Pregenerated sensors for VMN1R48 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057592

Ensembl transcript IDs: ENSMUST00000073415.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AAAATGTCTGTGGCTATGACCGCTGCAACCAGTAGCATCAGTAGGTaGATTAGGGACAAGAGACCAATGGGCAGGTCAGTGAGTCTGGGC	+
Preference number: 5 (lower is better) Translates to: KMSVAMTAATSSISR*IRDKRPMGRSVSLG Trigger: GCCCAGACTCACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTGATGCTACTGGTTGCAGCGGTCATAGCCACAGACATTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073415.2
CDS TCA 90 bp	CAAATTGGGGGTGGCAGTGATGGATATAAGGAGGTGACTGCTAATTaGCATATAGAGGACACTCAGGAAAATAATGGCACAGGAGATGTT	+
Preference number: 5 (lower is better) Translates to: QIGGGSDGYKEVTAN*HIEDTQENNGTGDV Trigger: AACATCTCCTGTGCCATTATTTTCCTGAGTGTCCTCTATATGTCAATTAGCAGTCACCTCCTTATATCCATCACTGCCACCCCCAATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073415.2
CDS TCA 72 bp	TGCTCTGCGGATGCTTTGAGGGAAAGACTGGTACCCTaGAGATTCTGGGCCTGTTTCCTGTGCATGTACAAG	+
Preference number: 6 (lower is better) Translates to: CSADALRERLVP*RFWACFLCMYK Trigger: CTTGTACATGCACAGGAAACAGGCCCAGAATCTTCAGGGTACCAGTCTTTCCCTCAAAGCATCCGCAGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073415.2
CDS TCA 72 bp	GGTGGCAGTGATGGATATAAGGAGGTGACTGCTAATTaGCATATAGAGGACACTCAGGAAAATAATGGCACA	+
Preference number: 6 (lower is better) Translates to: GGSDGYKEVTAN*HIEDTQENNGT Trigger: TGTGCCATTATTTTCCTGAGTGTCCTCTATATGTCAATTAGCAGTCACCTCCTTATATCCATCACTGCCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073415.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu