Pregenerated sensors for VMN1R4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071893Ensembl transcript IDs: ENSMUST00000096612.4, ENSMUST00000176838.2, ENSMUST00000227073.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTaGCACAATACTTACACATATAAATCTAGCTTTTTAAAGAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: LLTSVDTGNAHMNTL*HNTYTYKSSFLKKK Trigger: TTTCTTCTTTAAAAAGCTAGATTTATATGTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| 3UTR TCA 72 bp | ATCTTCTCACCTCTGTGGACACCGGAAATGCACACATaGATACACTCTGGCACAATACTTACACATATAAAT | + |
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Preference number: 3 (lower is better) Translates to: IFSPLWTPEMHT*IHSGTILTHIN Trigger: ATTTATATGTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGAAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| 3UTR CCA 72 bp | TCTGTGGACACCGGAAATGCACACATGAATACACTCTaGCACAATACTTACACATATAAATCTAGCTTTTTA | + |
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Preference number: 3 (lower is better) Translates to: SVDTGNAHMNTL*HNTYTYKSSFL Trigger: TAAAAAGCTAGATTTATATGTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACAGGCTCTCAGGTGGCTaGTGCTATGAAGATGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYRLSGG*CYEDAC Trigger: GCAAGCATCTTCATAGCATCAGCCACCTGAGAGCCT...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACAGGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYRWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACCT...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACAGGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHRWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACCT...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACTTCACCACAAACTTCTaGGCAGTCAGGAGAACTGGG | + |
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Preference number: 4 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHFTTNF*AVRRTG Trigger: CCCAGTTCTCCTGACTGCTCAGAAGTTTGTGGTGAA...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CCA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACAAAGAAGAAACATGTTaGCCAGGACTCCAAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYKEETC*PGLQAQ Trigger: CTGGGCTTGGAGTCCTGGCCAACATGTTTCTTCTTT...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACAGGAGCATCATTATGTaGACGAAGGTCAGTTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHRSIIM*TKVSWQ Trigger: CTGCCAACTGACCTTCGTTCACATAATGATGCTCCT...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACAAAATTTGCCAACAGTaGGGTATTGGGACTGATTGT | + |
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Preference number: 4 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYKICQQ*GIGTDC Trigger: ACAATCAGTCCCAATACCTCACTGTTGGCAAATTTT...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR TCA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACAAGTTGCCTTACATTTaGAGTCATTCTCAGTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHKLPYI*SHSQCS Trigger: TGAACACTGAGAATGACTTCAAATGTAAGGCAACTT...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACGTGAACGAAGGTCAGTaGGCAGGAAGTCAGGTCCGT | + |
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Preference number: 5 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYVNEGQ*AGSQVR Trigger: ACGGACCTGACTTCCTGCCAACTGACCTTCGTTCAC...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACGTGAACGAAGGTCAGTaGGCAGGAAGTCAGGTCCGT | + |
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Preference number: 5 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHVNEGQ*AGSQVR Trigger: ACGGACCTGACTTCCTGCCAACTGACCTTCGTTCAC...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACGCCAACAGTGAGGTATaGGGACTGATTGTGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHANSEV*GLIVTA Trigger: GGCTGTCACAATCAGTCCCAATACCTCACTGTTGGC...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACGACTCCAAGCCCAGCTaGGAAATAAAGGACATTTTT | + |
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Preference number: 5 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHDSKPS*EIKDIF Trigger: AAAAATGTCCTTTATTTCCAAGCTGGGCTTGGAGTC...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | TCTCACCTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACGTGACCATTATCTGTTaGTTCTCACTCACATTGGTA | + |
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Preference number: 5 (lower is better) Translates to: SHLCGHRKCTHEYTLAQYVTIIC*FSLTLV Trigger: TACCAATGTGAGTGAGAACAAACAGATAATGGTCAC...GTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAGGTGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACGTGACCATTATCTGTTaGTTCTCACTCACATTGGTA | + |
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Preference number: 5 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHVTIIC*FSLTLV Trigger: TACCAATGTGAGTGAGAACAAACAGATAATGGTCAC...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS-3UTR CAA 90 bp | CTCTGTGGACACCGGAAATGCACACATGAATACACTCTGGCACAATACTTACACAAAGTTGCCTTACATTaGAAGTCATTCTCAGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: LCGHRKCTHEYTLAQYLHKVALH*KSFSVF Trigger: GAACACTGAGAATGACTTCAAATGTAAGGCAACTTT...GTGTAAGTATTGTGCCAGAGTGTATTCATGTGTGCATTTCCGGTGTCCACAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS CAA 72 bp | TCCAGTAAGGAGCATCATTATGTGAACGAAGGTCAGTaGGCAGGAAGTCAGGTCCGTGGGCTTCGGTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSKEHHYVNEGQ*AGSQVRGLRSV Trigger: CACAGACCGAAGCCCACGGACCTGACTTCCTGCCAACTGACCTTCGTTCACATAATGATGCTCCTTACTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096612.4 ENSMUST00000176838.2 ENSMUST00000227073.2 |
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| CDS CAA 90 bp | AATATCCCCTCCAGTAAGGAGCATCATTATGTGAACGAAGGTCAGTaGGCAGGAAGTCAGGTCCGTGGGCTTCGGTCTGTGACCAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: NIPSSKEHHYVNEGQ*AGSQVRGLRSVTKD Trigger: ATCCTTGGTCACAGACCGAAGCCCACGGACCTGACTTCCTGCCAACTGACCTTCGTTCACATAATGATGCTCCTTACTGGAGGGGATATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096612.4 ENSMUST00000176838.2 ENSMUST00000227073.2 |
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