Pregenerated sensors for VMN1R36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115482Ensembl transcript IDs: ENSMUST00000226142.2, ENSMUST00000226635.2, ENSMUST00000226728.2, ENSMUST00000226829.2
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAAACATCTGTACCTCCAGATCCAGAGGATCTCATGAGCTCTTCTCAACTCTATCTGATCGTCACAGCCTaGAACACACTCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: KTSVPPDPEDLMSSSQLYLIVTA*NTLRRQ Trigger: CTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAG...ATAGAGTTGAGAAGAGCTCATGAGATCCTCTGGATCTGGAGGTACAGATGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226142.2 ENSMUST00000226829.2 |
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| CDS-3UTR CCA 90 bp | ATGAGCTCTTCTCAACTCTATAAATACCAGGAATGCACACATGCATACATGCCGCTGATCGTCACAGCCTaGAACACACTCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: MSSSQLYKYQECTHAYMPLIVTA*NTLRRQ Trigger: CTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAG...CGGCATGTATGCATGTGTGCATTCCTGGTATTTATAGAGTTGAGAAGAGCTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226142.2 ENSMUST00000226829.2 |
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| CDS-3UTR CCA 90 bp | GTATTGGTGCTGCACCAGCATGGCACCTTAAAAACATCTGTACCTCCAGATCCATTAGTCACCTTCAGCTaGTTGGTCTCACTCCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: VLVLHQHGTLKTSVPPDPLVTFS*LVSLPL Trigger: CAATGGGAGTGAGACCAACCAGCTGAAGGTGACTAA...TGGATCTGGAGGTACAGATGTTTTTAAGGTGCCATGCTGGTGCAGCACCAATAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR CCA 90 bp | CAGCATGGCACCTTAAAAACATCTGTACCTCCAGATCCAGAGGATCTCATGAGCTTAGTCACCTTCAGCTaGTTGGTCTCACTCCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: QHGTLKTSVPPDPEDLMSLVTFS*LVSLPL Trigger: CAATGGGAGTGAGACCAACCAGCTGAAGGTGACTAA...GCTCATGAGATCCTCTGGATCTGGAGGTACAGATGTTTTTAAGGTGCCATGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR CCA 90 bp | ATGAGCTCTTCTCAACTCTATAAATACCAGGAATGCACACATGCATACATGCCGTTAGTCACCTTCAGCTaGTTGGTCTCACTCCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: MSSSQLYKYQECTHAYMPLVTFS*LVSLPL Trigger: CAATGGGAGTGAGACCAACCAGCTGAAGGTGACTAA...CGGCATGTATGCATGTGTGCATTCCTGGTATTTATAGAGTTGAGAAGAGCTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR TCA 90 bp | ATGAGCTCTTCTCAACTCTATAAATACCAGGAATGCACACATGCATACATGCCGAGGTGGTTGATACTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: MSSSQLYKYQECTHAYMPRWLIL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGTATCAACCACCT...CGGCATGTATGCATGTGTGCATTCCTGGTATTTATAGAGTTGAGAAGAGCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR TCA 90 bp | AAAACATCTGTACCTCCAGATCCAGAGGATCTCATGAGCTCTTCTCAACTCTATGTGGTTAATGCTGAATaGCAAATTGAGAGACCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: KTSVPPDPEDLMSSSQLYVVNAE*QIERPK Trigger: TTTTGGTCTCTCAATTTGTCATTCAGCATTAACCAC...ATAGAGTTGAGAAGAGCTCATGAGATCCTCTGGATCTGGAGGTACAGATGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226142.2 ENSMUST00000226829.2 |
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| CDS-3UTR TCA 90 bp | AGTGAAAGGGAGGAACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGCACAGGTGGTTGATACTATaGAGATGCTTGCATTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SEREELRKILWKYEFMLHRWLIL*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGTATCAACCACCT...GTGCAACATAAATTCATATTTCCACAGGATTTTCCTTAGTTCCTCCCTTTCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR TCA 90 bp | AGTGAAAGGGAGGAACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGCACGTGGTTAATGCTGAATaGCAAATTGAGAGACCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SEREELRKILWKYEFMLHVVNAE*QIERPK Trigger: TTTTGGTCTCTCAATTTGTCATTCAGCATTAACCAC...GTGCAACATAAATTCATATTTCCACAGGATTTTCCTTAGTTCCTCCCTTTCACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226142.2 ENSMUST00000226829.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGCTGCACCAGCATGGCACCTTAAAAACATCTGTACCTCCAGATCCACTTCTCAGAACTGATTaGTACCAAAGGAGTAATTGT | + |
|
Preference number: 5 (lower is better) Translates to: VLVLHQHGTLKTSVPPDPLLRTD*YQRSNC Trigger: ACAATTACTCCTTTGGTACAAATCAGTTCTGAGAAG...TGGATCTGGAGGTACAGATGTTTTTAAGGTGCCATGCTGGTGCAGCACCAATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR CAA 90 bp | AAAACATCTGTACCTCCAGATCCAGAGGATCTCATGAGCTCTTCTCAACTCTATAAAAGAAGAAATATATaGGCTATAGCTCCAAGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: KTSVPPDPEDLMSSSQLYKRRNI*AIAPSP Trigger: TGGGCTTGGAGCTATAGCCAATATATTTCTTCTTTT...ATAGAGTTGAGAAGAGCTCATGAGATCCTCTGGATCTGGAGGTACAGATGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226829.2 |
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| CDS-3UTR CAA 90 bp | AAAACATCTGTACCTCCAGATCCAGAGGATCTCATGAGCTCTTCTCAACTCTATCTTCTCAGAACTGATTaGTACCAAAGGAGTAATTGT | + |
|
Preference number: 5 (lower is better) Translates to: KTSVPPDPEDLMSSSQLYLLRTD*YQRSNC Trigger: ACAATTACTCCTTTGGTACAAATCAGTTCTGAGAAG...ATAGAGTTGAGAAGAGCTCATGAGATCCTCTGGATCTGGAGGTACAGATGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS-3UTR CAA 90 bp | AGTGAAAGGGAGGAACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGCACCTTCTCAGAACTGATTaGTACCAAAGGAGTAATTGT | + |
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Preference number: 5 (lower is better) Translates to: SEREELRKILWKYEFMLHLLRTD*YQRSNC Trigger: ACAATTACTCCTTTGGTACAAATCAGTTCTGAGAAG...GTGCAACATAAATTCATATTTCCACAGGATTTTCCTTAGTTCCTCCCTTTCACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226728.2 ENSMUST00000226829.2 |
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| CDS TCA 72 bp | TCATCACTCTGTTTATGTAAGCAGTTGCCTTACATATaGAGTCATTGCCAATGTTCAATGACCCTAAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: SSLCLCKQLPYI*SHCQCSMTLRN Trigger: ATTTCTTAGGGTCATTGAACATTGGCAATGACTTCATATGTAAGGCAACTGCTTACATAAACAGAGTGATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000226142.2 ENSMUST00000226635.2 ENSMUST00000226829.2 |
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