Pregenerated sensors for VMN1R34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091012Ensembl transcript IDs: ENSMUST00000074381.6, ENSMUST00000226262.2, ENSMUST00000226910.2, ENSMUST00000226999.2, ENSMUST00000227332.2, ENSMUST00000228498.2, ENSMUST00000228647.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTACCTCCAGATCCAGAGGATCGCATGAGCTCTTCCCACCTCTATaGATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTG | + |
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Preference number: 1 (lower is better) Translates to: STSRSRGSHELFPPL*IPGMHTCIHADPKL Trigger: CAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGGGAAGAGCTCATGCGATCCTCTGGATCTGGAGGTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCCAGGAATGCACACATaGATACATGCCGATCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: AAWHLTNISTSRSRGSHEPGMHT*IHADPK Trigger: TTTTGGATCGGCATGTATGCATGTGTGCATTCCTGG...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTCCAGGAATGCACACATaGATACATGCCGATCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSPGMHT*IHADPK Trigger: TTTTGGATCGGCATGTATGCATGTGTGCATTCCTGG...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGTATGAATACCAGGAATaGACACATGCATACATGCCG | + |
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Preference number: 2 (lower is better) Translates to: AAWHLTNISTSRSRGSHEYEYQE*THAYMP Trigger: CGGCATGTATGCATGTGTGCATTCCTGGTATTCATA...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTTATGAATACCAGGAATaGACACATGCATACATGCCG | + |
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Preference number: 2 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSYEYQE*THAYMP Trigger: CGGCATGTATGCATGTGTGCATTCCTGGTATTCATA...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| 3UTR TCA 72 bp | AGATCCAGAGGATCGCATGAGCTCTTCCCACCTCTATaGATACCAGGAATGCACACATGCATACATGCCGAT | + |
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Preference number: 3 (lower is better) Translates to: RSRGSHELFPPL*IPGMHTCIHAD Trigger: ATCGGCATGTATGCATGTGTGCATTCCTGGTATTCATAGAGGTGGGAAGAGCTCATGCGATCCTCTGGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGAAGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: AAWHLTNISTSRSRGSHEKWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACTT...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR GCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGTCTTTTCTCAGGGGATaGTCTGAAGTGGCTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: AAWHLTNISTSRSRGSHESFLRG*SEVADA Trigger: AGCATCAGCCACTTCAGAGCATCCCCTGAGAAAAGA...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGGTTCATGGGGAAGAGTaGGCAGTATTTAGTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: AAWHLTNISTSRSRGSHEVHGEE*AVFSHL Trigger: AAGGTGACTAAATACTGCTCACTCTTCCCCATGAAC...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR GCA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTTCTTTTCTCAGGGGATaGTCTGAAGTGGCTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSSFLRG*SEVADA Trigger: AGCATCAGCCACTTCAGAGCATCCCCTGAGAAAAGA...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CCA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGTGGTCTCACTCACGTTaGTATAAGCACCAGCATAGA | + |
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Preference number: 4 (lower is better) Translates to: AAWHLTNISTSRSRGSHEWSHSR*YKHQHR Trigger: TCTATGCTGGTGCTTATACCAACGTGAGTGAGACCA...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTGTTCATGGGGAAGAGTaGGCAGTATTTAGTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSVHGEE*AVFSHL Trigger: AAGGTGACTAAATACTGCTCACTCTTCCCCATGAAC...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAAAAGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKKWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACTT...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR GCA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAATCTTTTCTCAGGGGATaGTCTGAAGTGGCTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKSFLRG*SEVADA Trigger: AGCATCAGCCACTTCAGAGCATCCCCTGAGAAAAGA...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAAGTTCATGGGGAAGAGTaGGCAGTATTTAGTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKVHGEE*AVFSHL Trigger: AAGGTGACTAAATACTGCTCACTCTTCCCCATGAAC...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CCA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAATGGTCTCACTCACGTTaGTATAAGCACCAGCATAGA | + |
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Preference number: 4 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKWSHSR*YKHQHR Trigger: TCTATGCTGGTGCTTATACCAACGTGAGTGAGACCA...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | AGTAAAAGGGAGGGACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGTACAAGTGGCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SKREGLRKILWKYEFMLYKWLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGCCACTT...GTACAACATAAATTCATATTTCCACAGGATTTTCCTTAGTCCCTCCCTTTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR GCA 90 bp | AGTAAAAGGGAGGGACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGTACTCTTTTCTCAGGGGATaGTCTGAAGTGGCTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: SKREGLRKILWKYEFMLYSFLRG*SEVADA Trigger: AGCATCAGCCACTTCAGAGCATCCCCTGAGAAAAGA...GTACAACATAAATTCATATTTCCACAGGATTTTCCTTAGTCCCTCCCTTTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CCA 90 bp | AGTAAAAGGGAGGGACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGTACTGGTCTCACTCACGTTaGTATAAGCACCAGCATAGA | + |
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Preference number: 4 (lower is better) Translates to: SKREGLRKILWKYEFMLYWSHSR*YKHQHR Trigger: TCTATGCTGGTGCTTATACCAACGTGAGTGAGACCA...GTACAACATAAATTCATATTTCCACAGGATTTTCCTTAGTCCCTCCCTTTTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAATACTTGTGGTTAGCATaGCTCCTACAAGAAATACAT | + |
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Preference number: 4 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKYLWLA*LLQEIH Trigger: ATGTATTTCTTGTAGGAGTCATGCTAACCACAAGTA...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR TCA 90 bp | AGTAAAAGGGAGGGACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGTACTACTTGTGGTTAGCATaGCTCCTACAAGAAATACAT | + |
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Preference number: 4 (lower is better) Translates to: SKREGLRKILWKYEFMLYYLWLA*LLQEIH Trigger: ATGTATTTCTTGTAGGAGTCATGCTAACCACAAGTA...GTACAACATAAATTCATATTTCCACAGGATTTTCCTTAGTCCCTCCCTTTTACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CAA 90 bp | GCAGCATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGAGCTCCAAGCCCAGCTaGGAAATAAAGGATATTATT | + |
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Preference number: 5 (lower is better) Translates to: AAWHLTNISTSRSRGSHESSKPS*EIKDII Trigger: AATAATATCCTTTATTTCCAAGCTGGGCTTGGAGCT...CTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATGCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CAA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTAGCTCCAAGCCCAGCTaGGAAATAAAGGATATTATT | + |
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Preference number: 5 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSSSKPS*EIKDII Trigger: AATAATATCCTTTATTTCCAAGCTGGGCTTGGAGCT...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CAA 90 bp | CATGGCACCTTACAAACATCTCTACCTCCAGATCCAGAGGATCGCATGAGCTCTAAAAGAAGAAATATATaGGCCATAGCTCCAAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: HGTLQTSLPPDPEDRMSSKRRNI*AIAPSP Trigger: TGGGCTTGGAGCTATGGCCAATATATTTCTTCTTTT...AGAGCTCATGCGATCCTCTGGATCTGGAGGTAGAGATGTTTGTAAGGTGCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CAA 90 bp | AATACCAGGAATGCACACATGCATACATGCCGATCCAAAACTGATACATACAAAAAAAGAAGAAATATATaGGCCATAGCTCCAAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: NTRNAHMHTCRSKTDTYKKRRNI*AIAPSP Trigger: TGGGCTTGGAGCTATGGCCAATATATTTCTTCTTTT...TTTGTATGTATCAGTTTTGGATCGGCATGTATGCATGTGTGCATTCCTGGTATT 39% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS-3UTR CAA 90 bp | AGTAAAAGGGAGGGACTAAGGAAAATCCTGTGGAAATATGAATTTATGTTGTACAGCTCCAAGCCCAGCTaGGAAATAAAGGATATTATT | + |
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Preference number: 5 (lower is better) Translates to: SKREGLRKILWKYEFMLYSSKPS*EIKDII Trigger: AATAATATCCTTTATTTCCAAGCTGGGCTTGGAGCT...GTACAACATAAATTCATATTTCCACAGGATTTTCCTTAGTCCCTCCCTTTTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS CAA 90 bp | AACATTCCCTCCAGTGAGACACATCATTGTGTGAACGAAGGTCAATaGACAGGAGATCATGTCCATGGGCTTAGATCTGTGACACAGGAT | + |
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Preference number: 6 (lower is better) Translates to: NIPSSETHHCVNEGQ*TGDHVHGLRSVTQD Trigger: ATCCTGTGTCACAGATCTAAGCCCATGGACATGATCTCCTGTCAATTGACCTTCGTTCACACAATGATGTGTCTCACTGGAGGGAATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000074381.6 ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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| CDS CAA 72 bp | TCCAGTGAGACACATCATTGTGTGAACGAAGGTCAATaGACAGGAGATCATGTCCATGGGCTTAGATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSETHHCVNEGQ*TGDHVHGLRSV Trigger: CACAGATCTAAGCCCATGGACATGATCTCCTGTCAATTGACCTTCGTTCACACAATGATGTGTCTCACTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000074381.6 ENSMUST00000226262.2 ENSMUST00000226910.2 ENSMUST00000226999.2 ENSMUST00000227332.2 ENSMUST00000228498.2 ENSMUST00000228647.2 |
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