Pregenerated sensors for VMN1R31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115404Ensembl transcript IDs: ENSMUST00000176023.3, ENSMUST00000176147.9, ENSMUST00000177318.3, ENSMUST00000226390.2, ENSMUST00000228586.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGAAAGGCAGTTCTGTTGGGAATGGATTCCATGACAGACAGCAGCTaGAGGAACCAGCACCACTTGTTGGGAGAAATCCACATGGTGACT | + |
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Preference number: 2 (lower is better) Translates to: RKAVLLGMDSMTDSS*RNQHHLLGEIHMVT Trigger: AGTCACCATGTGGATTTCTCCCAACAAGTGGTGCTGGTTCCTCAAGCTGCTGTCTGTCATGGAATCCATTCCCAACAGAACTGCCTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTTCAGAGGATACCATaGCATCTTCTCACCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPFQRIP*HLLTSV Trigger: CACAGAGGTGAGAAGATGTCATGGTATCCTCTGAAA...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAATCTTCTCACCTCTGTaGGTAGCAGGAATACATGCA | + |
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Preference number: 2 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPIFSPL*VAGIHA Trigger: TGCATGTATTCCTGCTACCCACAGAGGTGAGAAGAT...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGGGTAGCAGGAATACATaGATACATATATGCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRGSRNT*IHICWH Trigger: GTGCCAGCATATATGTATGCATGTATTCCTGCTACC...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAGGTAGCAGGAATACATaGATACATATATGCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPGSRNT*IHICWH Trigger: GTGCCAGCATATATGTATGCATGTATTCCTGCTACC...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCACCTTATAGCCATCTATaGGTCCAATTTCAGAGGATA | + |
|
Preference number: 2 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPPYSHL*VQFQRI Trigger: TATCCTCTGAAATTGGACTCATAGATGGCTATAAGG...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACATCTTCTCACCTCTGTaGGTAGCAGGAATACATGCA | + |
|
Preference number: 2 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYIFSPL*VAGIHA Trigger: TGCATGTATTCCTGCTACCCACAGAGGTGAGAAGAT...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTTCAGAGGATACCATaGCATCTTCTCACCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIFQRIP*HLLTSV Trigger: CACAGAGGTGAGAAGATGTCATGGTATCCTCTGAAA...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAGAGAAATCCACATGGTaGCTGGACTGTACATCTGCT | + |
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Preference number: 2 (lower is better) Translates to: SKDLLLSKLSSKGIFILQEKSTW*LDCTSA Trigger: AGCAGATGTACAGTCCAGTCACCATGTGGATTTCTC...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAATTTCAGAGGATACCATaGCATCTTCTCACCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: SKDLLLSKLSSKGIFILQFQRIP*HLLTSV Trigger: CACAGAGGTGAGAAGATGTCATGGTATCCTCTGAAA...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR GCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTGGTAGCAGGAATACATaGATACATATATGCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIGSRNT*IHICWH Trigger: GTGCCAGCATATATGTATGCATGTATTCCTGCTACC...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAATCTTCTCACCTCTGTaGGTAGCAGGAATACATGCA | + |
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Preference number: 2 (lower is better) Translates to: SKDLLLSKLSSKGIFILQIFSPL*VAGIHA Trigger: TGCATGTATTCCTGCTACCCACAGAGGTGAGAAGAT...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR TCA 90 bp | TCATTCATTCATTCATTCATTCATTTAAATATCAACCAGGAGCCCTCTCACAGGCCTTATAGCCATCTATaGGTCCAATTTCAGAGGATA | + |
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Preference number: 2 (lower is better) Translates to: SFIHSFIHLNINQEPSHRPYSHL*VQFQRI Trigger: TATCCTCTGAAATTGGACTCATAGATGGCTATAAGG...CCTGTGAGAGGGCTCCTGGTTGATATTTAAATGAATGAATGAATGAATGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CAA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGATGACAGACAGCAGCTaGAGGAACCAGCACCACTTG | + |
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Preference number: 3 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRMTDSS*RNQHHL Trigger: CAAGTGGTGCTGGTTCCTCAAGCTGCTGTCTGTCAT...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CAA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGAGGAACCAGCACCACTaGTTGGGAGAAATCCACATG | + |
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Preference number: 3 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRRNQHH*LGEIHM Trigger: CATGTGGATTTCTCCCAACAAGTGGTGCTGGTTCCT...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CAA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTATGACAGACAGCAGCTaGAGGAACCAGCACCACTTG | + |
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Preference number: 3 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIMTDSS*RNQHHL Trigger: CAAGTGGTGCTGGTTCCTCAAGCTGCTGTCTGTCAT...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAAGGAACCAGCACCACTaGTTGGGAGAAATCCACATG | + |
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Preference number: 3 (lower is better) Translates to: SKDLLLSKLSSKGIFILQRNQHH*LGEIHM Trigger: CATGTGGATTTCTCCCAACAAGTGGTGCTGGTTCCT...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR-3UTR CAA 90 bp | TCATTCATTCATTCATTCATTCATTTAAATATCAACCAGGAGCCCTCTCACAGGAGGAACCAGCACCACTaGTTGGGAGAAATCCACATG | + |
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Preference number: 3 (lower is better) Translates to: SFIHSFIHLNINQEPSHRRNQHH*LGEIHM Trigger: CATGTGGATTTCTCCCAACAAGTGGTGCTGGTTCCT...CCTGTGAGAGGGCTCCTGGTTGATATTTAAATGAATGAATGAATGAATGAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR TCA 72 bp | AACCTTAGAAAGTCACTAACAGCAAGGATCTCCTTTTaGGTAAACTCAGCAGCAAGGGAATATTCATTTTAC | + |
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Preference number: 3 (lower is better) Translates to: NLRKSLTARISF*VNSAAREYSFY Trigger: GTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGTGACTTTCTAAGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR CAA 72 bp | GCATCCTCTCCAGCTGAGGCTAGAAAGGCAGTTCTGTaGGGAATGGATTCCATGACAGACAGCAGCTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: ASSPAEARKAVL*GMDSMTDSSLR Trigger: CCTCAAGCTGCTGTCTGTCATGGAATCCATTCCCAACAGAACTGCCTTTCTAGCCTCAGCTGGAGAGGATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGGTTCATGGGGAAGAGTaGGCAGGATTCAGTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRVHGEE*AGFSDL Trigger: CAGGTCACTGAATCCTGCTCACTCTTCCCCATGAAC...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGATGCTCTCAGGTGGCTaGTGCTATGAAGGTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRMLSGG*CYEGAC Trigger: GCAAGCACCTTCATAGCATCAGCCACCTGAGAGCAT...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| 3UTR CAA 72 bp | TCCATGACAGACAGCAGCTTGAGGAACCAGCACCACTaGTTGGGAGAAATCCACATGGTGACTGGACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: SMTDSSLRNQHH*LGEIHMVTGLY Trigger: GTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGCTGGTTCCTCAAGCTGCTGTCTGTCATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAGTGAGCAGGATTCAGTaGCCTGCATCTGGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPVSRIQ*PASGYS Trigger: AGAATAACCAGATGCAGGTCACTGAATCCTGCTCAC...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATAGGTGGCTGATGCTATaGAGGTGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: APLVGRNPHGDWTVHLLHRWLML*RCLHCL Trigger: GAGGCAATGCAAGCACCTTCATAGCATCAGCCACCT...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATATGCTCTCAGGTGGCTaGTGCTATGAAGGTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: APLVGRNPHGDWTVHLLHMLSGG*CYEGAC Trigger: GCAAGCACCTTCATAGCATCAGCCACCTGAGAGCAT...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAACAGGTCCCCTCCAGTaGGAAACATCATCATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPTGPLQ*ETSSCE Trigger: TTCACATGATGATGTTTCTCACTGGAGGGGACCTGT...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CCA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGCTGATAGTGACAGCCTaGAACACACTTAGGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRLIVTA*NTLRRQ Trigger: TTGCCTCCTAAGTGTGTTCCAGGCTGTCACTATCAG...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTACATTACAAACTTCTaGACCCTCAGGATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRYITNF*TLRMTG Trigger: CCCAGTCATCCTGAGGGTTCAGAAGTTTGTAATGTA...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATGTGAGCAGGATTCAGTaGCCTGCATCTGGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: APLVGRNPHGDWTVHLLHVSRIQ*PASGYS Trigger: AGAATAACCAGATGCAGGTCACTGAATCCTGCTCAC...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACAGGTGGCTGATGCTATaGAGGTGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYRWLML*RCLHCL Trigger: GAGGCAATGCAAGCACCTTCATAGCATCAGCCACCT...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACATGCTCTCAGGTGGCTaGTGCTATGAAGGTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYMLSGG*CYEGAC Trigger: GCAAGCACCTTCATAGCATCAGCCACCTGAGAGCAT...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAAAAGAAGAAACATATTaGCTAAGGCTCCAAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPKEETY*LRLQVQ Trigger: CTGGACTTGGAGCCTTAGCCAATATGTTTCTTCTTT...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACCTGATAGTGACAGCCTaGAACACACTTAGGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYLIVTA*NTLRRQ Trigger: TTGCCTCCTAAGTGTGTTCCAGGCTGTCACTATCAG...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTAGGTGGCTGATGCTATaGAGGTGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIRWLML*RCLHCL Trigger: GAGGCAATGCAAGCACCTTCATAGCATCAGCCACCT...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACAGGTGGCTGATGCTATaGAGGTGCTTGCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNRWLML*RCLHCL Trigger: GAGGCAATGCAAGCACCTTCATAGCATCAGCCACCT...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTCAATGCTCAGTGTTaGAAATATGTCTGTAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPFNAQC*KYVCKQ Trigger: TTGCTTACAGACATATTTGCAACACTGAGCATTGAA...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAGTTCATGGGGAAGAGTaGGCAGGATTCAGTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: SKDLLLSKLSSKGIFILQVHGEE*AGFSDL Trigger: CAGGTCACTGAATCCTGCTCACTCTTCCCCATGAAC...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATTACTTGTGGTCATCATaGTTCCTACAAGAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: APLVGRNPHGDWTVHLLHYLWSS*FLQETH Trigger: ATGTGTTTCTTGTAGGAATCATGATGACCACAAGTA...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATTGGTGGTGCTTTGAGTaGATGTTTTTCAGCATAATT | + |
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Preference number: 4 (lower is better) Translates to: APLVGRNPHGDWTVHLLHWWCFE*MFFSII Trigger: AATTATGCTGAAAAACATGCACTCAAAGCACCACCA...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACGTGAGCAGGATTCAGTaGCCTGCATCTGGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNVSRIQ*PASGYS Trigger: AGAATAACCAGATGCAGGTCACTGAATCCTGCTCAC...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACCTGATAGTGACAGCCTaGAACACACTTAGGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNLIVTA*NTLRRQ Trigger: TTGCCTCCTAAGTGTGTTCCAGGCTGTCACTATCAG...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACTACTTGTGGTCATCATaGTTCCTACAAGAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYYLWSS*FLQETH Trigger: ATGTGTTTCTTGTAGGAATCATGATGACCACAAGTA...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTACATTACAAACTTCTaGACCCTCAGGATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIYITNF*TLRMTG Trigger: CCCAGTCATCCTGAGGGTTCAGAAGTTTGTAATGTA...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACTACATTACAAACTTCTaGACCCTCAGGATGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNYITNF*TLRMTG Trigger: CCCAGTCATCCTGAGGGTTCAGAAGTTTGTAATGTA...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAACAGGTCCCCTCCAGTaGGAAACATCATCATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SKDLLLSKLSSKGIFILQTGPLQ*ETSSCE Trigger: TTCACATGATGATGTTTCTCACTGGAGGGGACCTGT...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CCA 90 bp | TCATTCATTCATTCATTCATTCATTTAAATATCAACCAGGAGCCCTCTCACAGGCTGATAGTGACAGCCTaGAACACACTTAGGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SFIHSFIHLNINQEPSHRLIVTA*NTLRRQ Trigger: TTGCCTCCTAAGTGTGTTCCAGGCTGTCACTATCAG...CCTGTGAGAGGGCTCCTGGTTGATATTTAAATGAATGAATGAATGAATGAATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACTTCAATGCTCAGTGTTaGAAATATGTCTGTAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYFNAQC*KYVCKQ Trigger: TTGCTTACAGACATATTTGCAACACTGAGCATTGAA...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTGGCCTCTTGTCACTCTaGTTATGTAAAATGTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIGLLSL*LCKMLP Trigger: AGGCAACATTTTACATAAGCAGAGTGACAAGAGGCC...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAAGGCCTCTTGTCACTCTaGTTATGTAAAATGTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SKDLLLSKLSSKGIFILQGLLSL*LCKMLP Trigger: AGGCAACATTTTACATAAGCAGAGTGACAAGAGGCC...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACTACTTGTGGTCATCATaGTTCCTACAAGAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNYLWSS*FLQETH Trigger: ATGTGTTTCTTGTAGGAATCATGATGACCACAAGTA...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTGGTGGTGCTTTGAGTaGATGTTTTTCAGCATAATT | + |
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Preference number: 4 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIWWCFE*MFFSII Trigger: AATTATGCTGAAAAACATGCACTCAAAGCACCACCA...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACTGGTGGTGCTTTGAGTaGATGTTTTTCAGCATAATT | + |
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Preference number: 4 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNWWCFE*MFFSII Trigger: AATTATGCTGAAAAACATGCACTCAAAGCACCACCA...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR TCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAATACTTGTGGTCATCATaGTTCCTACAAGAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: SKDLLLSKLSSKGIFILQYLWSS*FLQETH Trigger: ATGTGTTTCTTGTAGGAATCATGATGACCACAAGTA...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | TCATTCATTCATTCATTCATTCATTTAAATATCAACCAGGAGCCCTCTCACAGGTGGTGGTGCTTTGAGTaGATGTTTTTCAGCATAATT | + |
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Preference number: 4 (lower is better) Translates to: SFIHSFIHLNINQEPSHRWWCFE*MFFSII Trigger: AATTATGCTGAAAAACATGCACTCAAAGCACCACCA...CCTGTGAGAGGGCTCCTGGTTGATATTTAAATGAATGAATGAATGAATGAATGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR GCA 90 bp | AGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTTTACAATTCAATGCTCAGTGTTaGAAATATGTCTGTAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SKDLLLSKLSSKGIFILQFNAQC*KYVCKQ Trigger: TTGCTTACAGACATATTTGCAACACTGAGCATTGAA...TTGTAAAATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAAACTCTGGTGGTGCTTaGAGTGCATGTTTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPNSGGA*SACFSA Trigger: TGCTGAAAAACATGCACTCAAAGCACCACCAGAGTT...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCAGTGAATAAAGGTGAGTaGACAGGAGATCAAGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: GSTSLPLSFSHLRRCPTPVNKGE*TGDQVC Trigger: ACAGACTTGATCTCCTGTCAACTCACCTTTATTCAC...TGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GCCCTCTCACAGGGTTCCACCTCACTTCCCTTATCATTTTCTCATCTGAGACGGACACATCTCTGCAGATaGACACTGTTAACATCAATC | + |
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Preference number: 5 (lower is better) Translates to: ALSQGSTSLPLSFSHLRRTHLCR*TLLTSI Trigger: GATTGATGTTAACAGTGTCAATCTGCAGAGATGTGT...CCGTCTCAGATGAGAAAATGATAAGGGAAGTGAGGTGGAACCCTGTGAGAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GCACCACTTGTTGGGAGAAATCCACATGGTGACTGGACTGTACATCTGCTACATGTGAATAAAGGTGAGTaGACAGGAGATCAAGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: APLVGRNPHGDWTVHLLHVNKGE*TGDQVC Trigger: ACAGACTTGATCTCCTGTCAACTCACCTTTATTCAC...ATGTAGCAGATGTACAGTCCAGTCACCATGTGGATTTCTCCCAACAAGTGGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | TCACTTCCCTTATCATTTTCTCATCTGAGACGGTGCCCCACACCATTGTATTACACACATCTCTGCAGATaGACACTGTTAACATCAATC | + |
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Preference number: 5 (lower is better) Translates to: SLPLSFSHLRRCPTPLYYTHLCR*TLLTSI Trigger: GATTGATGTTAACAGTGTCAATCTGCAGAGATGTGT...GTAATACAATGGTGTGGGGCACCGTCTCAGATGAGAAAATGATAAGGGAAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | ACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAAGGGAATATTCATTCAAAGAAGAAACATATaGGCTAAGGCTCCAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: TNSKDLLLSKLSSKGIFIQRRNI*AKAPSP Trigger: TGGACTTGGAGCCTTAGCCAATATGTTTCTTCTTTG...AATGAATATTCCCTTGCTGCTGAGTTTACTCAAAAGGAGATCCTTGCTGTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACCAAAGAAGAAACATATaGGCTAAGGCTCCAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNQRRNI*AKAPSP Trigger: TGGACTTGGAGCCTTAGCCAATATGTTTCTTCTTTG...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | GACTGGACTGTACATCTGCTACATGTGCTAGGGACATTAAAGTTTAAAAGAAACACACATCTCTGCAGATaGACACTGTTAACATCAATC | + |
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Preference number: 5 (lower is better) Translates to: DWTVHLLHVLGTLKFKRNTHLCR*TLLTSI Trigger: GATTGATGTTAACAGTGTCAATCTGCAGAGATGTGT...GTTTCTTTTAAACTTTAATGTCCCTAGCACATGTAGCAGATGTACAGTCCAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS-3UTR CAA 90 bp | TCATTCATTCATTCATTCATTCATTTAAATATCAACCAGGAGCCCTCTCACAGGACACATCTCTGCAGATaGACACTGTTAACATCAATC | + |
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Preference number: 5 (lower is better) Translates to: SFIHSFIHLNINQEPSHRTHLCR*TLLTSI Trigger: GATTGATGTTAACAGTGTCAATCTGCAGAGATGTGT...CCTGTGAGAGGGCTCCTGGTTGATATTTAAATGAATGAATGAATGAATGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000176023.3 ENSMUST00000176147.9 ENSMUST00000177318.3 ENSMUST00000228586.2 |
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| CDS CAA 72 bp | TCCAGTGAGAAACATCATCATGTGAATAAAGGTGAGTaGACAGGAGATCAAGTCTGTAGGTTTAGGTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSEKHHHVNKGE*TGDQVCRFRSV Trigger: CACAGACCTAAACCTACAGACTTGATCTCCTGTCAACTCACCTTTATTCACATGATGATGTTTCTCACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000177318.3 ENSMUST00000226390.2 ENSMUST00000228586.2 |
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