Pregenerated sensors for VMN1R41 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094586Ensembl transcript IDs: ENSMUST00000204949.3, ENSMUST00000226337.2, ENSMUST00000226562.2, ENSMUST00000227039.2, ENSMUST00000227630.2, ENSMUST00000228068.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAACACAAAAGGGCTCACTGTGGCATAGCTATGGGACACAATAATTTGGACACAACATTGAGCCATCCTTaGACTTCATCCTTGAGTGGA | + |
|
Preference number: 2 (lower is better) Translates to: QHKRAHCGIAMGHNNLDTTLSHP*TSSLSG Trigger: TCCACTCAAGGATGAAGTTCAAGGATGGCTCAATGT...TGTGTCCAAATTATTGTGTCCCATAGCTATGCCACAGTGAGCCCTTTTGTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| 3UTR-3UTR CCA 90 bp | CAACACAAAAGGGCTCACTGTGGCATAGCTATGGGACACAATAATTTGGACACACTGATGGCAACATACTaGAAAATATTCAGGGTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: QHKRAHCGIAMGHNNLDTLMATY*KIFRVH Trigger: ATGGACCCTGAATATTTTCCAGTATGTTGCCATCAG...TGTGTCCAAATTATTGTGTCCCATAGCTATGCCACAGTGAGCCCTTTTGTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| 3UTR-3UTR CCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGCTGATGGCAACATACTaGAAAATATTCAGGGTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPLMATY*KIFRVH Trigger: ATGGACCCTGAATATTTTCCAGTATGTTGCCATCAG...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYETLVL*RSQACF Trigger: GAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTC...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | TGGACACAGTACAACATTGAGCCATCCTTGAACTTCATCCTTGAGTGGAAGACAGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: WTQYNIEPSLNFILEWKTETLVL*RSQACF Trigger: GAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTC...TGTCTTCCACTCAAGGATGAAGTTCAAGGATGGCTCAATGTTGTACTGTGTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACAAGCATACTGTTAGCTaGGATCCCAACACTCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYKHTVS*DPNTHF Trigger: GAAGTGAGTGTTGGGATCTCAGCTAACAGTATGCTT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACGAATCCCATATCCCCTaGGACATAAACATGTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYESHIP*DINMSA Trigger: TGCAGACATGTTTATGTCTCAGGGGATATGGGATTC...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACATACATAAAATCCTCTaGGGTCAAGTTGGGGGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYIHKIL*GQVGGS Trigger: GCTACCCCCAACTTGACCTCAGAGGATTTTATGTAT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACACATTGAGCCATCCTTaGACTTCATCCTTGAGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYTLSHP*TSSLSG Trigger: TCCACTCAAGGATGAAGTTCAAGGATGGCTCAATGT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR GCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACTCGCTGTGGAAAACATaGTTGTCCTGGAGTAACTCA | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYSLWKT*LSWSNS Trigger: TGAGTTACTCCAGGACAAGCATGTTTTCCACAGCGA...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | ACAATAATTTGGACACAGTACAACATTGAGCCATCCTTGAACTTCATCCTTGAGGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TIIWTQYNIEPSLNFILEETLVL*RSQACF Trigger: GAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTC...CTCAAGGATGAAGTTCAAGGATGGCTCAATGTTGTACTGTGTCCAAATTATTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACCTTGAACTTCATCCTTaGGTGGAAGACAGCATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYLELHP*VEDSIF Trigger: GAAAATGCTGTCTTCCACTCAAGGATGAAGTTCAAG...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACAGAAGTGAGCAGGACTaGGTAACATACATAAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYRSEQD*VTYIKS Trigger: GGATTTTATGTATGTTACTCAGTCCTGCTCACTTCT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPETLVL*RSQACF Trigger: GAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTC...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR GCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACTCATACGCTTTTCAGTaGAAATCAACACAAAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYSYAFQ*KSTQKG Trigger: GCCCTTTTGTGTTGATTTGCACTGAAAAGCGTATGA...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACTATTCTGCCAAACATTaGCCCCCAAAACTTAATCAT | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYYSAKH*PPKLNH Trigger: ATGATTAAGTTTTGGGGGTCAATGTTTGGCAGAATA...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR CCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACAGGAGTATGCAGATGTaGACTATAAAAAGCATACTG | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYRSMQM*TIKSIL Trigger: CAGTATGCTTTTTATAGTCCACATCTGCATACTCCT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS-3UTR CCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACAAAACATGCTTGTCCTaGAGTAACTCATGGATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYKTCLS*SNSWIE Trigger: TTCTATCCATGAGTTACTCCAGGACAAGCATGTTTT...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR CCA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACTGGGACACAATAATTTaGACACAGTACAACATTGAG | + |
|
Preference number: 4 (lower is better) Translates to: AMTRSSDGNILENIQGPYWDTII*TQYNIE Trigger: CTCAATGTTGTACTGTGTCCAAATTATTGTGTCCCA...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGAAGCATACTGTTAGCTaGGATCCCAACACTCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPKHTVS*DPNTHF Trigger: GAAGTGAGTGTTGGGATCTCAGCTAACAGTATGCTT...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGGAATCCCATATCCCCTaGGACATAAACATGTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPESHIP*DINMSA Trigger: TGCAGACATGTTTATGTCTCAGGGGATATGGGATTC...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR GCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGTCGCTGTGGAAAACATaGTTGTCCTGGAGTAACTCA | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPSLWKT*LSWSNS Trigger: TGAGTTACTCCAGGACAAGCATGTTTTCCACAGCGA...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGCTTGAACTTCATCCTTaGGTGGAAGACAGCATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPLELHP*VEDSIF Trigger: GAAAATGCTGTCTTCCACTCAAGGATGAAGTTCAAG...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGAGAAGTGAGCAGGACTaGGTAACATACATAAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPRSEQD*VTYIKS Trigger: GGATTTTATGTATGTTACTCAGTCCTGCTCACTTCT...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR TCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGTATTCTGCCAAACATTaGCCCCCAAAACTTAATCAT | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPYSAKH*PPKLNH Trigger: ATGATTAAGTTTTGGGGGTCAATGTTTGGCAGAATA...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR CCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGAGGAGTATGCAGATGTaGACTATAAAAAGCATACTG | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPRSMQM*TIKSIL Trigger: CAGTATGCTTTTTATAGTCCACATCTGCATACTCCT...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS-3UTR CCA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGTGGGACACAATAATTTaGACACAGTACAACATTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPWDTII*TQYNIE Trigger: CTCAATGTTGTACTGTGTCCAAATTATTGTGTCCCA...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS TCA 90 bp | GTGGCCCTTTGTTCTGGGGATGATTTTGAAGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTCTTGTGCCTCCATAGGAGAGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: VALCSGDDFEETLVL*RSQACFLCLHRRAT Trigger: GGTGGCTCTCCTATGGAGGCACAAGAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTCTTCAAAATCATCCCCAGAACAAAGGGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS-3UTR CAA 90 bp | GCCATGACCCGTAGCTCTGATGGCAACATACTGGAAAATATTCAGGGTCCATACGTTCTGGGGATGATTTaGAAGAAACGTTGGTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: AMTRSSDGNILENIQGPYVLGMI*KKRWCC Trigger: ACAGCACCAACGTTTCTTCAAAATCATCCCCAGAAC...GTATGGACCCTGAATATTTTCCAGTATGTTGCCATCAGAGCTACGGGTCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS CCA 90 bp | AGGTTAATGGGCTTAGGCCTGTTCTCACCAAGGAGTATGCAGATGTaGACTATAAAAAGCATACTGTTAGCTGAGATCCCAACACTCACT | + |
|
Preference number: 5 (lower is better) Translates to: RLMGLGLFSPRSMQM*TIKSILLAEIPTLT Trigger: AGTGAGTGTTGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATACTCCTTGGTGAGAACAGGCCTAAGCCCATTAACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS-3UTR CAA 90 bp | CAACACAAAAGGGCTCACTGTGGCATAGCTATGGGACACAATAATTTGGACACAGTTCTGGGGATGATTTaGAAGAAACGTTGGTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: QHKRAHCGIAMGHNNLDTVLGMI*KKRWCC Trigger: ACAGCACCAACGTTTCTTCAAAATCATCCCCAGAAC...TGTGTCCAAATTATTGTGTCCCATAGCTATGCCACAGTGAGCCCTTTTGTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS-3UTR CAA 90 bp | ACAATAATTTGGACACAGTACAACATTGAGCCATCCTTGAACTTCATCCTTGAGGTTCTGGGGATGATTTaGAAGAAACGTTGGTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: TIIWTQYNIEPSLNFILEVLGMI*KKRWCC Trigger: ACAGCACCAACGTTTCTTCAAAATCATCCCCAGAAC...CTCAAGGATGAAGTTCAAGGATGGCTCAATGTTGTACTGTGTCCAAATTATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS-3UTR CAA 90 bp | AAATATTTCATATATCAATTTAAGCCACAGAATGTTCCCACATGCCATGACCCGGTTCTGGGGATGATTTaGAAGAAACGTTGGTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: KYFIYQFKPQNVPTCHDPVLGMI*KKRWCC Trigger: ACAGCACCAACGTTTCTTCAAAATCATCCCCAGAAC...CGGGTCATGGCATGTGGGAACATTCTGTGGCTTAAATTGATATATGAAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS TCA 90 bp | ACCAAGGAGTATGCAGATGTGGACTATAAAAAGCATACTGTTAGCTaGGATCCCAACACTCACTTCAGAGAACAAGAAAGTTTTCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: TKEYADVDYKKHTVS*DPNTHFREQESFHV Trigger: AACATGAAAACTTTCTTGTTCTCTGAAGTGAGTGTTGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATACTCCTTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS TCA 90 bp | CACAAGGAGTATGCAGATGTGGACTATAAAAAGCATACTGTTAGCTaGGATCCCAACACTCACTTCAGAGAACAAGAAAGTTTTCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: HKEYADVDYKKHTVS*DPNTHFREQESFHV Trigger: AACATGAAAACTTTCTTGTTCTCTGAAGTGAGTGTTGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATACTCCTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS TCA 72 bp | TGTTCTGGGGATGATTTTGAAGAAACGTTGGTGCTGTaGAGATCCCAGGCCTGCTTCTTGTGCCTCCATAGG | + |
|
Preference number: 6 (lower is better) Translates to: CSGDDFEETLVL*RSQACFLCLHR Trigger: CCTATGGAGGCACAAGAAGCAGGCCTGGGATCTTCACAGCACCAACGTTTCTTCAAAATCATCCCCAGAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000227039.2 ENSMUST00000227630.2 ENSMUST00000228068.2 |
||
| CDS CCA 72 bp | GGCTTAGGCCTGTTCTCACCAAGGAGTATGCAGATGTaGACTATAAAAAGCATACTGTTAGCTGAGATCCCA | + |
|
Preference number: 6 (lower is better) Translates to: GLGLFSPRSMQM*TIKSILLAEIP Trigger: TGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATACTCCTTGGTGAGAACAGGCCTAAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000204949.3 ENSMUST00000228068.2 |
||
| CDS CCA 72 bp | GAGAGCCACCATGTACCCACAAGGAGTATGCAGATGTaGACTATAAAAAGCATACTGTTAGCTGAGATCCCA | + |
|
Preference number: 6 (lower is better) Translates to: ESHHVPTRSMQM*TIKSILLAEIP Trigger: TGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATACTCCTTGTGGGTACATGGTGGCTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226337.2 ENSMUST00000226562.2 |
||
| CDS TCA 72 bp | TATGCAGATGTGGACTATAAAAAGCATACTGTTAGCTaGGATCCCAACACTCACTTCAGAGAACAAGAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: YADVDYKKHTVS*DPNTHFREQES Trigger: ACTTTCTTGTTCTCTGAAGTGAGTGTTGGGATCTCAGCTAACAGTATGCTTTTTATAGTCCACATCTGCATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS CAA 72 bp | CAACACTCACTTCAGAGAACAAGAAAGTTTTCATGTTaGTATCAGTGTAGAGTAGGTTGGCTTTATTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: QHSLQRTRKFSC*YQCRVGWLYSS Trigger: TGATGAATAAAGCCAACCTACTCTACACTGATACAAACATGAAAACTTTCTTGTTCTCTGAAGTGAGTGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000204949.3 ENSMUST00000226337.2 ENSMUST00000226562.2 ENSMUST00000228068.2 |
||
| CDS CAA 72 bp | CATGTACCCATTCAGAGAACAAGAAAGTTTTCATGTTaGTATCAGTGTAGAGTAGGTTGGCTTTATTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: HVPIQRTRKFSC*YQCRVGWLYSS Trigger: TGATGAATAAAGCCAACCTACTCTACACTGATACAAACATGAAAACTTTCTTGTTCTCTGAATGGGTACATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227039.2 ENSMUST00000227630.2 |
||