Pregenerated sensors for VMN1R35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060699Ensembl transcript IDs: ENSMUST00000071414.2, ENSMUST00000227346.2, ENSMUST00000227354.2, ENSMUST00000227749.2, ENSMUST00000227961.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATaGATACCAGGAATGCACACATGCATACTTGCCAGTCCAAAACTG | + |
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Preference number: 1 (lower is better) Translates to: CTSRSRGSCELFSPL*IPGMHTCILASPKL Trigger: CAGTTTTGGACTGGCAAGTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGGTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCCCAGGAATGCACACATaGATACTTGCCAGTCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: WHLTNICTSRSRGSCELFPGMHT*ILASPK Trigger: TTTTGGACTGGCAAGTATGCATGTGTGCATTCCTGG...GAAGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTCCAGGAATGCACACATaGATACTTGCCAGTCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: HGTLQTSVPPDPEDHVSSPGMHT*ILASPK Trigger: TTTTGGACTGGCAAGTATGCATGTGTGCATTCCTGG...AGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTATGAATACCAGGAATaGACACATGCATACTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: HGTLQTSVPPDPEDHVSSYEYQE*THAYLP Trigger: TGGCAAGTATGCATGTGTGCATTCCTGGTATTCATA...AGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| 3UTR TCA 72 bp | AGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATaGATACCAGGAATGCACACATGCATACTTGCCAGT | + |
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Preference number: 3 (lower is better) Translates to: RSRGSCELFSPL*IPGMHTCILAS Trigger: ACTGGCAAGTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAAAGGTGGTTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQERWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAACCACCT...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | TGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCAGGTGGTTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: WHLTNICTSRSRGSCELFRWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAACCACCT...GAAGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCTGTAAGCCAAGCATaGCCTCCAGTGAGAAACAAC | + |
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Preference number: 4 (lower is better) Translates to: HGTLQTSVPPDPEDHVSSSVSQA*PPVRNN Trigger: GTTGTTTCTCACTGGAGGGCATGCTTGGCTTACAGA...AGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR TCA 90 bp | TGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCTGAACAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: WHLTNICTSRSRGSCELFSEQSG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTGTTCAGA...GAAGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATCTGAACAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQESEQSG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTGTTCAGA...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATTCATCACAAACTTCTaGACAGTCAGGATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQEFITNF*TVRMTG Trigger: CCCAGTCATCCTGACTGTTCAGAAGTTTGTGATGAA...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | CATGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTAAGCATGCCCTCCAGTaGGAAACAACATTATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: HGTLQTSVPPDPEDHVSSKHALQ*ETTLCE Trigger: TTCACATAATGTTGTTTCTCACTGGAGGGCATGCTT...AGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR TCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAAGTTCATGGGGAAGAGTaGGCAGTATTTAATCACCTT | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQEVHGEE*AVFNHL Trigger: AAGGTGATTAAATACTGCTCACTCTTCCCCATGAAC...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR GCA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACTCTGTAAGCCAAGCATaGCCTCCAGTGAGAAACAAC | + |
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Preference number: 4 (lower is better) Translates to: DHVSSSHLYEYQECTHAYSVSQA*PPVRNN Trigger: GTTGTTTCTCACTGGAGGGCATGCTTGGCTTACAGA...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR TCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAACAGTTGCCTTACATATaGAGTCATTGCCAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQEQLPYI*SHCQCS Trigger: TGAACATTGGCAATGACTTCATATGTAAGGCAACTG...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR TCA 90 bp | TGGCACCTTACAAACATCTGTACCTCCAGATCCAGAGGATCATGTGAGCTCTTCCAGTTGCCTTACATATaGAGTCATTGCCAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: WHLTNICTSRSRGSCELFQLPYI*SHCQCS Trigger: TGAACATTGGCAATGACTTCATATGTAAGGCAACTG...GAAGAGCTCACATGATCCTCTGGATCTGGAGGTACAGATGTTTGTAAGGTGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR TCA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACTCTGAACAGTCAGGATaGCTGGGTCATACATCCATA | + |
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Preference number: 4 (lower is better) Translates to: DHVSSSHLYEYQECTHAYSEQSG*LGHTSI Trigger: TATGGATGTATGACCCAGTCATCCTGACTGTTCAGA...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACTTCATCACAAACTTCTaGACAGTCAGGATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: DHVSSSHLYEYQECTHAYFITNF*TVRMTG Trigger: CCCAGTCATCCTGACTGTTCAGAAGTTTGTGATGAA...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000227346.2 ENSMUST00000227354.2 ENSMUST00000227749.2 ENSMUST00000227961.2 |
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| CDS-3UTR TCA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACAAGCATGCCCTCCAGTaGGAAACAACATTATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: DHVSSSHLYEYQECTHAYKHALQ*ETTLCE Trigger: TTCACATAATGTTGTTTCTCACTGGAGGGCATGCTT...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR GCA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATATAGCTCCAAGCCCTaGTTGGAAATAAAGGATATT | + |
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Preference number: 4 (lower is better) Translates to: PPDPEDHVSSSHLYEYQEYSSKP*LEIKDI Trigger: AATATCCTTTATTTCCAAGCAGGGCTTGGAGCTATA...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR GCA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACTATAGCTCCAAGCCCTaGTTGGAAATAAAGGATATT | + |
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Preference number: 4 (lower is better) Translates to: DHVSSSHLYEYQECTHAYYSSKP*LEIKDI Trigger: AATATCCTTTATTTCCAAGCAGGGCTTGGAGCTATA...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR CAA 90 bp | CCTCCAGATCCAGAGGATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAAAGCTCCAAGCCCTGCTaGGAAATAAAGGATATTATT | + |
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Preference number: 5 (lower is better) Translates to: PPDPEDHVSSSHLYEYQESSKPC*EIKDII Trigger: AATAATATCCTTTATTTCCAAGCAGGGCTTGGAGCT...TTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATCCTCTGGATCTGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS-3UTR CAA 90 bp | GATCATGTGAGCTCTTCTCACCTCTATGAATACCAGGAATGCACACATGCATACAGCTCCAAGCCCTGCTaGGAAATAAAGGATATTATT | + |
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Preference number: 5 (lower is better) Translates to: DHVSSSHLYEYQECTHAYSSKPC*EIKDII Trigger: AATAATATCCTTTATTTCCAAGCAGGGCTTGGAGCT...GTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGAGAAGAGCTCACATGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS TCA 90 bp | TATGTAAGCAGTTGCCTTACATATGAAGTCATTGCCAATGTTCAATaGCACAAAGAAATCTGTAAGCCAAGCATGCCCTCCAGTGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: YVSSCLTYEVIANVQ*HKEICKPSMPSSEK Trigger: TTTCTCACTGGAGGGCATGCTTGGCTTACAGATTTCTTTGTGTCATTGAACATTGGCAATGACTTCATATGTAAGGCAACTGCTTACATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071414.2 ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS TCA 90 bp | CACGTTGGTATAAGCACCAGTATAGATGATCCTGTTAATGCTGAATaGCAAATTGAAAGACCAAAAATAGAAGAAGGAAGAGATCATGTA | + |
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Preference number: 5 (lower is better) Translates to: HVGISTSIDDPVNAE*QIERPKIEEGRDHV Trigger: TACATGATCTCTTCCTTCTTCTATTTTTGGTCTTTCAATTTGTCATTCAGCATTAACAGGATCATCTATACTGGTGCTTATACCAACGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000071414.2 ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS CAA 90 bp | AGCATGCCCTCCAGTGAGAAACAACATTATGTGAATGAAGGTCAATaGACAGGAGATCATGTCCATGGGCTTAGATCTGTGACACAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SMPSSEKQHYVNEGQ*TGDHVHGLRSVTQD Trigger: ATCCTGTGTCACAGATCTAAGCCCATGGACATGATCTCCTGTCAATTGACCTTCATTCACATAATGTTGTTTCTCACTGGAGGGCATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071414.2 ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS CAA 72 bp | TCCAGTGAGAAACAACATTATGTGAATGAAGGTCAATaGACAGGAGATCATGTCCATGGGCTTAGATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSEKQHYVNEGQ*TGDHVHGLRSV Trigger: CACAGATCTAAGCCCATGGACATGATCTCCTGTCAATTGACCTTCATTCACATAATGTTGTTTCTCACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071414.2 ENSMUST00000227354.2 ENSMUST00000227749.2 |
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| CDS TCA 72 bp | TCATCACCCTGTTTATGTAAGCAGTTGCCTTACATATaGAGTCATTGCCAATGTTCAATGACACAAAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: SSPCLCKQLPYI*SHCQCSMTQRN Trigger: ATTTCTTTGTGTCATTGAACATTGGCAATGACTTCATATGTAAGGCAACTGCTTACATAAACAGGGTGATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071414.2 ENSMUST00000227354.2 ENSMUST00000227749.2 |
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