Pregenerated sensors for VMN1R33 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059375

Ensembl transcript IDs: ENSMUST00000227418.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	AAAATCTGGGGCTGGAGAGATGGCTCAGTGGTTGAGAGAACTGACTaGTCTCCCAGAGGATCTGAGTTCAATTCGCAGCAACCACATGGT	+
Preference number: 1 (lower is better) Translates to: KIWGWRDGSVVERTD*SPRGSEFNSQQPHG Trigger: ACCATGTGGTTGCTGCGAATTGAACTCAGATCCTCTGGGAGAGCAGTCAGTTCTCTCAACCACTGAGCCATCTCTCCAGCCCCAGATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR TCA 90 bp	ATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCAGCCCTGATACAGGAGATCCCATaGCCTCATCTGACCTCTGTG	+
Preference number: 2 (lower is better) Translates to: IKPVSFFVPLTSASVPALIQEIP*PHLTSV Trigger: CACAGAGGTCAGATGAGGTCATGGGATCTCCTGTAT...CAGGGCTGGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR GCA 90 bp	CTGATGCCACTTTCGACTGTGTCTGAAGACAGTGACAGTGTCCCCACATATATGTGTTCCACTGACCTCTaGTTCAGTTCCAGCCCTGAC	+
Preference number: 2 (lower is better) Translates to: LMPLSTVSEDSDSVPTYMCSTDL*FSSSPD Trigger: GTCAGGGCTGGAACTGAAGCAGAGGTCAGTGGAACA...CATATATGTGGGGACACTGTCACTGTCTTCAGACACAGTCGAAAGTGGCATCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR GCA 90 bp	CTGATGCCACTTTCGACTGTGTCTGAAGACAGTGACAGTGTCCCCACATATATGCCAGGAATGCACACATaGATACATGCCAGGCCAAAA	+
Preference number: 2 (lower is better) Translates to: LMPLSTVSEDSDSVPTYMPGMHT*IHARPK Trigger: TTTTGGCCTGGCATGTATGCATGTGTGCATTCCTGG...CATATATGTGGGGACACTGTCACTGTCTTCAGACACAGTCGAAAGTGGCATCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR GCA 90 bp	CATGGGGATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCTGTGAATACCAGGAATaGACACATGCATACATGCCA	+
Preference number: 2 (lower is better) Translates to: HGDQASKLLCSTDLCFSSCEYQE*THAYMP Trigger: TGGCATGTATGCATGTGTGCATTCCTGGTATTCACA...GGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGATCCCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR GCA 90 bp	ATTATTGGTGCTGCACCAGCATGGCACGTTACAGCAGTCTGTACTTCCAGATACGCACACATGCATACATaGCAGGCCAAAACTAATACA	+
Preference number: 2 (lower is better) Translates to: IIGAAPAWHVTAVCTSRYAHMHT*QAKTNT Trigger: TGTATTAGTTTTGGCCTGGCATGTATGCATGTGTGC...GTATCTGGAAGTACAGACTGCTGTAACGTGCCATGCTGGTGCAGCACCAATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR-3UTR TCA 90 bp	TTGCTACTTGAACTATTGAACAGTTTAAGAAAAATCTGGGGCTGGAGAGATGGCGCTTCTTTGTTCCACTaGCCTCTGCTTCAGTTCCAG	+
Preference number: 2 (lower is better) Translates to: LLLELLNSLRKIWGWRDGASLFH*PLLQFQ Trigger: CTGGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGC...GCCATCTCTCCAGCCCCAGATTTTTCTTAAACTGTTCAATAGTTCAAGTAGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
3UTR TCA 72 bp	TACAGCAGTCTGTACTTCCAGATACAGGAGATCCCATaGCCTCATCTGACCTCTGTGAATACCAGGAATGCA	+
Preference number: 3 (lower is better) Translates to: YSSLYFQIQEIP*PHLTSVNTRNA Trigger: TGCATTCCTGGTATTCACAGAGGTCAGATGAGGTCATGGGATCTCCTGTATCTGGAAGTACAGACTGCTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR TCA 90 bp	ATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCAGCCCTGAAGTGGCTGTCGCTATaGAGATGCATGCATTGCCTC	+
Preference number: 4 (lower is better) Translates to: IKPVSFFVPLTSASVPALKWLSL*RCMHCL Trigger: GAGGCAATGCATGCATCTTCATAGCGACAGCCACTT...CAGGGCTGGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR TCA 90 bp	TTGCTACTTGAACTATTGAACAGTTTAAGAAAAATCTGGGGCTGGAGAGATGGCAGTCTATCCAGTACATaGCCACATAGAAAAACACCA	+
Preference number: 4 (lower is better) Translates to: LLLELLNSLRKIWGWRDGSLSST*PHRKTP Trigger: TGGTGTTTTTCTATGTGGTCATGTACTGGATAGACT...GCCATCTCTCCAGCCCCAGATTTTTCTTAAACTGTTCAATAGTTCAAGTAGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR TCA 90 bp	TTGCTACTTGAACTATTGAACAGTTTAAGAAAAATCTGGGGCTGGAGAGATGGCTTTATCACAAACTTCTaGACAGTCAACAAGACTGGG	+
Preference number: 4 (lower is better) Translates to: LLLELLNSLRKIWGWRDGFITNF*TVNKTG Trigger: CCCAGTCTTGTTGACTGTTCAGAAGTTTGTGATAAA...GCCATCTCTCCAGCCCCAGATTTTTCTTAAACTGTTCAATAGTTCAAGTAGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR CAA 90 bp	ATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCAGCCCTGGCCAACAAAGAGGTATaGGGACTGATCGTCACAGCC	+
Preference number: 5 (lower is better) Translates to: IKPVSFFVPLTSASVPALANKEV*GLIVTA Trigger: GGCTGTGACGATCAGTCCCAATACCTCTTTGTTGGC...CAGGGCTGGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR CAA 90 bp	CATGGGGATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCATGAAGATGCATGCATaGCCTCTGATGTCTGAACAA	+
Preference number: 5 (lower is better) Translates to: HGDQASKLLCSTDLCFSSMKMHA*PLMSEQ Trigger: TTGTTCAGACATCAGAGGCAATGCATGCATCTTCAT...GGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGATCCCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR CAA 90 bp	ATCAAGCCAGTAAGCTTCTTTGTTCCACTGACCTCTGCTTCAGTTCCAGCCCTGGGTTCCAAGTCCAGCTaGGACATAAAAGACATTATT	+
Preference number: 5 (lower is better) Translates to: IKPVSFFVPLTSASVPALGSKSS*DIKDII Trigger: AATAATGTCTTTTATGTCCAAGCTGGACTTGGAACC...CAGGGCTGGAACTGAAGCAGAGGTCAGTGGAACAAAGAAGCTTACTGGCTTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR CAA 90 bp	CAATTCGCAGCAACCACATGGTGGCTCATAACCATCTGTAATGGGGATCTGATGAAAAGAAGAAATATATaGGCTAGGGTTCCAAGTCCA	+
Preference number: 5 (lower is better) Translates to: QFAATTWWLITICNGDLMKRRNI*ARVPSP Trigger: TGGACTTGGAACCCTAGCCAATATATTTCTTCTTTT...CATCAGATCCCCATTACAGATGGTTATGAGCCACCATGTGGTTGCTGCGAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227418.2
CDS-3UTR CAA 90 bp	TTGCTACTTGAACTATTGAACAGTTTAAGAAAAATCTGGGGCTGGAGAGATGGCTGGTCTCACTCACATTaGTATAAGCACCAGTATAGA	+
Preference number: 5 (lower is better) Translates to: LLLELLNSLRKIWGWRDGWSHSH*YKHQYR Trigger: TCTATACTGGTGCTTATACAAATGTGAGTGAGACCA...GCCATCTCTCCAGCCCCAGATTTTTCTTAAACTGTTCAATAGTTCAAGTAGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227418.2