSHLCGHRGMHTGMHSTYCDS*EHTQEA Trigger: TGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATGT...AGAGTGCATGCCTGTGTGCATTCCCCTGTGCCCACAGAGGTGAGAAGATGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACCAAACAAGAAACAGATaGGCTAGGACTCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: CSVLVEFSTRSLEQASLNQTRNR*ARTPNP Trigger: TGGGTTTGGAGTCCTAGCCAATCTGTTTCTTGTTTG...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | CAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGCTGTATGAACGAAGGTCAGTaGACAGGAGATCAGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: QPTLTPALNVYIYTSLSCMNEGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGACCTTCGTTCAT...ACAGCTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | GAGTATGATGGTAAACACTTGTGGTCACAGAGCTGGAGAGATAGAGATAGGAGAACATATTGTGACAGCTaGGAACACACTCAGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: EYDGKHLWSQSWRDRDRRTYCDS*EHTQEA Trigger: TGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATGT...TCTCCTATCTCTATCTCTCCAGCTCTGTGACCACAAGTGTTTACCATCATACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGATGAACGAAGGTCAGTaGACAGGAGATCAGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKMNEGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGACCTTCGTTCAT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGACATATTGTGACAGCTaGGAACACACTCAGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKTYCDS*EHTQEA Trigger: TGCCTCCTGAGTGTGTTCCAAGCTGTCACAATATGT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACACATATGGTGGTGTTTaGACTGTAGGTTTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CSVLVEFSTRSLEQASLNTYGGV*TVGFSA Trigger: TGCTGAAAAACCTACAGTCAAAACACCACCATATGT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGCAAACAAGAAACAGATaGGCTAGGACTCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKQTRNR*ARTPNP Trigger: TGGGTTTGGAGTCCTAGCCAATCTGTTTCTTGTTTG...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | CTCAATGTGTACATATACACATCCCTCAGCTGTGAACAAGCACATACATACATGCAAACAAGAAACAGATaGGCTAGGACTCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: LNVYIYTSLSCEQAHTYMQTRNR*ARTPNP Trigger: TGGGTTTGGAGTCCTAGCCAATCTGTTTCTTGTTTG...CATGTATGTATGTGCTTGTTCACAGCTGAGGGATGTGTATATGTACACATTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACCTATTGAAGGACAAATaGAAGGACCACATACATAAG | + |
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Preference number: 5 (lower is better) Translates to: CSVLVEFSTRSLEQASLNLLKDK*KDHIHK Trigger: CTTATGTATGTGGTCCTTCAATTTGTCCTTCAATAG...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTGTCCTTGTAGAGTTTTCTACTAGGTCTCTGGAGCAAGCCTCACTCAACAAGATCTGGTTACTATaGAAGGACAAATTGAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: CSVLVEFSTRSLEQASLNKIWLL*KDKLKD Trigger: GTCCTTCAATTTGTCCTTCAATAGTAACCAGATCTT...GTTGAGTGAGGCTTGCTCCAGAGACCTAGTAGAAAACTCTACAAGGACAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | CAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGCTGTACATATGGTGGTGTTTaGACTGTAGGTTTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: QPTLTPALNVYIYTSLSCTYGGV*TVGFSA Trigger: TGCTGAAAAACCTACAGTCAAAACACCACCATATGT...ACAGCTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | CAGCCAACATTAACTCCTGCTCTCAATGTGTACATATACACATCCCTCAGCTGTCTATTGAAGGACAAATaGAAGGACCACATACATAAG | + |
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Preference number: 5 (lower is better) Translates to: QPTLTPALNVYIYTSLSCLLKDK*KDHIHK Trigger: CTTATGTATGTGGTCCTTCAATTTGTCCTTCAATAG...ACAGCTGAGGGATGTGTATATGTACACATTGAGAGCAGGAGTTAATGTTGGCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGACATATGGTGGTGTTTaGACTGTAGGTTTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKTYGGV*TVGFSA Trigger: TGCTGAAAAACCTACAGTCAAAACACCACCATATGT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGCTATTGAAGGACAAATaGAAGGACCACATACATAAG | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKLLKDK*KDHIHK Trigger: CTTATGTATGTGGTCCTTCAATTTGTCCTTCAATAG...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS-3UTR CAA 90 bp | AGGGGAATGCACACAGGCATGCACTCTAGCATAACACTTGTACATATAAATAAGAAGATCTGGTTACTATaGAAGGACAAATTGAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: RGMHTGMHSSITLVHINKKIWLL*KDKLKD Trigger: GTCCTTCAATTTGTCCTTCAATAGTAACCAGATCTT...CTTATTTATATGTACAAGTGTTATGCTAGAGTGCATGCCTGTGTGCATTCCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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| CDS CAA 72 bp | TCCAGTGAGAAACATGATTATATGAACGAAGGTCAGTaGACAGGAGATCAGGTCTGTGGGCTTACGTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSEKHDYMNEGQ*TGDQVCGLTSV Trigger: CACAGACGTAAGCCCACAGACCTGATCTCCTGTCAACTGACCTTCGTTCATATAATCATGTTTCTCACTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000164307.2 ENSMUST00000226130.2 ENSMUST00000228276.2 |
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