Pregenerated sensors for VMN1R30 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095670Ensembl transcript IDs: ENSMUST00000078890.5, ENSMUST00000226334.2, ENSMUST00000227466.2, ENSMUST00000228577.2, ENSMUST00000228635.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTTaGGCCATCTCTCTAGCTCCAAGTAAATCATTTTTAAAAGAAGAG | + |
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Preference number: 1 (lower is better) Translates to: IKLMTSGSTDSALNL*AISLAPSKSFLKEE Trigger: CTCTTCTTTTAAAAATGATTTACTTGGAGCTAGAGAGATGGCTCAAAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR CCA 90 bp | AATATTTATAATTTGGACAAAATCCAATTACTGGAGCTACAAGCATaGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATG | + |
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Preference number: 1 (lower is better) Translates to: NIYNLDKIQLLELQA*YLKSSETPVPGDPM Trigger: CATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCATGCTTGTAGCTCCAGTAATTGGATTTTGTCCAAATTATAAATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTTGGGAATTAAACTCATaGCCTCTGGAAGCACGGACA | + |
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Preference number: 2 (lower is better) Translates to: WYLKSSETPVPGDPMISSWELNS*PLEART Trigger: TGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCA...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTAGTGCTCTTAATCTTTaGGCCATCTCTCTAGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: WYLKSSETPVPGDPMISSSALNL*AISLAP Trigger: TGGAGCTAGAGAGATGGCTCAAAGATTAAGAGCACT...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR-3UTR GCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTTTTGAGCATCAGGAATaGAGTTATGTAGACATATTG | + |
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Preference number: 2 (lower is better) Translates to: WYLKSSETPVPGDPMISSFEHQE*SYVDIL Trigger: CAATATGTCTACATAACTGCATTCCTGATGCTCAAA...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR TCA 72 bp | ATTACTGGAGCTACAAGCATGGTACCTAAAGTCATCTaGAACTCCAGTTCCAGGGGATCCCATGATCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: ITGATSMVPKVI*NSSSRGSHDLF Trigger: GAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCATGCTTGTAGCTCCAGTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| 3UTR TCA 72 bp | TGTAAGCCACCATGTGGTTTCTGGGAATTAAACTCATaGCCTCTGGAAGCACGGACAGTGCTCTTAATCTTT | + |
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Preference number: 3 (lower is better) Translates to: CKPPCGFWELNS*PLEARTVLLIF Trigger: AAAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAACCACATGGTGGCTTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR TCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTACACTCTCAGGTGCCTaGTGCTATGAAGATGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: WYLKSSETPVPGDPMISSTLSGA*CYEDAC Trigger: GCAGGCATCTTCATAGCATCAGGCACCTGAGAGTGT...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR CCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTGCCAACAGTGAGGTATaGGGACTGATTGTGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: WYLKSSETPVPGDPMISSANSEV*GLIVTA Trigger: GGCTGTCACAATCAGTCCCCATACCTCACTGTTGGC...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR TCA 90 bp | TTTCTGGGAATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTACACTCTCAGGTGCCTaGTGCTATGAAGATGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FLGIKLMTSGSTDSALNLTLSGA*CYEDAC Trigger: GCAGGCATCTTCATAGCATCAGGCACCTGAGAGTGT...AAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR CCA 90 bp | TTTCTGGGAATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTGCCAACAGTGAGGTATaGGGACTGATTGTGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: FLGIKLMTSGSTDSALNLANSEV*GLIVTA Trigger: GGCTGTCACAATCAGTCCCCATACCTCACTGTTGGC...AAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR TCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTTCAGTGACTCAAGTATaGCTGCAAGCCAATTATCCC | + |
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Preference number: 4 (lower is better) Translates to: WYLKSSETPVPGDPMISSSVTQV*LQANYP Trigger: GGGATAATTGGCTTGCAGTCATACTTGAGTCACTGA...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR TCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTATTCTCAATGTTCAGTaGCTCAAGTATGACTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: WYLKSSETPVPGDPMISSILNVQ*LKYDCK Trigger: CTTGCAGTCATACTTGAGTCACTGAACATTGAGAAT...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR TCA 90 bp | TTTCTGGGAATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTATTCTCAATGTTCAGTaGCTCAAGTATGACTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: FLGIKLMTSGSTDSALNLILNVQ*LKYDCK Trigger: CTTGCAGTCATACTTGAGTCACTGAACATTGAGAAT...AAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR GCA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTGATAATCACTATATATaGACTTGTGATCAGCATGAC | + |
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Preference number: 4 (lower is better) Translates to: WYLKSSETPVPGDPMISSDNHYI*TCDQHD Trigger: GTCATGCTGATCACAAGTGCATATATAGTGATTATC...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR GCA 90 bp | TTTCTGGGAATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTGATAATCACTATATATaGACTTGTGATCAGCATGAC | + |
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Preference number: 4 (lower is better) Translates to: FLGIKLMTSGSTDSALNLDNHYI*TCDQHD Trigger: GTCATGCTGATCACAAGTGCATATATAGTGATTATC...AAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR CAA 90 bp | TGGTACCTAAAGTCATCTGAAACTCCAGTTCCAGGGGATCCCATGATCTCTTCTTCGGATCCATGGGCTTaGATCTATGACCTAGGATTG | + |
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Preference number: 5 (lower is better) Translates to: WYLKSSETPVPGDPMISSSDPWA*IYDLGL Trigger: CAATCCTAGGTCATAGATCAAAGCCCATGGATCCGA...AGAAGAGATCATGGGATCCCCTGGAACTGGAGTTTCAGATGACTTTAGGTACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS TCA 90 bp | ATGACTGCAAGCCAATTATCCCCTCCCGCTAGCAAAAATAATATATaGGCAAATGTCAGTTGGCAGGAGGTCGGATCCATGGGCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: MTASQLSPPASKNNI*ANVSWQEVGSMGFD Trigger: ATCAAAGCCCATGGATCCGACCTCCTGCCAACTGACATTTGCTCATATATTATTTTTGCTAGCGGGAGGGGATAATTGGCTTGCAGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000078890.5 ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS-3UTR CAA 90 bp | TTTCTGGGAATTAAACTCATGACCTCTGGAAGCACGGACAGTGCTCTTAATCTTTCGGATCCATGGGCTTaGATCTATGACCTAGGATTG | + |
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Preference number: 5 (lower is better) Translates to: FLGIKLMTSGSTDSALNLSDPWA*IYDLGL Trigger: CAATCCTAGGTCATAGATCAAAGCCCATGGATCCGA...AAGATTAAGAGCACTGTCCGTGCTTCCAGAGGTCATGAGTTTAATTCCCAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS TCA 90 bp | GGCAGGAGGTCGGATCCATGGGCTTTGATCTATGACCTAGGATTGTaGAAGTATAGAAACAAAGGAGAAAAGTATTGGCTAGAATTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GRRSDPWALIYDLGL*KYRNKGEKYWLEFQ Trigger: TTGGAATTCTAGCCAATACTTTTCTCCTTTGTTTCTATACTTTCACAATCCTAGGTCATAGATCAAAGCCCATGGATCCGACCTCCTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000078890.5 ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS GCA 90 bp | ATGCCTGCAGTGCCTCTGGTGTCTGAACAAGATAATCACTATATATaGACTTGTGATCAGCATGACTCCTACAAGAAATACATCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: MPAVPLVSEQDNHYI*TCDQHDSYKKYISE Trigger: TTCAGAGATGTATTTCTTGTAGGAGTCATGCTGATCACAAGTGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCACTGCAGGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078890.5 ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS TCA 72 bp | GATAGGCAGTCACTACAAGCTTCTGAACAGTCAGGATaGCTGGGTCATACATCCATAACAAGAGTGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: DRQSLQASEQSG*LGHTSITRVRW Trigger: CCACCTCACTCTTGTTATGGATGTATGACCCAGTCATCCTGACTGTTCAGAAGCTTGTAGTGACTGCCTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078890.5 ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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| CDS GCA 72 bp | GTGCCTCTGGTGTCTGAACAAGATAATCACTATATATaGACTTGTGATCAGCATGACTCCTACAAGAAATAC | + |
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Preference number: 6 (lower is better) Translates to: VPLVSEQDNHYI*TCDQHDSYKKY Trigger: GTATTTCTTGTAGGAGTCATGCTGATCACAAGTGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078890.5 ENSMUST00000226334.2 ENSMUST00000227466.2 ENSMUST00000228577.2 ENSMUST00000228635.2 |
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