Pregenerated sensors for VMN1R42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068232Ensembl transcript IDs: ENSMUST00000089419.3, ENSMUST00000226436.2, ENSMUST00000227279.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACCCTCAGGAGGCTGGCCAGTGTGGTATGCATACTTCATGTTTTTaGGGGCTCCATCCCACAGCACACTGTGCTGGAACTGCCTTGCAC | + |
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Preference number: 1 (lower is better) Translates to: NPQEAGQCGMHTSCF*GLHPTAHCAGTALH Trigger: GTGCAAGGCAGTTCCAGCACAGTGTGCTGTGGGATGGAGCCCTCAAAAACATGAAGTATGCATACCACACTGGCCAGCCTCCTGAGGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CCA 90 bp | TGTGCATGTGTGTTTATGTCTGTGAATATAGGCACCTATGCATCATaGCATGCATGTAGAGGCCGGATTTCCACCTATTACACTGGTCCT | + |
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Preference number: 1 (lower is better) Translates to: CACVFMSVNIGTYAS*HACRGRISTYYTGP Trigger: AGGACCAGTGTAATAGGTGGAAATCCGGCCTCTACATGCATGCCATGATGCATAGGTGCCTATATTCACAGACATAAACACACATGCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CCA 90 bp | TCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTaGGCATATGGACTTAGGTTTTTATTGTGCTGTGAATACTTTCCT | + |
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Preference number: 1 (lower is better) Translates to: SRSERCLLLFVTCGC*AYGLRFLLCCEYFP Trigger: AGGAAAGTATTCACAGCACAATAAAAACCTAAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 90 bp | ATCTCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATaGTGGGCATATGGACTTAGGTTTTTATTGTGCTGTGAATACTTT | + |
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Preference number: 1 (lower is better) Translates to: ISRSERCLLLFVTCG*WAYGLRFLLCCEYF Trigger: AAAGTATTCACAGCACAATAAAAACCTAAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 90 bp | AAGAAGTCTGCTTTCCTAGGAGAGTCTGAGAAAAAGAATCATATGTaGAAAGAGTGGAATTCAATCGGTGTGCAAGACATGTTTGTCACA | + |
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Preference number: 1 (lower is better) Translates to: KKSAFLGESEKKNHM*KEWNSIGVQDMFVT Trigger: TGTGACAAACATGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAGACTCTCCTAGGAAAGCAGACTTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CAA 90 bp | AGTCACAGGAAACTCTCTCCAGGAGACACAACACTGGAGCTGCCTTaGCAGCTCAGTGCCAGAAGTGACCATGGTGCTGACATGATCTCC | + |
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Preference number: 2 (lower is better) Translates to: SHRKLSPGDTTLELP*QLSARSDHGADMIS Trigger: GGAGATCATGTCAGCACCATGGTCACTTCTGGCACTGAGCTGCAAAGGCAGCTCCAGTGTTGTGTCTCCTGGAGAGAGTTTCCTGTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CCA 90 bp | TATGTGGCCAGGCTAAGTAACGCAGAGATTCTGGGAATTCACCACCCATTTGCCGAACCCTCAGGAGGCTaGCCAGTGTGGTATGCATAC | + |
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Preference number: 2 (lower is better) Translates to: YVARLSNAEILGIHHPFAEPSGG*PVWYAY Trigger: GTATGCATACCACACTGGCCAGCCTCCTGAGGGTTC...GGCAAATGGGTGGTGAATTCCCAGAATCTCTGCGTTACTTAGCCTGGCCACATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTGGGCATATGGACTTGAACCCTCAGGAGGCTaGCCAGTGTGGTATGCATAC | + |
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Preference number: 2 (lower is better) Translates to: SERCLLLFVTCGCWAYGLEPSGG*PVWYAY Trigger: GTATGCATACCACACTGGCCAGCCTCCTGAGGGTTC...AAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | TATGTGGCCAGGCTAAGTAACGCAGAGATTCTGGGAATTCACCACCCATTTGCCACACTGTGCTGGAACTaGCTTGCACATAAAGATGGA | + |
|
Preference number: 2 (lower is better) Translates to: YVARLSNAEILGIHHPFATLCWN*LAHKDG Trigger: TCCATCTTTATGTGCAAGGCAGTTCCAGCACAGTGT...GGCAAATGGGTGGTGAATTCCCAGAATCTCTGCGTTACTTAGCCTGGCCACATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | TACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGGAGTCCCACAGCACACTGTaGTGGAACTGCCTTGCACAT | + |
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Preference number: 2 (lower is better) Translates to: YQKLNKVQTGRGGKGFKESHSTL*WNCLAH Trigger: ATGTGCAAGGCAGTTCCAGCACAGTGTGCTGTGGGA...CTCCTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTGGGCATATGGACTTGAAATCAACCAATCCTaGGACAACCAAGATGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: SERCLLLFVTCGCWAYGLEINQS*DNQDEA Trigger: GGCTTCATCTTGGTTGTCTCAGGATTGGTTGATTTC...AAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTGGGCATATGGACTTACACTGTGCTGGAACTaGCTTGCACATAAAGATGGA | + |
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Preference number: 2 (lower is better) Translates to: SERCLLLFVTCGCWAYGLTLCWN*LAHKDG Trigger: TCCATCTTTATGTGCAAGGCAGTTCCAGCACAGTGT...AAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | TACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGGAGATAGACAGCATGCCATaGCTGACAGTTCTGATGGCA | + |
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Preference number: 2 (lower is better) Translates to: YQKLNKVQTGRGGKGFKEIDSMP*LTVLMA Trigger: TGCCATCAGAACTGTCAGTCATGGCATGCTGTCTAT...CTCCTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | TATGTGGCCAGGCTAAGTAACGCAGAGATTCTGGGAATTCACCACCCATTTGCCCTAGAGACAATGTTGTaGTATCTGTGTGAGGATAAT | + |
|
Preference number: 2 (lower is better) Translates to: YVARLSNAEILGIHHPFALETML*YLCEDN Trigger: ATTATCCTCACACAGATATCACAACATTGTCTCTAG...GGCAAATGGGTGGTGAATTCCCAGAATCTCTGCGTTACTTAGCCTGGCCACATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTGGGCATATGGACTTATAAGTGCTAGTGAGTaGATACACATCATATCTTCC | + |
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Preference number: 2 (lower is better) Translates to: SERCLLLFVTCGCWAYGLISASE*IHIISS Trigger: GGAAGATATGATGTGTATGCACTCACTAGCACTTAT...AAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAGAAAAAGAATCATATGTGCAAAGAGTGGAATTCAATCGGTGTGCAAGACACACAGCACACTGTGCTaGAACTGCCTTGCACATAAA | + |
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Preference number: 2 (lower is better) Translates to: LRKRIICAKSGIQSVCKTHSTLC*NCLAHK Trigger: TTTATGTGCAAGGCAGTTCCAGCACAGTGTGCTGTG...TGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | TTTGTTTCTGTTGTGTCTCTTGTTATTCTCTACTATGTGGCCAGGCTAAGTAACGAAATCAACCAATCCTaGGACAACCAAGATGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: FVSVVSLVILYYVARLSNEINQS*DNQDEA Trigger: GGCTTCATCTTGGTTGTCTCAGGATTGGTTGATTTC...GTTACTTAGCCTGGCCACATAGTAGAGAATAACAAGAGACACAACAGAAACAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | CCATTTGCCCATAAGATCTCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACACTAGAGACAATGTTGTaGTATCTGTGTGAGGATAAT | + |
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Preference number: 2 (lower is better) Translates to: PFAHKISRSERCLLLFVTLETML*YLCEDN Trigger: ATTATCCTCACACAGATATCACAACATTGTCTCTAG...TGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGATCTTATGGGCAAATGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | CATTCAAAGACTGTGTTTTGGTCATATGTTCTGTCAATTCTAGACTGTTGTTTCATAGACAGCATGCCATaGCTGACAGTTCTGATGGCA | + |
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Preference number: 2 (lower is better) Translates to: HSKTVFWSYVLSILDCCFIDSMP*LTVLMA Trigger: TGCCATCAGAACTGTCAGTCATGGCATGCTGTCTAT...GAAACAACAGTCTAGAATTGACAGAACATATGACCAAAACACAGTCTTTGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | TTTTACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGCTGGCCAGTGTGGTATaGATACTTCATGTTTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: FYQKLNKVQTGRGGKGFKLASVV*ILHVFE Trigger: CTCAAAAACATGAAGTATGCATACCACACTGGCCAG...CTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAGAAAAAGAATCATATGTGCAAAGAGTGGAATTCAATCGGTGTGCAAGACAGCTTCCCCAAGCATCTaGTTTTACCAGAAACTAAAT | + |
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Preference number: 2 (lower is better) Translates to: LRKRIICAKSGIQSVCKTASPSI*FYQKLN Trigger: ATTTAGTTTCTGGTAAAATCAGATGCTTGGGGAAGC...TGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CCA 90 bp | TTTGTTTCTGTTGTGTCTCTTGTTATTCTCTACTATGTGGCCAGGCTAAGTAACTTCACAGCAAGTTCATaGTTTGTCTACATTCCACAG | + |
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Preference number: 2 (lower is better) Translates to: FVSVVSLVILYYVARLSNFTASS*FVYIPQ Trigger: CTGTGGAATGTAGACAAACCATGAACTTGCTGTGAA...GTTACTTAGCCTGGCCACATAGTAGAGAATAACAAGAGACACAACAGAAACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CAA 90 bp | ATACTAAATATTCATATGTCTGATCTGTTATGTACATTCATACATTaGCAGTCACAGGAAACTCTCTCCAGGAGACACAACACTGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: ILNIHMSDLLCTFIH*QSQETLSRRHNTGA Trigger: AGCTCCAGTGTTGTGTCTCCTGGAGAGAGTTTCCTGTGACTGCAAATGTATGAATGTACATAACAGATCAGACATATGAATATTTAGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR GCA 90 bp | TTTGTTTCTGTTGTGTCTCTTGTTATTCTCTACTATGTGGCCAGGCTAAGTAACCTTAGGTTTTTATTGTaGTGTGAATACTTTCCTCAC | + |
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Preference number: 2 (lower is better) Translates to: FVSVVSLVILYYVARLSNLRFLL*CEYFPH Trigger: GTGAGGAAAGTATTCACAGCACAATAAAAACCTAAG...GTTACTTAGCCTGGCCACATAGTAGAGAATAACAAGAGACACAACAGAAACAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 72 bp | ACAGGAAACTCTCTCCAGGAGACACAACACTGGAGCTaGCTTTGCAGCTCAGTGCCAGAAGTGACCATGGTG | + |
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Preference number: 3 (lower is better) Translates to: TGNSLQETQHWS*LCSSVPEVTMV Trigger: CACCATGGTCACTTCTGGCACTGAGCTGCAAAGGCAGCTCCAGTGTTGTGTCTCCTGGAGAGAGTTTCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR TCA 72 bp | GAGGCTGGCCAGTGTGGTATGCATACTTCATGTTTTTaGGGGCTCCATCCCACAGCACACTGTGCTGGAACT | + |
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Preference number: 3 (lower is better) Translates to: EAGQCGMHTSCF*GLHPTAHCAGT Trigger: AGTTCCAGCACAGTGTGCTGTGGGATGGAGCCCTCAAAAACATGAAGTATGCATACCACACTGGCCAGCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 72 bp | CACCCATTTGCCCATAAGATCTCTAGGAGTGAAAGATaGCTGCTACTCTTTGTGACATGTGGATGCTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: HPFAHKISRSER*LLLFVTCGCWA Trigger: TGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGATCTTATGGGCAAATGGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 72 bp | TTCATGTTTTTGAGGGCTCCATCCCACAGCACACTGTaGTGGAACTGCCTTGCACATAAAGATGGAATAATA | + |
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Preference number: 3 (lower is better) Translates to: FMFLRAPSHSTL*WNCLAHKDGII Trigger: TATTATTCCATCTTTATGTGCAAGGCAGTTCCAGCACAGTGTGCTGTGGGATGGAGCCCTCAAAAACATGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 72 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATaGTGGGCATATGGACTTAGGTTTTTATTGTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: SERCLLLFVTCG*WAYGLRFLLCC Trigger: ACAGCACAATAAAAACCTAAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CAA 90 bp | CCATTTGCCCATAAGATCTCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACAAACCTAAAAATGGCATaGCATTTTGTGTGTCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: PFAHKISRSERCLLLFVTNLKMA*HFVCPC Trigger: ACAGGGACACACAAAATGCAATGCCATTTTTAGGTT...TGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGATCTTATGGGCAAATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR TCA 72 bp | GATCTCCAGCAAGAAGTCTGCTTTCCTAGGAGAGTCTaGGAAAAAGAATCATATGTGCAAAGAGTGGAATTC | + |
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Preference number: 3 (lower is better) Translates to: DLQQEVCFPRRV*EKESYVQRVEF Trigger: GAATTCCACTCTTTGCACATATGATTCTTTTTCTCAGACTCTCCTAGGAAAGCAGACTTCTTGCTGGAGATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CCA 72 bp | GGAGAGTCTGAGAAAAAGAATCATATGTGCAAAGAGTaGAATTCAATCGGTGTGCAAGACATGTTTGTCACA | + |
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Preference number: 3 (lower is better) Translates to: GESEKKNHMCKE*NSIGVQDMFVT Trigger: TGTGACAAACATGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAGACTCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR GCA 72 bp | TTCATATGTCTGATCTGTTATGTACATTCATACATTTaGAGTCACAGGAAACTCTCTCCAGGAGACACAACA | + |
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Preference number: 3 (lower is better) Translates to: FICLICYVHSYI*SHRKLSPGDTT Trigger: TGTTGTGTCTCCTGGAGAGAGTTTCCTGTGACTGCAAATGTATGAATGTACATAACAGATCAGACATATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAGAAAAAGAATCATATGTGCAAAGAGTGGAATTCAATCGGTGTGCAAGACAGGACTTAGGTTTTTATaGTGCTGTGAATACTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: LRKRIICAKSGIQSVCKTGLRFL*CCEYFP Trigger: AGGAAAGTATTCACAGCACAATAAAAACCTAAGTCC...TGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR TCA 72 bp | CCTCACTGTAACTCAGGGGCACTAGAGACAATGTTGTaGTATCTGTGTGAGGATAATATGTCTTTATTATTA | + |
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Preference number: 3 (lower is better) Translates to: PHCNSGALETML*YLCEDNMSLLL Trigger: TAATAATAAAGACATATTATCCTCACACAGATATCACAACATTGTCTCTAGTGCCCCTGAGTTACAGTGAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GAGGTGTGGGGTAGAGTCTTGAACCCTCAGGAGGCTGGCCAGTGTGGTATGCATTGTGAGAACATTGACTaGGGAGAAGAGAACAGAATA | + |
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Preference number: 4 (lower is better) Translates to: EVWGRVLNPQEAGQCGMHCENID*GEENRI Trigger: TATTCTGTTCTCTTCTCCTCAGTCAATGTTCTCACA...ATGCATACCACACTGGCCAGCCTCCTGAGGGTTCAAGACTCTACCCCACACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGGCCTGTGCCCACGAATaGACTTTAGGATGTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMACAHE*TLGCGQ Trigger: TTGTCCACATCCTAAAGTTCATTCGTGGGCACAGGC...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGTACTCAACATGCTGGTaGTGCAAAGGGAGAAACCCC | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMYSTCW*CKGRNP Trigger: GGGGTTTCTCCCTTTGCACCACCAGCATGTTGAGTA...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGAATTGGGGGTGGCAATaGTGGATACCAAGAGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMNWGWQ*WIPRVD Trigger: GTCAACTCTTGGTATCCATCATTGCCACCCCCAATT...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGGACAGGTTGGTTCCATaGAGATGCTGTGTCTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMDRLVP*RCCVCF Trigger: GAAACAGACACAGCATCTTCATGGAACCAACCTGTC...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR GCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGGAAGAAGGAAGCTGTTaGCTGAGATCCCAATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMEEGSC*LRSQCQ Trigger: TTGGCATTGGGATCTCAGGCAACAGCTTCCTTCTTC...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGTTTTGGGGGACAGGTTaGTTCCATGAAGATGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMFWGTG*FHEDAV Trigger: CACAGCATCTTCATGGAACCAACCTGTCCCCCAAAA...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR GCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGTCTGTTTCCTGTGCATaGTTAAGAGGGCTACCATGT | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMSVSCA*LRGLPC Trigger: ACATGGTAGCCCTCTTAAGCATGCACAGGAAACAGA...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGGAGGAGATATATGCTTaGACTTTGCTAAACAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMEEIYA*TLLNRS Trigger: GCTCCTGTTTAGCAAAGTTCAAGCATATATCTCCTC...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | TACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGGAGTACTCAACATGCTGGTaGTGCAAAGGGAGAAACCCC | + |
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Preference number: 4 (lower is better) Translates to: YQKLNKVQTGRGGKGFKEYSTCW*CKGRNP Trigger: GGGGTTTCTCCCTTTGCACCACCAGCATGTTGAGTA...CTCCTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | CCATTTGCCCATAAGATCTCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACATTTTGGGGGACAGGTTaGTTCCATGAAGATGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: PFAHKISRSERCLLLFVTFWGTG*FHEDAV Trigger: CACAGCATCTTCATGGAACCAACCTGTCCCCCAAAA...TGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGATCTTATGGGCAAATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGTGTGAGAACATTGACTaGGGAGAAGAGAACAGAATA | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMCENID*GEENRI Trigger: TATTCTGTTCTCTTCTCCTCAGTCAATGTTCTCACA...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | AGTGAAAGATGCCTGCTACTCTTTGTGACATGTGGATGCTGGGCATATGGACTTGAGGAGATATATGCTTaGACTTTGCTAAACAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SERCLLLFVTCGCWAYGLEEIYA*TLLNRS Trigger: GCTCCTGTTTAGCAAAGTTCAAGCATATATCTCCTC...AAGTCCATATGCCCAGCATCCACATGTCACAAAGAGTAGCAGGCATCTTTCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGGAAAAGAATGGCACCTaGTATGTGATGAGGAGATAT | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMEKNGT*YVMRRY Trigger: ATATCTCCTCATCACATATCAGGTGCCATTCTTTTC...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | GGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATGGCAGAACAATGATGAACTTTAGGATGTaGACAAGAAGAAGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GKAHRQHAMTDSSDGRTMMNFRM*TRRRKL Trigger: CAGCTTCCTTCTTCTTGTCCACATCCTAAAGTTCAT...CATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | TACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGGAGTTTTGGGGGACAGGTTaGTTCCATGAAGATGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: YQKLNKVQTGRGGKGFKEFWGTG*FHEDAV Trigger: CACAGCATCTTCATGGAACCAACCTGTCCCCCAAAA...CTCCTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | CTGAGAAAAAGAATCATATGTGCAAAGAGTGGAATTCAATCGGTGTGCAAGACAGCCTGTGCCCACGAATaGACTTTAGGATGTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: LRKRIICAKSGIQSVCKTACAHE*TLGCGQ Trigger: TTGTCCACATCCTAAAGTTCATTCGTGGGCACAGGC...TGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR GCA 90 bp | TACCAGAAACTAAATAAAGTGCAGACCGGAAGAGGAGGTAAAGGGTTTAAGGAGTCTGTTTCCTGTGCATaGTTAAGAGGGCTACCATGT | + |
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Preference number: 4 (lower is better) Translates to: YQKLNKVQTGRGGKGFKESVSCA*LRGLPC Trigger: ACATGGTAGCCCTCTTAAGCATGCACAGGAAACAGA...CTCCTTAAACCCTTTACCTCCTCTTCCGGTCTGCACTTTATTTAGTTTCTGGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| 3UTR CAA 72 bp | ACATGTGGATGCTGGGCATATGGACTTAGGTTTTTATaGTGCTGTGAATACTTTCCTCACTGTAACTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: TCGCWAYGLRFL*CCEYFPHCNSG Trigger: CCCTGAGTTACAGTGAGGAAAGTATTCACAGCACAATAAAAACCTAAGTCCATATGCCCAGCATCCACATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | CCATTTGCCCATAAGATCTCTAGGAGTGAAAGATGCCTGCTACTCTTTGTGACAGAAAAGAATGGCACCTaGTATGTGATGAGGAGATAT | + |
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Preference number: 4 (lower is better) Translates to: PFAHKISRSERCLLLFVTEKNGT*YVMRRY Trigger: ATATCTCCTCATCACATATCAGGTGCCATTCTTTTC...TGTCACAAAGAGTAGCAGGCATCTTTCACTCCTAGAGATCTTATGGGCAAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR GCA 90 bp | TTTGTTTCTGTTGTGTCTCTTGTTATTCTCTACTATGTGGCCAGGCTAAGTAACGAAGAAGGAAGCTGTTaGCTGAGATCCCAATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: FVSVVSLVILYYVARLSNEEGSC*LRSQCQ Trigger: TTGGCATTGGGATCTCAGGCAACAGCTTCCTTCTTC...GTTACTTAGCCTGGCCACATAGTAGAGAATAACAAGAGACACAACAGAAACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | CATTCAAAGACTGTGTTTTGGTCATATGTTCTGTCAATTCTAGACTGTTGTTTCAATTGGGGGTGGCAATaGTGGATACCAAGAGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: HSKTVFWSYVLSILDCCFNWGWQ*WIPRVD Trigger: GTCAACTCTTGGTATCCATCATTGCCACCCCCAATT...GAAACAACAGTCTAGAATTGACAGAACATATGACCAAAACACAGTCTTTGAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | CATTCAAAGACTGTGTTTTGGTCATATGTTCTGTCAATTCTAGACTGTTGTTTCGACAGGTTGGTTCCATaGAGATGCTGTGTCTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: HSKTVFWSYVLSILDCCFDRLVP*RCCVCF Trigger: GAAACAGACACAGCATCTTCATGGAACCAACCTGTC...GAAACAACAGTCTAGAATTGACAGAACATATGACCAAAACACAGTCTTTGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR GCA 90 bp | ACTTATTTTACAAACAGTGTGGGAAATATAAAACCTAGATGGGCAAGAACTACCGAAGAAGGAAGCTGTTaGCTGAGATCCCAATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TYFTNSVGNIKPRWARTTEEGSC*LRSQCQ Trigger: TTGGCATTGGGATCTCAGGCAACAGCTTCCTTCTTC...GGTAGTTCTTGCCCATCTAGGTTTTATATTTCCCACACTGTTTGTAAAATAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR TCA 90 bp | CTGAGAAAAAGAATCATATGTGCAAAGAGTGGAATTCAATCGGTGTGCAAGACATGTGAGAACATTGACTaGGGAGAAGAGAACAGAATA | + |
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Preference number: 4 (lower is better) Translates to: LRKRIICAKSGIQSVCKTCENID*GEENRI Trigger: TATTCTGTTCTCTTCTCCTCAGTCAATGTTCTCACA...TGTCTTGCACACCGATTGAATTCCACTCTTTGCACATATGATTCTTTTTCTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | TATTTAACATTTGGCAAAGCACATAGACAGCATGCCATGACTGACAGTTCTGATATGAACTTTAGGATGTaGACAAGAAGAAGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: YLTFGKAHRQHAMTDSSDMNFRM*TRRRKL Trigger: CAGCTTCCTTCTTCTTGTCCACATCCTAAAGTTCAT...ATCAGAACTGTCAGTCATGGCATGCTGTCTATGTGCTTTGCCAAATGTTAAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS-3UTR CCA 90 bp | CATTCAAAGACTGTGTTTTGGTCATATGTTCTGTCAATTCTAGACTGTTGTTTCATGAACTTTAGGATGTaGACAAGAAGAAGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: HSKTVFWSYVLSILDCCFMNFRM*TRRRKL Trigger: CAGCTTCCTTCTTCTTGTCCACATCCTAAAGTTCAT...GAAACAACAGTCTAGAATTGACAGAACATATGACCAAAACACAGTCTTTGAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS CCA 90 bp | AAAATGTCTGTGGCTATGAATGCTGCGACCAGTAGCATCAGTAGGTaGATTAGGGACAAGAGACCAATGGGCAGGTCAGTGAGTCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: KMSVAMNAATSSISR*IRDKRPMGRSVSLG Trigger: GCCCAGACTCACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTGATGCTACTGGTCGCAGCATTCATAGCCACAGACATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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| CDS CCA 72 bp | GTGGCTATGAATGCTGCGACCAGTAGCATCAGTAGGTaGATTAGGGACAAGAGACCAATGGGCAGGTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: VAMNAATSSISR*IRDKRPMGRSV Trigger: CACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTGATGCTACTGGTCGCAGCATTCATAGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089419.3 ENSMUST00000226436.2 ENSMUST00000227279.2 |
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