Pregenerated sensors for VMN1R38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115170Ensembl transcript IDs: ENSMUST00000226457.2, ENSMUST00000227493.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTCCCTTTTCGTaGGCACTCCATAGCCTCAGTAATAGTGTCAGGCCTTGGGATCTC | + |
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Preference number: 1 (lower is better) Translates to: ACWVFWRAVMIGPFS*ALHSLSNSVRPWDL Trigger: GAGATCCCAAGGCCTGACACTATTACTGAGGCTATGGAGTGCTCACGAAAAGGGACCTATCATGACTGCCCTCCAGAAGACCCAACAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CCA 90 bp | GCTGGTGTATGCTGTCTGTTTGGTGGTCCAGTGTTTGAGAGATCTTaGGGGTCCAGATTGAGACTGCTGGTTCTCCTACAGGATCACCCT | + |
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Preference number: 1 (lower is better) Translates to: AGVCCLFGGPVFERS*GSRLRLLVLLQDHP Trigger: AGGGTGATCCTGTAGGAGAACCAGCAGTCTCAATCTGGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 90 bp | TTCCCAGGAACCACATGGTGGCTCACAACCACCTGTTATGGGATCTaGCACTCCCTTCTGGAGAGTCTGAAGACAGTGAGAGTGTACTCA | + |
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Preference number: 1 (lower is better) Translates to: FPGTTWWLTTTCYGI*HSLLESLKTVRVYS Trigger: TGAGTACACTCTCACTGTCTTCAGACTCTCCAGAAGGGAGTGTCAGATCCCATAACAGGTGGTTGTGAGCCACCATGTGGTTCCTGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 90 bp | GTCTGTTTGGTGGTCCAGTGTTTGAGAGATCTTGGGGGTCCAGATTaGGACTGCTGGTTCTCCTACAGGATCACCCTTCTCCTCAGTTTC | + |
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Preference number: 1 (lower is better) Translates to: VCLVVQCLRDLGGPD*DCWFSYRITLLLSF Trigger: GAAACTGAGGAGAAGGGTGATCCTGTAGGAGAACCAGCAGTCTCAATCTGGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR GCA 90 bp | GTCCTCTACTGTATGTGTGTTGGTGGCCTCATATCAGCTGGTGTATaGTGTCTGTTTGGTGGTCCAGTGTTTGAGAGATCTTGGGGGTCC | + |
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Preference number: 1 (lower is better) Translates to: VLYCMCVGGLISAGV*CLFGGPVFERSWGS Trigger: GGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCACCAACACACATACAGTAGAGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAAAGCGGGACACAGGAGTaGGGGGAAAGGGTTAGCGGA | + |
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Preference number: 2 (lower is better) Translates to: LTHSHFLALAFPCTEADKSGTQE*GERVSG Trigger: TCCGCTAACCCTTTCCCCCCACTCCTGTGTCCCGCT...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAATGGCCCCTGATTCAGTaGCAGCCCTGGCTTTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: LTHSHFLALAFPCTEADKWPLIQ*QPWLSS Trigger: TGAGGAAAGCCAGGGCTGGCACTGAATCAGGGGCCA...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | TCAAATAAATATGGCCAGAGGGAGCAGGCCAGAGCAAGCGGGACACAGGAGTGGATCCAGGGGATCCCATaGCCTCATCTGACCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: SNKYGQREQARASGTQEWIQGIP*PHLTSV Trigger: CACAGAGGTCAGATGAGGTCATGGGATCCCCTGGAT...CCACTCCTGTGTCCCGCTTGCTCTGGCCTGCTCCCTCTGGCCATATTTATTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAAATTCAGTGCCAGCCCTaGCTTTCCTCAGTGATGGAG | + |
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Preference number: 2 (lower is better) Translates to: LTHSHFLALAFPCTEADKIQCQP*LSSVME Trigger: CTCCATCACTGAGGAAAGCCAGGGCTGGCACTGAAT...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | CCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTCTGTCTTCTGATATCCAGGGGATCCCATaGCCTCATCTGACCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: PPLLSAEAEGCFSCLSSDIQGIP*PHLTSV Trigger: CACAGAGGTCAGATGAGGTCATGGGATCCCCTGGAT...ATCAGAAGACAGACAAGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | CCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTCTGTCTTCTGATCCTGGCTTTCCTCAGTaGTGGAGTGTGACCTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: PPLLSAEAEGCFSCLSSDPGFPQ*WSVTWE Trigger: TTCCCAGGTCACACTCCATCACTGAGGAAAGCCAGG...ATCAGAAGACAGACAAGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CATGGTGGCTCACAACCACCTGTTATGGGATCTGACACTCCCTTCTGGAGAGTCATTCAGTGCCAGCCCTaGCTTTCCTCAGTGATGGAG | + |
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Preference number: 2 (lower is better) Translates to: HGGSQPPVMGSDTPFWRVIQCQP*LSSVME Trigger: CTCCATCACTGAGGAAAGCCAGGGCTGGCACTGAAT...GACTCTCCAGAAGGGAGTGTCAGATCCCATAACAGGTGGTTGTGAGCCACCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTCCTGGCTTTCCTCAGTaGTGGAGTGTGACCTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGPGFPQ*WSVTWE Trigger: TTCCCAGGTCACACTCCATCACTGAGGAAAGCCAGG...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | TCAAATAAATATGGCCAGAGGGAGCAGGCCAGAGCAAGCGGGACACAGGAGTGGCCAGGAATGCACACATaGAAACATGCCAGGCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: SNKYGQREQARASGTQEWPGMHT*KHARPK Trigger: TTTTGGCCTGGCATGTTTGCATGTGTGCATTCCTGG...CCACTCCTGTGTCCCGCTTGCTCTGGCCTGCTCCCTCTGGCCATATTTATTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTGAACTGAACCACCTCTaGTCAGTGCAGAGGCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGELNHL*SVQRLK Trigger: CTTCAGCCTCTGCACTGAGCAGAGGTGGTTCAGTTC...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTTTCCCAGGAACCACATaGTGGCTCACAACCACCTGT | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGFPGTT*WLTTTC Trigger: ACAGGTGGTTGTGAGCCACCATGTGGTTCCTGGGAA...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTAATAGTGTCAGGCCTTaGGATCTCCCCTTGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGNSVRP*DLPLSW Trigger: CCAGCTCAAGGGGAGATCCCAAGGCCTGACACTATT...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 90 bp | TGTCTGTTTGGTGGTCCAGTGTTTGAGAGATCTTGGGGGTCCAGATaGAGACTGCTGGTTCTCCTACAGGATCACCCTTCTCCTCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: CLFGGPVFERSWGSR*RLLVLLQDHPSPQF Trigger: AAACTGAGGAGAAGGGTGATCCTGTAGGAGAACCAGCAGTCTCAATCTGGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGTAAGAACTGAACCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTACCTGTTATGGGATCTaGCACTCCCTTCTGGAGAGT | + |
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Preference number: 2 (lower is better) Translates to: SVRTEPPLLSAEAEGCFSTCYGI*HSLLES Trigger: ACTCTCCAGAAGGGAGTGTCAGATCCCATAACAGGT...AGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGGTTCAGTTCTTACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTCTGTCTTCTGATCACAACCACCTGTTATaGGATCTGACACTCCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: PPLLSAEAEGCFSCLSSDHNHLL*DLTLPS Trigger: AGAAGGGAGTGTCAGATCCCATAACAGGTGGTTGTG...ATCAGAAGACAGACAAGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAAAACTCCATGTTCACATaGACACACATCTTTCATCTA | + |
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Preference number: 2 (lower is better) Translates to: LTHSHFLALAFPCTEADKNSMFT*THIFHL Trigger: TAGATGAAAGATGTGTGTTCATGTGAACATGGAGTT...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR TCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTCTTTCCACTGATGACTaGCTAGGCCATCTTCTGATA | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGLSTDD*LGHLLI Trigger: TATCAGAAGATGGCCTAGTCAGTCATCAGTGGAAAG...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGTAAGAACTGAACCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTGAATACCAGGAATaGACACATGCAAACATGCCA | + |
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Preference number: 2 (lower is better) Translates to: SVRTEPPLLSAEAEGCFSCEYQE*THANMP Trigger: TGGCATGTTTGCATGTGTGCATTCCTGGTATTCACA...AGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGGTTCAGTTCTTACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTTGTGAATACCAGGAATaGACACATGCAAACATGCCA | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGCEYQE*THANMP Trigger: TGGCATGTTTGCATGTGTGCATTCCTGGTATTCACA...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTCACTATATAGGGTTCTaGGACTTGAACTCAAGACCT | + |
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Preference number: 2 (lower is better) Translates to: HLTLSAACWVFWRAVMIGHYIGF*DLNSRP Trigger: AGGTCTTGAGTTCAAGTCCCAGAACCCTATATAGTG...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR GCA 90 bp | TCCCAACTCCATGTTCACATGAACACACATCTTTCATCTATGCACAGATATACACCAGGAATGCACACATaGAAACATGCCAGGCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: SQLHVHMNTHLSSMHRYTPGMHT*KHARPK Trigger: TTTTGGCCTGGCATGTTTGCATGTGTGCATTCCTGG...TGTATATCTGTGCATAGATGAAAGATGTGTGTTCATGTGAACATGGAGTTGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CCA 72 bp | CCAGTCCCCCACTCACCCACTCCCACTTCCTGGCTCTaGCGTTCCCCTGTACTGAGGCAGATAAAGTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: PVPHSPTPTSWL*RSPVLRQIKFA Trigger: TGCAAACTTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAGTGGGGGACTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CCA 72 bp | CCCAGGAACCACATGGTGGCTCACAACCACCTGTTATaGGATCTGACACTCCCTTCTGGAGAGTCTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: PRNHMVAHNHLL*DLTLPSGESED Trigger: GTCTTCAGACTCTCCAGAAGGGAGTGTCAGATCCCATAACAGGTGGTTGTGAGCCACCATGTGGTTCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 72 bp | GTCTTCTGGAGGGCAGTCATGATAGGTCCCTTTTCGTaGGCACTCCATAGCCTCAGTAATAGTGTCAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: VFWRAVMIGPFS*ALHSLSNSVRP Trigger: AGGCCTGACACTATTACTGAGGCTATGGAGTGCTCACGAAAAGGGACCTATCATGACTGCCCTCCAGAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 72 bp | AGCTGGTGTATGCTGTCTGTTTGGTGGTCCAGTGTTTaGGAGATCTTGGGGGTCCAGATTGAGACTGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: SWCMLSVWWSSV*EILGVQIETAG Trigger: ACCAGCAGTCTCAATCTGGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CAA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAAAGTGTGACCTGGGAATaGAAAACTGAAATAAACCCT | + |
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Preference number: 3 (lower is better) Translates to: LTHSHFLALAFPCTEADKSVTWE*KTEINP Trigger: AGGGTTTATTTCAGTTTTCAATTCCCAGGTCACACT...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CCA 72 bp | CGTAGTCCCAGAAGTCCTCTACTGTATGTGTGTTGGTaGCCTCATATCAGCTGGTGTATGCTGTCTGTTTGG | + |
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Preference number: 3 (lower is better) Translates to: RSPRSPLLYVCW*PHISWCMLSVW Trigger: CCAAACAGACAGCATACACCAGCTGATATGAGGCCACCAACACACATACAGTAGAGGACTTCTGGGACTACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CAA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAATTTAAAAATCTGAGATaGGAGAGATGGCTCAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: LTHSHFLALAFPCTEADKFKNLR*ERWLSD Trigger: ATCACTGAGCCATCTCTCCAATCTCAGATTTTTAAA...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 72 bp | TACACTAGTCTGTACTTCCAGATCCAGGGGATCCCATaGCCTCATCTGACCTCTGTGAATACCAGGAATGCA | + |
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Preference number: 3 (lower is better) Translates to: YTSLYFQIQGIP*PHLTSVNTRNA Trigger: TGCATTCCTGGTATTCACAGAGGTCAGATGAGGTCATGGGATCCCCTGGATCTGGAAGTACAGACTAGTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 72 bp | GCTTCTGTCCATTGGTTGGATGCAAATAACTGCATCTaGCTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: ASVHWLDANNCI*LFQQLVGSSGG Trigger: CCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATGCAGTTATTTGCATCCAACCAATGGACAGAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CAA 90 bp | CCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTCTGTCTTCTGATAGTGTGACCTGGGAATaGAAAACTGAAATAAACCCT | + |
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Preference number: 3 (lower is better) Translates to: PPLLSAEAEGCFSCLSSDSVTWE*KTEINP Trigger: AGGGTTTATTTCAGTTTTCAATTCCCAGGTCACACT...ATCAGAAGACAGACAAGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR GCA 72 bp | TGTATGTGTGTTGGTGGCCTCATATCAGCTGGTGTATaGTGTCTGTTTGGTGGTCCAGTGTTTGAGAGATCT | + |
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Preference number: 3 (lower is better) Translates to: CMCVGGLISAGV*CLFGGPVFERS Trigger: AGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCACCAACACACATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR TCA 72 bp | TTGCATGACCAATGGGCCTCTCTTTCCACTGATGACTaGCTAGGCCATCTTCTGATACATATGCAGTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: LHDQWASLSTDD*LGHLLIHMQSL Trigger: TAAAGACTGCATATGTATCAGAAGATGGCCTAGTCAGTCATCAGTGGAAAGAGAGGCCCATTGGTCATGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCAACTCCATGTTCACATGAACACACATCTTTCATCTATGCACAGATATACATTTAAAAATCTGAGATaGGAGAGATGGCTCAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: SQLHVHMNTHLSSMHRYTFKNLR*ERWLSD Trigger: ATCACTGAGCCATCTCTCCAATCTCAGATTTTTAAA...TGTATATCTGTGCATAGATGAAAGATGTGTGTTCATGTGAACATGGAGTTGGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | CAGGCCTTGGGATCTCCCCTTGAGCTGGATCCCACTTaGGGCCTGTTGCTGGACCTTTTAAGGCCAGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QALGSPLELDPT*GLLLDLLRPVF Trigger: AAAAACTGGCCTTAAAAGGTCCAGCAACAGGCCCAAAGTGGGATCCAGCTCAAGGGGAGATCCCAAGGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | TCAAATAAATATGGCCAGAGGGAGCAGGCCAGAGCAAGCGGGACACAGGAGTGGAAGTGGCTGTCGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SNKYGQREQARASGTQEWKWLSL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCGACAGCCACTT...CCACTCCTGTGTCCCGCTTGCTCTGGCCTGCTCCCTCTGGCCATATTTATTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | GGTGGTCCAGTGTTTGAGAGATCTTGGGGGTCCAGATaGAGACTGCTGGTTCTCCTACAGGATCACCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: GGPVFERSWGSR*RLLVLLQDHPS Trigger: AGAAGGGTGATCCTGTAGGAGAACCAGCAGTCTCAATCTGGACCCCCAAGATCTCTCAAACACTGGACCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | CTCACCCACTCCCACTTCCTGGCTCTGGCGTTCCCCTGTACTGAGGCAGATAAATTCAACACAAACTTCTaGACAGTAAGCATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: LTHSHFLALAFPCTEADKFNTNF*TVSMTG Trigger: CCCAGTCATGCTTACTGTTCAGAAGTTTGTGTTGAA...TTTATCTGCCTCAGTACAGGGGAACGCCAGAGCCAGGAAGTGGGAGTGGGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | TTGGTGGCCTCATATCAGCTGGTGTATGCTGTCTGTTaGGTGGTCCAGTGTTTGAGAGATCTTGGGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LVASYQLVYAVC*VVQCLRDLGGP Trigger: TGGACCCCCAAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCACCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | TGGATGCAAATAACTGCATCTGACTCTTTCAGCAGCTaGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: WMQITASDSFSS*LGLLEGSHDRS Trigger: GGACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATGCAGTTATTTGCATCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTGTTCATAGGGAAGAGTaGGCAGTATTTAGTGACCTT | + |
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Preference number: 4 (lower is better) Translates to: HLTLSAACWVFWRAVMIGVHREE*AVFSDL Trigger: AAGGTCACTAAATACTGCTCACTCTTCCCTATGAAC...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | TCTGTAAGAACTGAACCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTGTTCATAGGGAAGAGTaGGCAGTATTTAGTGACCTT | + |
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Preference number: 4 (lower is better) Translates to: SVRTEPPLLSAEAEGCFSVHREE*AVFSDL Trigger: AAGGTCACTAAATACTGCTCACTCTTCCCTATGAAC...AGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGGTTCAGTTCTTACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | ATGCAAATAACTGCATCTGACTCTTTCAGCAGCTTGTaGGGTCTTCTGGAGGGCAGTCATGATAGGTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: MQITASDSFSSL*GLLEGSHDRSL Trigger: AAGGGACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATGCAGTTATTTGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| 3UTR CAA 72 bp | ATTAAGAGCATTGACTGCTCTTCTAGAGATCCTGAGTaGAATTCCCAGGAACCACATGGTGGCTCACAACCA | + |
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Preference number: 4 (lower is better) Translates to: IKSIDCSSRDPE*NSQEPHGGSQP Trigger: TGGTTGTGAGCCACCATGTGGTTCCTGGGAATTCAACTCAGGATCTCTAGAAGAGCAGTCAATGCTCTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | CATATATCAAATAAATATGGCCAGAGGGAGCAGGCCAGAGCAAGCGGGACACAGCATCTCTTAAGGTTATaGTTGTTGAAATTAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: HISNKYGQREQARASGTQHLLRL*LLKLVP Trigger: GGGGACTAATTTCAACAATCATAACCTTAAGAGATG...CTGTGTCCCGCTTGCTCTGGCCTGCTCCCTCTGGCCATATTTATTTGATATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | TCTGTAAGAACTGAACCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTCATCTCTTAAGGTTATaGTTGTTGAAATTAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SVRTEPPLLSAEAEGCFSHLLRL*LLKLVP Trigger: GGGGACTAATTTCAACAATCATAACCTTAAGAGATG...AGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGGTTCAGTTCTTACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR GCA 90 bp | CCACCTCTGCTCAGTGCAGAGGCTGAAGGCTGCTTTTCTTGTCTGTCTTCTGATTTTATGTTTAAATTTTaGCAACAAAGCGGAGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: PPLLSAEAEGCFSCLSSDFMFKF*QQSGVG Trigger: CCCAACTCCGCTTTGTTGGCAAAATTTAAACATAAA...ATCAGAAGACAGACAAGAAAAGCAGCCTTCAGCCTCTGCACTGAGCAGAGGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR TCA 90 bp | TCCCAACTCCATGTTCACATGAACACACATCTTTCATCTATGCACAGATATACATTCAACACAAACTTCTaGACAGTAAGCATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: SQLHVHMNTHLSSMHRYTFNTNF*TVSMTG Trigger: CCCAGTCATGCTTACTGTTCAGAAGTTTGTGTTGAA...TGTATATCTGTGCATAGATGAAAGATGTGTGTTCATGTGAACATGGAGTTGGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR GCA 90 bp | TCCCAACTCCATGTTCACATGAACACACATCTTTCATCTATGCACAGATATACATTTATGTTTAAATTTTaGCAACAAAGCGGAGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: SQLHVHMNTHLSSMHRYTFMFKF*QQSGVG Trigger: CCCAACTCCGCTTTGTTGGCAAAATTTAAACATAAA...TGTATATCTGTGCATAGATGAAAGATGTGTGTTCATGTGAACATGGAGTTGGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR CAA 90 bp | CATCTGACTCTTTCAGCAGCTTGTTGGGTCTTCTGGAGGGCAGTCATGATAGGTATAAGAAGGAATATATaGGCTAGTGTTCCAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: HLTLSAACWVFWRAVMIGIRRNI*ASVPSP Trigger: TGGACTTGGAACACTAGCCAATATATTCCTTCTTAT...ACCTATCATGACTGCCCTCCAGAAGACCCAACAAGCTGCTGAAAGAGTCAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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| CDS-3UTR CAA 90 bp | TCCCAACTCCATGTTCACATGAACACACATCTTTCATCTATGCACAGATATACAAGTCCCCTGATGATGTaGTTCATAGGGAAGAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: SQLHVHMNTHLSSMHRYTSPLMM*FIGKSE Trigger: CTCACTCTTCCCTATGAACAACATCATCAGGGGACT...TGTATATCTGTGCATAGATGAAAGATGTGTGTTCATGTGAACATGGAGTTGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226457.2 ENSMUST00000227493.2 |
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