RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115705

Ensembl transcript IDs: ENSMUST00000226813.2, ENSMUST00000227805.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAAGGCTGGCTCACTTGGGGAAAAACATTGCTCTGCCCTGCAGATaGCCAACACAAAGTGATCTCAAAGCAATCTTTATGGGTCCTTTG +
Preference number: 1 (lower is better)
Translates to: PRLAHLGKNIALPCR*PTQSDLKAIFMGPL
Trigger: CAAAGGACCCATAAAGATTGCTTTGAGATCACTTTGTGTTGGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAGTGAGCCAGCCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 90 bp ACACAAAAGAAAGAAGGAAGCAAACTGGGCTGGAAGGTAAACTTCTaGCCCATCCTACTCCATGTATTTTCATTGCCAGGTAAGGTTCCC +
Preference number: 1 (lower is better)
Translates to: TQKKEGSKLGWKVNF*PILLHVFSLPGKVP
Trigger: GGGAACCTTACCTGGCAATGAAAATACATGGAGTAGGATGGGGCAGAAGTTTACCTTCCAGCCCAGTTTGCTTCCTTCTTTCTTTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 90 bp GAAAGTATAACGTGCCTGTTGGGGGTGAACAACAGGGTTCAGACTTaGTGTCTGAGACTGGAAATTTACCACACAAAAGAAAGAAGGAAG +
Preference number: 1 (lower is better)
Translates to: ESITCLLGVNNRVQT*CLRLEIYHTKERRK
Trigger: CTTCCTTCTTTCTTTTGTGTGGTAAATTTCCAGTCTCAGACACCAAGTCTGAACCCTGTTGTTCACCCCCAACAGGCACGTTATACTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 90 bp CTGAAGAAAAGCAGCCAAGGTTGTCTCCTGGCCACAATGTGTACATaGACACACCTCCTTTGTCTGTGCACATGTATACAAGAATACATA +
Preference number: 1 (lower is better)
Translates to: LKKSSQGCLLATMCT*THLLCLCTCIQEYI
Trigger: TATGTATTCTTGTATACATGTGCACAGACAAAGGAGGTGTGTTCATGTACACATTGTGGCCAGGAGACAACCTTGGCTGCTTTTCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 90 bp AGCCATTGCCAACACTGCTTGGGTGGTCAAGAACCTGACACTAGATaGGCCAGGAGTGAAGAAGAAAATCAAACATGTGTTTTTGTAAAA +
Preference number: 1 (lower is better)
Translates to: SHCQHCLGGQEPDTR*ARSEEENQTCVFVK
Trigger: TTTTACAAAAACACATGTTTGATTTTCTTCTTCACTCCTGGCTCATCTAGTGTCAGGTTCTTGACCACCCAAGCAGTGTTGGCAATGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 90 bp AAGTACAGAAGAGACAAACTATCAGAGCATAAGATGAATGGTATCTaGAGAAAAGCAGCCAAGGTTGTCTCCTGGCCACAATGTGTACAT +
Preference number: 1 (lower is better)
Translates to: KYRRDKLSEHKMNGI*RKAAKVVSWPQCVH
Trigger: ATGTACACATTGTGGCCAGGAGACAACCTTGGCTGCTTTTCTTCAGATACCATTCATCTTATGCTCTGATAGTTTGTCTCTTCTGTACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 90 bp CACCCATATTTATCGTGTCATCTGGAGAGGGCAGTTTTGACTTTATaGTTGTTAGAAAGTGGTACTTTCAAATGGAAATGTGAACTTCCC +
Preference number: 1 (lower is better)
Translates to: HPYLSCHLERAVLTL*LLESGTFKWKCELP
Trigger: GGGAAGTTCACATTTCCATTTGAAAGTACCACTTTCTAACAACCATAAAGTCAAAACTGCCCTCTCCAGATGACACGATAAATATGGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 90 bp CTTGGGGAAAAACATTGCTCTGCCCTGCAGATGACCAACACAAAGTaGTCTCAAAGCAATCTTTATGGGTCCTTTGCATATATATATATA +
Preference number: 1 (lower is better)
Translates to: LGEKHCSALQMTNTK*SQSNLYGSFAYIYI
Trigger: TATATATATATATGCAAAGGACCCATAAAGATTGCTTTGAGATCACTTTGTGTTGGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 90 bp TATATACCAGTGGACAATGGATTTTGCTCTTGCATTCATTTGCCTTaGTTACTTCACAGATCTTTGCTTGTTGTGACTTCACATAGAAAA +
Preference number: 1 (lower is better)
Translates to: YIPVDNGFCSCIHLP*LLHRSLLVVTSHRK
Trigger: TTTTCTATGTGAAGTCACAACAAGCAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 90 bp GATGTTTGGAAAGAGTATATGTATATACCAGTGGACAATGGATTTTaGTCTTGCATTCATTTGCCTTGCTTACTTCACAGATCTTTGCTT +
Preference number: 1 (lower is better)
Translates to: DVWKEYMYIPVDNGF*SCIHLPCLLHRSLL
Trigger: AAGCAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATACATATACTCTTTCCAAACATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 90 bp TTGAGAGGAAATGTGATGTTTGGAAAGAGTATATGTATATACCAGTaGACAATGGATTTTGCTCTTGCATTCATTTGCCTTGCTTACTTC +
Preference number: 1 (lower is better)
Translates to: LRGNVMFGKSICIYQ*TMDFALAFICLAYF
Trigger: GAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATACATATACTCTTTCCAAACATCACATTTCCTCTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCCTTGGGGAAAAACATTaGTCTGCCCTGCAGATGACC +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTLGEKH*SALQMT
Trigger: GGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAG...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCATAGCACCTTCTTCCTaGATCTGCAGACTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTIAPSS*ICRLRR
Trigger: CCTCCTGAGTCTGCAGATGCAGGAAGAAGGTGCTAT...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCTCCTCCATCAGCAGATaGGAAGAGCTACAAAGACCC +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTSSISR*EELQRP
Trigger: GGGTCTTTGTAGCTCTTCCCATCTGCTGATGGAGGA...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCCTGGCTTGCTTCCTCTaGCTTCCTTCACCTCTTTTG +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTLACFL*LPSPLL
Trigger: CAAAAGAGGTGAAGGAAGCCAGAGGAAGCAAGCCAG...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCCCTGGTGTTTTCTTCTaGATGGAGCTACTGCTACTG +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTPGVFF*MELLLL
Trigger: CAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGG...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGCAAGGCTGGCTCACTTaGGGAAAAACATTGCTCTGC +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLQGWLT*GKTLLC
Trigger: GCAGAGCAATGTTTTTCCCCAAGTGAGCCAGCCTTG...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCACCCACCTGGGTCTTTaGAAGACATCTAAGCAGAAT +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTTHLGL*KTSKQN
Trigger: ATTCTGCTTAGATGTCTTTCAAAGACCCAGGTGGGT...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGCTAAGAGACTGTGGTTaGATTCACAGGGACTGCACA +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLLRDCG*IHRDCT
Trigger: TGTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAG...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp AGTCCCATATACGAGAAATGCAAGAGGCTTCCAAGACCCAACGGGGCTGACATTGCCAAGGTTGTCTCCTaGCCACAATGTGTACATGAA +
Preference number: 2 (lower is better)
Translates to: SPIYEKCKRLPRPNGADIAKVVS*PQCVHE
Trigger: TTCATGTACACATTGTGGCCAGGAGACAACCTTGGC...AATGTCAGCCCCGTTGGGTCTTGGAAGCCTCTTGCATTTCTCGTATATGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCAACATCATGGAAGAGTaGTACTTACTGGCTTGCTTC +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTNIMEE*YLLACF
Trigger: GAAGCAAGCCAGTAAGTATCACTCTTCCATGATGTT...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCCTTGGGGAAAAACATTaGTCTGCCCTGCAGATGACC +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLLGEKH*SALQMT
Trigger: GGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAG...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCATAGCACCTTCTTCCTaGATCTGCAGACTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLIAPSS*ICRLRR
Trigger: CCTCCTGAGTCTGCAGATGCAGGAAGAAGGTGCTAT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAGGGATGGAAGAACGTaGGAGGGAGAGGGAGTGAAG +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELRDGRT*EGEGVK
Trigger: CTTCACTCCCTCTCCCTCCCACGTTCTTCCATCCCT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTAGTGAGACAAGGGGCTaGGAAGAGCAAGAGGAGGTA +
Preference number: 2 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFSETRG*EEQEEV
Trigger: TACCTCCTCTTGCTCTTCCCAGCCCCTTGTCTCACT...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTGACACCACCCCAAATTaGCTGGGCCTTCTGCCATTG +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELDTTPN*LGLLPL
Trigger: CAATGGCAGAAGGCCCAGCCAATTTGGGGTGGTGTC...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCATGTATGATGTGGTTATaGGGGAAGAGCTGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPCMMWL*GKSWVG
Trigger: CCCCACCCAGCTCTTCCCTCATAACCACATCATACA...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGAAACAGTTTTCAGAATaGCCACACACACACACACAC +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLKQFSE*PHTHTH
Trigger: GTGTGTGTGTGTGTGTGGGCATTCTGAAAACTGTTT...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCGCTCTTGCATTCATTTaGCTTGCTTACTTCACAGAT +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTALAFI*LAYFTD
Trigger: ATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGC...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCGATCAGGAAATTGTTTaGAGATATGTAGCAGGGAGA +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTDQEIV*RYVAGR
Trigger: TCTCCCTGCTACATATCTCCAAACAATTTCCTGATC...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp AGTGATCACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCGCCACAATGTGTACATaGACACACCTCCTTTGTCTG +
Preference number: 2 (lower is better)
Translates to: SDHRREVEEIGESLSGRLATMCT*THLLCL
Trigger: CAGACAAAGGAGGTGTGTTCATGTACACATTGTGGC...GAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTGATCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTGCCACAATGTGTACATaGACACACCTCCTTTGTCTG +
Preference number: 2 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFATMCT*THLLCL
Trigger: CAGACAAAGGAGGTGTGTTCATGTACACATTGTGGC...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTATGTATGATGTGGTTATaGGGGAAGAGCTGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLCMMWL*GKSWVG
Trigger: CCCCACCCAGCTCTTCCCTCATAACCACATCATACA...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCGATAATTTTACCAACTaGACATCGGGTATATGGCTT +
Preference number: 2 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTDNFTN*TSGIWL
Trigger: AAGCCATATACCCGATGTTCAGTTGGTAAAATTATC...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTGGTGTAGAAACAGCTaGGCTCCAAGTTTCCCAGCT +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELWCRNS*APSFPA
Trigger: AGCTGGGAAACTTGGAGCTCAGCTGTTTCTACACCA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTATCCACTTCTGTATTTaGCAGGCACTGGCATGGCTT +
Preference number: 2 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFIHFCI*QALAWL
Trigger: AAGCCATGCCAGTGCCTGGCAAATACAGAAGTGGAT...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp AAGACCCACAGTAGGAAAAACATGCAGAGAGTGAGAGACTTTGGGCCTCTCAGTGTATTTGCCAGGCACTaGCATGGCTTTTGTATTCTT +
Preference number: 2 (lower is better)
Translates to: KTHSRKNMQRVRDFGPLSVFARH*HGFCIL
Trigger: AAGAATACAAAAGCCATGCCAGTGCCTGGCAAATAC...ACTGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTTTCCTACTGTGGGTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGGATCAGGAAATTGTTTaGAGATATGTAGCAGGGAGA +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLDQEIV*RYVAGR
Trigger: TCTCCCTGCTACATATCTCCAAACAATTTCCTGATC...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTTATGGGAGGCGATGGTaGAGAAATACAGAGGATCAG +
Preference number: 2 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFYGRRW*RNTEDQ
Trigger: CTGATCCTCTGTATTTCTCCACCATCGCCTCCCATA...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAGGATTAGTGGAGCCTaGTGTTTTCTTCTGCATGGA +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLRISGA*CFLLHG
Trigger: TCCATGCAGAAGAAAACACCAGGCTCCACTAATCCT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCACAGATATACCACTATaGGTCCCAGAGGACACTCAA +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLTDIPL*VPEDTQ
Trigger: TTGAGTGTCCTCTGGGACCCATAGTGGTATATCTGT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp CATATTGTTGTTCTACCTATAGGGTTGCAGACTCCATTTAGCTCCTaGTGTGTTTTCTTTAGCTTCTCCATTTCAGGGCCCCTGTGTTCC +
Preference number: 2 (lower is better)
Translates to: HIVVLPIGLQTPFSS*CVFFSFSISGPLCS
Trigger: GGAACACAGGGGCCCTGAAATGGAGAAGCTAAAGAAAACACACAAGGAGCTAAATGGAGTCTGCAACCCTATAGGTAGAACAACAATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCGGCAAGTGCTCCATCTaGATATTTGCTTGGGTATAT +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLGKCSI*IFAWVY
Trigger: ATATACCCAAGCAAATATTCAGATGGAGCACTTGCC...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTCCCATATACGAGAAATaGAAGAGGCTTCCAAGACCC +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELPIYEK*KRLPRP
Trigger: GGGTCTTGGAAGCCTCTTGCATTTCTCGTATATGGG...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCCTTCTGCTGGGCTCTaGTCTCTTGCCAATACCCAC +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIPSAGL*SLANTH
Trigger: GTGGGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCAGCCAAGGTTGTCTCCTaGCCACAATGTGTACATGAA +
Preference number: 2 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPAKVVS*PQCVHE
Trigger: TTCATGTACACATTGTGGCCAGGAGACAACCTTGGC...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCAGGGATGGAAGAACGTaGGAGGGAGAGGGAGTGAAG +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIRDGRT*EGEGVK
Trigger: CTTCACTCCCTCTCCCTCCCACGTTCTTCCATCCCT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGTTTGGTGATGTTAAGTaGACTGAACTGCAGATAACA +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLFGDVK*TELQIT
Trigger: TGTTATCTGCAGTTCAGTCCACTTAACATCACCAAA...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCGACACCACCCCAAATTaGCTGGGCCTTCTGCCATTG +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIDTTPN*LGLLPL
Trigger: CAATGGCAGAAGGCCCAGCCAATTTGGGGTGGTGTC...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp AGAAAGTATAACGTGCCTGTTGGGGGTGAACAACAGGGTTCAGACTaGGTGTCTGAGACTGGAAATTTACCACACAAAAGAAAGAAGGAA +
Preference number: 2 (lower is better)
Translates to: RKYNVPVGGEQQGSD*VSETGNLPHKRKKE
Trigger: TTCCTTCTTTCTTTTGTGTGGTAAATTTCCAGTCTCAGACACCAAGTCTGAACCCTGTTGTTCACCCCCAACAGGCACGTTATACTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp TGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTaGCTCTTGGTAGTACAAACTTGTCCATTCACTATGGAATCAGTG +
Preference number: 2 (lower is better)
Translates to: WHHRQAKMWNKNSHV*LLVVQTCPFTMESV
Trigger: CACTGATTCCATAGTGAATGGACAAGTTTGTACTACCAAGAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp GAACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTaGCCAATACCCACTTCTACTGTCACATATAAAGTAAGAAATCAA +
Preference number: 2 (lower is better)
Translates to: EPFLSLFTLLLGSAL*PIPTSTVTYKVRNQ
Trigger: TTGATTTCTTACTTTATATGTGACAGTAGAAGTGGGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCGGGAAGTTGAAGCATTaGAGAACCACAATTACAGTA +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLGKLKH*RTTITV
Trigger: TACTGTAATTGTGGTTCTTCAATGCTTCAACTTCCC...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTACTAAGAGACTGTGGTTaGATTCACAGGGACTGCACA +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLLRDCG*IHRDCT
Trigger: TGTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAG...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGAGAAGAGAATTGATGTaGAAAGAGCAATTATGCTGT +
Preference number: 2 (lower is better)
Translates to: SSCICRLRRISGAWCFLLRRELM*KEQLCC
Trigger: ACAGCATAATTGCTCTTTCCACATCAATTCTCTTCT...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp AAGACCCACAGTAGGAAAAACATGCAGAGAGTGAGAGACTTTGGGCCTCTCAGTTTAAATTGTGGGGTATaGATGAACACTAGTGATCAC +
Preference number: 2 (lower is better)
Translates to: KTHSRKNMQRVRDFGPLSLNCGV*MNTSDH
Trigger: GTGATCACTAGTGTTCATCCATACCCCACAATTTAA...ACTGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTTTCCTACTGTGGGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTATGTAGCAGGGAGATaGGAAAATAGGGGTAGCCAT +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELYVAGR*ENRGSH
Trigger: ATGGCTACCCCTATTTTCCCATCTCCCTGCTACATA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTGAGAGTGAGAGACTTTaGGCCTCTCAGTCCTATATT +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELESERL*ASQSYI
Trigger: AATATAGGACTGAGAGGCCCAAAGTCTCTCACTCTC...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAGAGTTTCCCAAGAATaGAGTGGATTAATGTTAGCG +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLRVSQE*SGLMLA
Trigger: CGCTAACATTAATCCACTCCATTCTTGGGAAACTCT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCAGTGTTTTCTTCTGCATaGAGCTACTGCTACTGGTTC +
Preference number: 2 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPVFSSA*SYCYWF
Trigger: GAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACAC...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAAGCACTCACCCACCTaGGTCTTTGAAAGACATCTA +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELKHSPT*VFERHL
Trigger: TAGATGTCTTTCAAAGACCCAGGTGGGTGAGTGCTT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTAAGATGAATGGTATCTaGAGAAAAGCAGCCAAGGTT +
Preference number: 2 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFKMNGI*RKAAKV
Trigger: AACCTTGGCTGCTTTTCTTCAGATACCATTCATCTT...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAGACATTTCCGCAACTaGAGCTCCTTGCTTTTTGAT +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELRHFRN*SSLLFD
Trigger: ATCAAAAAGCAAGGAGCTTCAGTTGCGGAAATGTCT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCTGGTGTAGAAACAGCTaGGCTCCAAGTTTCCCAGCT +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIWCRNS*APSFPA
Trigger: AGCTGGGAAACTTGGAGCTCAGCTGTTTCTACACCA...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCACTTTTCTTTTCTCCTaGCTCTGGTCGGTGGTGTGC +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKITFLFS*LWSVVC
Trigger: GCACACCACCGACCAGAGGCAGGAGAAAAGAAAAGT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTAGTGTTTTCTTCTGCATaGAGCTACTGCTACTGGTTC +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLVFSSA*SYCYWF
Trigger: GAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACAC...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp CTCTTGGAGTACTGGTTAGTTCATATTGTTGTTCTACCTATAGGGTaGCAGACTCCATTTAGCTCCTTGTGTGTTTTCTTTAGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: LLEYWLVHIVVLPIG*QTPFSSLCVFFSFS
Trigger: GGAGAAGCTAAAGAAAACACACAAGGAGCTAAATGGAGTCTGCAACCCTATAGGTAGAACAACAATATGAACTAACCAGTACTCCAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCAAAACATGCAGAGAGTaGGAGACTTTGGGCCTCTCA +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIKTCRE*ETLGLS
Trigger: TGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCATCCACTTCTGTATTTaGCAGGCACTGGCATGGCTT +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIIHFCI*QALAWL
Trigger: AAGCCATGCCAGTGCCTGGCAAATACAGAAGTGGAT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGGGGGCATATAAAGTTTaGAAGACCAAGGGTCCTCTC +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQGAYKV*KTKGPL
Trigger: GAGAGGACCCTTGGTCTTGCAAACTTTATATGCCCC...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCCTGGTGTTTTCTTCTaGATGGAGCTACTGCTACTG +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIPGVFF*MELLLL
Trigger: CAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAATGGATTTTGCTCTTaGATTCATTTGCCTTGCTTA +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLNGFCS*IHLPCL
Trigger: TAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCCTCTCAGTCCTATATTaGAGGTCTCCATTAATTTAT +
Preference number: 2 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLLSVLY*RSPLIY
Trigger: ATAAATTAATGGAGACCTCCAATATAGGACTGAGAG...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp AGCTTTCTGGTGAAAGGGCATGTAATGGTTCACTTGAGTGGATGCTaGAGAGGAAATGTGATGTTTGGAAAGAGTATATGTATATACCAG +
Preference number: 2 (lower is better)
Translates to: SFLVKGHVMVHLSGC*RGNVMFGKSICIYQ
Trigger: CTGGTATATACATATACTCTTTCCAAACATCACATTTCCTCTCAAGCATCCACTCAAGTGAACCATTACATGCCCTTTCACCAGAAAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTAAAGATGAATGGTATCTaGAGAAAAGCAGCCAAGGTT +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLKMNGI*RKAAKV
Trigger: AACCTTGGCTGCTTTTCTTCAGATACCATTCATCTT...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTACTGGAAACAGGCTTATaGAAGGTTGTTTTGCTAAGA +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLLETGL*KVVLLR
Trigger: TCTTAGCAAAACAACCTTTCATAAGCCTGTTTCCAG...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCTATGTAGCAGGGAGATaGGAAAATAGGGGTAGCCAT +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIYVAGR*ENRGSH
Trigger: ATGGCTACCCCTATTTTCCCATCTCCCTGCTACATA...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCGAGAGTGAGAGACTTTaGGCCTCTCAGTCCTATATT +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIESERL*ASQSYI
Trigger: AATATAGGACTGAGAGGCCCAAAGTCTCTCACTCTC...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCAAAACTAGACAGTCATTaGTCTTCCTTCTTGATCTTC +
Preference number: 2 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPKLDSH*SSFLIF
Trigger: GAAGATCAAGAAGGAAGACCAATGACTGTCTAGTTT...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTATGCGGCATATGAAGTaGAAATTTCTGTTTTCGTTG +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELMRHMK*KFLFSL
Trigger: CAACGAAAACAGAAATTTCCACTTCATATGCCGCAT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp CTTATGAAAGGTTGTTTTGCTAAGAACAGACACATGATGTTTTTCTaGAAGCTTTCTGGTGAAAGGGCATGTAATGGTTCACTTGAGTGG +
Preference number: 2 (lower is better)
Translates to: LMKGCFAKNRHMMFF*KLSGERACNGSLEW
Trigger: CCACTCAAGTGAACCATTACATGCCCTTTCACCAGAAAGCTTCAAGAAAAACATCATGTGTCTGTTCTTAGCAAAACAACCTTTCATAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp ATCCCTCTACACCCATATTTATCGTGTCATCTGGAGAGGGCAGTTTaGACTTTATGGTTGTTAGAAAGTGGTACTTTCAAATGGAAATGT +
Preference number: 2 (lower is better)
Translates to: IPLHPYLSCHLERAV*TLWLLESGTFKWKC
Trigger: ACATTTCCATTTGAAAGTACCACTTTCTAACAACCATAAAGTCAAAACTGCCCTCTCCAGATGACACGATAAATATGGGTGTAGAGGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCGGCAAGTGCTCCATCTaGATATTTGCTTGGGTATAT +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIGKCSI*IFAWVY
Trigger: ATATACCCAAGCAAATATTCAGATGGAGCACTTGCC...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGAGACATTTCCGCAACTaGAGCTCCTTGCTTTTTGAT +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQRHFRN*SSLLFD
Trigger: ATCAAAAAGCAAGGAGCTTCAGTTGCGGAAATGTCT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCTCCATGTATTTTCATTaGCAGGTAAGGTTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKISMYFH*QVRFPE
Trigger: CTCTGGGAACCTTACCTGGCAATGAAAATACATGGA...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGTCCATGTATTTTCATTaGCAGGTAAGGTTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQSMYFH*QVRFPE
Trigger: CTCTGGGAACCTTACCTGGCAATGAAAATACATGGA...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTATGCATTCATTTGCCTTaGTTACTTCACAGATCTTTG +
Preference number: 2 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLCIHLP*LLHRSL
Trigger: CAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCA...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTTTCACTTGGTAGAGTaGATAGAAGAATTGTGTATG +
Preference number: 2 (lower is better)
Translates to: IGGTQFSSHPITFYDTELFHLVE*IEELCM
Trigger: CATACACAATTCTTCTATGCACTCTACCAAGTGAAA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGGTATTTGCCAGGCACTaGCATGGCTTTTGTATTCTT +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQVFARH*HGFCIL
Trigger: AAGAATACAAAAGCCATGCCAGTGCCTGGCAAATAC...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp ATGCGGCATATGAAGTGGAAATTTCTGTTTTCGTTGGAGACTCAGTaGTGTCATGTAATATTTTTCTGGAAACAGGCTTATGAAAGGTTG +
Preference number: 2 (lower is better)
Translates to: MRHMKWKFLFSLETQ*CHVIFFWKQAYERL
Trigger: CAACCTTTCATAAGCCTGTTTCCAGAAAAATATTACATGACACAACTGAGTCTCCAACGAAAACAGAAATTTCCACTTCATATGCCGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR TCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCTTAAAGCCATATTTCTaGGGACATCAGTTCCACAAC +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKILKPYF*GHQFHN
Trigger: GTTGTGGAACTGATGTCCTCAGAAATATGGCTTTAA...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGAGGAAGGCCAAAGTATaGATGTTTCAGTCCTACTTA +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQRKAKV*MFQSYL
Trigger: TAAGTAGGACTGAAACATCCATACTTTGGCCTTCCT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 90 bp TATATGTATATACCAGTGGACAATGGATTTTGCTCTTGCATTCATTaGCCTTGCTTACTTCACAGATCTTTGCTTGTTGTGACTTCACAT +
Preference number: 2 (lower is better)
Translates to: YMYIPVDNGFCSCIH*PCLLHRSLLVVTSH
Trigger: ATGTGAAGTCACAACAAGCAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATACATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGTTAAATTGTGGGGTATaGATGAACACTAGTGATCAC +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQLNCGV*MNTSDH
Trigger: GTGATCACTAGTGTTCATCCATACCCCACAATTTAA...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCATGCGGCATATGAAGTaGAAATTTCTGTTTTCGTTG +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIMRHMK*KFLFSL
Trigger: CAACGAAAACAGAAATTTCCACTTCATATGCCGCAT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR GCA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCAATGGATTTTGCTCTTaGATTCATTTGCCTTGCTTA +
Preference number: 2 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKINGFCS*IHLPCL
Trigger: TAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCACCCACTCCCACTTCTaGGCTCTGGCATTTCCCTGT +
Preference number: 3 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTTHSHF*ALAFPC
Trigger: ACAGGGAAATGCCAGAGCCAAGAAGTGGGAGTGGGT...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCGCTAAGAGACTGTGGTaGCATTCACAGGGACTGCAC +
Preference number: 3 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTAKRLW*HSQGLH
Trigger: GTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAGC...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp TCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTaGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGT +
Preference number: 3 (lower is better)
Translates to: SCICRLRRISGA*CFLLHGATATG
Trigger: ACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp AAGACCCACAGTAGGAAAAACATGCAGAGAGTGAGAGACTTTGGGCCTCTCAGTCCAAGGCTGGCTCACTaGGGGAAAAACATTGCTCTG +
Preference number: 3 (lower is better)
Translates to: KTHSRKNMQRVRDFGPLSPRLAH*GKNIAL
Trigger: CAGAGCAATGTTTTTCCCCAAGTGAGCCAGCCTTGG...ACTGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTTTCCTACTGTGGGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp CTCCAAGGCTGGCTCACTTGGGGAAAAACATTGCTCTaGCCTGCAGATGACCAACACAAAGTGATCTCAAAG +
Preference number: 3 (lower is better)
Translates to: LQGWLTWGKTLL*PADDQHKVISK
Trigger: CTTTGAGATCACTTTGTGTTGGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAGTGAGCCAGCCTTGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp GATATGAACCTTTCCTGTCTCTATTCACCCTTCTGCTaGGCTCTGCTCTCTTGCCAATACCCACTTCTACTG +
Preference number: 3 (lower is better)
Translates to: DMNLSCLYSPFC*ALLSCQYPLLL
Trigger: CAGTAGAAGTGGGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGTTCATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGGGATCAGGAAATTGTTaGGAGATATGTAGCAGGGAG +
Preference number: 3 (lower is better)
Translates to: SSCICRLRRISGAWCFLLGSGNC*EICSRE
Trigger: CTCCCTGCTACATATCTCCAAACAATTTCCTGATCC...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACATCCACTTCTGTATTaGCCAGGCACTGGCATGGCT +
Preference number: 3 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPHPLLY*PGTGMA
Trigger: AGCCATGCCAGTGCCTGGCAAATACAGAAGTGGATG...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTACTTGGGGAAAAACATaGCTCTGCCCTGCAGATGAC +
Preference number: 3 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFTWGKT*LCPADD
Trigger: GTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAGT...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTGCTAAGAGACTGTGGTaGCATTCACAGGGACTGCAC +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELAKRLW*HSQGLH
Trigger: GTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAGC...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCAAGAACTCTCATGTGTaGCTCTTGGTAGTACAAACT +
Preference number: 3 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTKNSHV*LLVVQT
Trigger: AGTTTGTACTACCAAGAGCAACACATGAGAGTTCTT...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp CAAAGAACTTCTCGTGATAATATAGCACCTTCTTCCTaGATCTGCAGACTCAGGAGGATTAGTGGAGCCTGG +
Preference number: 3 (lower is better)
Translates to: QRTSRDNIAPSS*ICRLRRISGAW
Trigger: CCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGAAGGTGCTATATTATCACGAGAAGTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp CATGATATGAACCTTTCCTGTCTCTATTCACCCTTCTaGTGGGCTCTGCTCTCTTGCCAATACCCACTTCTA +
Preference number: 3 (lower is better)
Translates to: HDMNLSCLYSPF*WALLSCQYPLL
Trigger: TAGAAGTGGGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGTTCATATCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp ACGTGCCTGTTGGGGGTGAACAACAGGGTTCAGACTTaGTGTCTGAGACTGGAAATTTACCACACAAAAGAA +
Preference number: 3 (lower is better)
Translates to: TCLLGVNNRVQT*CLRLEIYHTKE
Trigger: TTCTTTTGTGTGGTAAATTTCCAGTCTCAGACACCAAGTCTGAACCCTGTTGTTCACCCCCAACAGGCACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTACATCCACTTCTGTATTaGCCAGGCACTGGCATGGCT +
Preference number: 3 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLHPLLY*PGTGMA
Trigger: AGCCATGCCAGTGCCTGGCAAATACAGAAGTGGATG...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCCATGTAATGGTTCACTaGAGTGGATGCTTGAGAGGA +
Preference number: 3 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLHVMVH*SGCLRG
Trigger: TCCTCTCAAGCATCCACTCAAGTGAACCATTACATG...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp AAAGAAGGAAGCAAACTGGGCTGGAAGGTAAACTTCTaGCCCATCCTACTCCATGTATTTTCATTGCCAGGT +
Preference number: 3 (lower is better)
Translates to: KEGSKLGWKVNF*PILLHVFSLPG
Trigger: ACCTGGCAATGAAAATACATGGAGTAGGATGGGGCAGAAGTTTACCTTCCAGCCCAGTTTGCTTCCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCATGAACACACCTCCTTaGTCTGTGCACATGTATACA +
Preference number: 3 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLMNTPP*SVHMYT
Trigger: TGTATACATGTGCACAGACAAAGGAGGTGTGTTCAT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCCAGTTCCACAACTCATaGAACACAGAGAAATTGAGG +
Preference number: 3 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLQFHNS*NTEKLR
Trigger: CCTCAATTTCTCTGTGTTCAATGAGTTGTGGAACTG...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACAACAGGGTTCAGACTaGGTGTCTGAGACTGGAAAT +
Preference number: 3 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPQQGSD*VSETGN
Trigger: ATTTCCAGTCTCAGACACCAAGTCTGAACCCTGTTG...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp GCTCACTTGGGGAAAAACATTGCTCTGCCCTGCAGATaGCCAACACAAAGTGATCTCAAAGCAATCTTTATG +
Preference number: 3 (lower is better)
Translates to: AHLGKNIALPCR*PTQSDLKAIFM
Trigger: CATAAAGATTGCTTTGAGATCACTTTGTGTTGGTCATCTGCAGGGCAGAGCAATGTTTTTCCCCAAGTGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp CAACACTGCTTGGGTGGTCAAGAACCTGACACTAGATaGGCCAGGAGTGAAGAAGAAAATCAAACATGTGTT +
Preference number: 3 (lower is better)
Translates to: QHCLGGQEPDTR*ARSEEENQTCV
Trigger: AACACATGTTTGATTTTCTTCTTCACTCCTGGCTCATCTAGTGTCAGGTTCTTGACCACCCAAGCAGTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp ACGCGCCTTCAGTCATTCCAGTTTTTGTACAGCATATaGCTGCAAATGATGGGGGTCATGCTTATAATGAGC +
Preference number: 3 (lower is better)
Translates to: TRLQSFQFLYSI*LQMMGVMLIMS
Trigger: GCTCATTATAAGCATGACCCCCATCATTTGCAGTCATATGCTGTACAAAAACTGGAATGACTGAAGGCGCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGGAAAAGCAGCCAAGGTaGTCTCCTGGCCACAATGTG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQEKQPR*SPGHNV
Trigger: CACATTGTGGCCAGGAGACAACCTTGGCTGCTTTTC...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp AAGACCCACAGTAGGAAAAACATGCAGAGAGTGAGAGACTTTGGGCCTCTCAGTGTATCTCTGTTAAAGTaGTTTGCACCTATGTCTTCA +
Preference number: 3 (lower is better)
Translates to: KTHSRKNMQRVRDFGPLSVSLLK*FAPMSS
Trigger: TGAAGACATAGGTGCAAACAACTTTAACAGAGATAC...ACTGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTTTCCTACTGTGGGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCGAAACTAGACAGTCATaGGTCTTCCTTCTTGATCTT +
Preference number: 3 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLETRQS*VFLLDL
Trigger: AAGATCAAGAAGGAAGACCAATGACTGTCTAGTTTC...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAAAGAGGCCATTATATaGCATAGCTTGCATTCTCCA +
Preference number: 3 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLKEAII*HSLHSP
Trigger: TGGAGAATGCAAGCTATGCAATATAATGGCCTCTTT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCAGCTCCATCTGAATATTaGCTTGGGTATATACACGCG +
Preference number: 3 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPAPSEY*LGYIHA
Trigger: CGCGTGTATATACCCAAGCAAATATTCAGATGGAGC...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp AATATCATAATTGAACAATGTCATACTGTCAGTGTATaGTGTGGTTATGAGGGAAGAGCTGGGTGGGGCTGG +
Preference number: 3 (lower is better)
Translates to: NIIIEQCHTVSV*CGYEGRAGWGW
Trigger: CCAGCCCCACCCAGCTCTTCCCTCATAACCACATCATACACTGACAGTATGACATTGTTCAATTATGATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp CTGGTCGGTGGTGTGCTAGAAGGGAAGTTGAAGCATTaGAGAACCACAATTACAGTAGGTTTTGAAAACTCT +
Preference number: 3 (lower is better)
Translates to: LVGGVLEGKLKH*RTTITVGFENS
Trigger: AGAGTTTTCAAAACCTACTGTAATTGTGGTTCTTCAATGCTTCAACTTCCCTTCTAGCACACCACCGACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp GTAATTTCCACAGGACAGGATCTTAGAGGCAGGAGCTaGTGTAAAACATCATGGAAGAGTGATACTTACTGG +
Preference number: 3 (lower is better)
Translates to: VISTGQDLRGRS*CKTSWKSDTYW
Trigger: CCAGTAAGTATCACTCTTCCATGATGTTTTACATCAGCTCCTGCCTCTAAGATCCTGTCCTGTGGAAATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp ACACAATACAATGGATACATACAAGCTAAGAGACTGTaGTTGCATTCACAGGGACTGCACAGATTTCACCTG +
Preference number: 3 (lower is better)
Translates to: TQYNGYIQAKRL*LHSQGLHRFHL
Trigger: CAGGTGAAATCTGTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAGCTTGTATGTATCCATTGTATTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp CTTTCTGGTGAAAGGGCATGTAATGGTTCACTTGAGTaGATGCTTGAGAGGAAATGTGATGTTTGGAAAGAG +
Preference number: 3 (lower is better)
Translates to: LSGERACNGSLE*MLERKCDVWKE
Trigger: CTCTTTCCAAACATCACATTTCCTCTCAAGCATCCACTCAAGTGAACCATTACATGCCCTTTCACCAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp GGAATAGATCTAGTTCAAGACACAGATATACCACTATaGGTCCCAGAGGACACTCAATCTACTACAGAGACA +
Preference number: 3 (lower is better)
Translates to: GIDLVQDTDIPL*VPEDTQSTTET
Trigger: TGTCTCTGTAGTAGATTGAGTGTCCTCTGGGACCCATAGTGGTATATCTGTGTCTTGAACTAGATCTATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTAGCTCCATCTGAATATTaGCTTGGGTATATACACGCG +
Preference number: 3 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLAPSEY*LGYIHA
Trigger: CGCGTGTATATACCCAAGCAAATATTCAGATGGAGC...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGGTGATACTTACTGGCTaGCTTCCTCTGGCTTCCTTC +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQVILTG*LPLASF
Trigger: GAAGGAAGCCAGAGGAAGCAAGCCAGTAAGTATCAC...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp AAACATTGCTCTGCCCTGCAGATGACCAACACAAAGTaGTCTCAAAGCAATCTTTATGGGTCCTTTGCATAT +
Preference number: 3 (lower is better)
Translates to: KHCSALQMTNTK*SQSNLYGSFAY
Trigger: ATATGCAAAGGACCCATAAAGATTGCTTTGAGATCACTTTGTGTTGGTCATCTGCAGGGCAGAGCAATGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp GTACAAACTTGTCCATTCACTATGGAATCAGTGTGGTaGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAA +
Preference number: 3 (lower is better)
Translates to: VQTCPFTMESVW*FLRKLGIDLVQ
Trigger: TTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCACACTGATTCCATAGTGAATGGACAAGTTTGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp GTAGTACAAACTTGTCCATTCACTATGGAATCAGTGTaGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTT +
Preference number: 3 (lower is better)
Translates to: VVQTCPFTMESV*WFLRKLGIDLV
Trigger: AACTAGATCTATTCCCAACTTCCTGAGGAACCACCACACTGATTCCATAGTGAATGGACAAGTTTGTACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAGTGAGGAGGTAATTTaGAATAACCTCAGCATCAAG +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELSEEVI*NNLSIK
Trigger: CTTGATGCTGAGGTTATTCAAAATTACCTCCTCACT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTAATGAACACACCTCCTTaGTCTGTGCACATGTATACA +
Preference number: 3 (lower is better)
Translates to: HRREVEEIGESLSGRLILMNTPP*SVHMYT
Trigger: TGTATACATGTGCACAGACAAAGGAGGTGTGTTCAT...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTACAGTTCCACAACTCATaGAACACAGAGAAATTGAGG +
Preference number: 3 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLQFHNS*NTEKLR
Trigger: CCTCAATTTCTCTGTGTTCAATGAGTTGTGGAACTG...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAGGGAAGTTGAAGCATaGAAGAACCACAATTACAGT +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELREVEA*KNHNYS
Trigger: ACTGTAATTGTGGTTCTTCAATGCTTCAACTTCCCT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAAGAACTCTCATGTGTaGCTCTTGGTAGTACAAACT +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELKNSHV*LLVVQT
Trigger: AGTTTGTACTACCAAGAGCAACACATGAGAGTTCTT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGAGGGTAAAGACTTCTTaGCAACTGGGATGTGGAGCA +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQRVKTS*QLGCGA
Trigger: TGCTCCACATCCCAGTTGCAAAGAAGTCTTTACCCT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTGTATCTCTGTTAAAGTaGTTTGCACCTATGTCTTCA +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELVSLLK*FAPMSS
Trigger: TGAAGACATAGGTGCAAACAACTTTAACAGAGATAC...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCGGATCAGGAAATTGTTaGGAGATATGTAGCAGGGAG +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIGSGNC*EICSRE
Trigger: CTCCCTGCTACATATCTCCAAACAATTTCCTGATCC...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCTCCATGTATTTTCATaGCCAGGTAAGGTTCCCAGA +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKILHVFS*PGKVPR
Trigger: TCTGGGAACCTTACCTGGCAATGAAAATACATGGAG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTCGTTGGAGACTCAGTaGTGTCATGTAATATTTTTC +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELSLETQ*CHVIFF
Trigger: GAAAAATATTACATGACACAACTGAGTCTCCAACGA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCGTAGCTTCTGCCAAGTaGACAGAAAATAAGCCAGCA +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIVASAK*TENKPA
Trigger: TGCTGGCTTATTTTCTGTCAACTTGGCAGAAGCTAC...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTTCTTGTTAAGATACTaGTACTGTGCAGTTCTGCTT +
Preference number: 3 (lower is better)
Translates to: IGGTQFSSHPITFYDTELFLLRY*YCAVLL
Trigger: AAGCAGAACTGCACAGTACAAGTATCTTAACAAGAA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp CCAAGTACAGAAGAGACAAACTATCAGAGCATAAGATaGATGGTATCTGAAGAAAAGCAGCCAAGGTTGTCT +
Preference number: 3 (lower is better)
Translates to: PSTEETNYQSIR*MVSEEKQPRLS
Trigger: AGACAACCTTGGCTGCTTTTCTTCAGATACCATTCATCTTATGCTCTGATAGTTTGTCTCTTCTGTACTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCATGCTCTTAGAGAGTTaGCATACAGATAGAGGTCAG +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIMLLES*HTDRGQ
Trigger: CTGACCTCTATCTGTATGCAAACTCTCTAAGAGCAT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGATGCTCTTAGAGAGTTaGCATACAGATAGAGGTCAG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQMLLES*HTDRGQ
Trigger: CTGACCTCTATCTGTATGCAAACTCTCTAAGAGCAT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCTGGGCCTTCTGCCATaGATTGTGAAAATTGTGAAA +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKILGLLP*IVKIVK
Trigger: TTTCACAATTTTCACAATCAATGGCAGAAGGCCCAG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCTGGAGAGGGCAGTTTaGACTTTATGGTTGTTAGAA +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKILERAV*TLWLLE
Trigger: TTCTAACAACCATAAAGTCAAAACTGCCCTCTCCAG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp TTTGCTCTCCAAAAACTGATGTTAAAGCCATATTTCTaGGGACATCAGTTCCACAACTCATTGAACACAGAG +
Preference number: 3 (lower is better)
Translates to: FALQKLMLKPYF*GHQFHNSLNTE
Trigger: CTCTGTGTTCAATGAGTTGTGGAACTGATGTCCTCAGAAATATGGCTTTAACATCAGTTTTTGGAGAGCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR TCA 72 bp TGGAACAACCACATAACAGGGATACAGAGTCCAAAGTaGAATCTATCATTACCAAATGAATCTCCCAGTACT +
Preference number: 3 (lower is better)
Translates to: WNNHITGIQSPK*NLSLPNESPST
Trigger: AGTACTGGGAGATTCATTTGGTAATGATAGATTTCACTTTGGACTCTGTATCCCTGTTATGTGGTTGTTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGAGTGAGGAGGTAATTTaGAATAACCTCAGCATCAAG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQSEEVI*NNLSIK
Trigger: CTTGATGCTGAGGTTATTCAAAATTACCTCCTCACT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGGAAACTAGACAGTCATaGGTCTTCCTTCTTGATCTT +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQETRQS*VFLLDL
Trigger: AAGATCAAGAAGGAAGACCAATGACTGTCTAGTTTC...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCAGGGAAGTTGAAGCATaGAAGAACCACAATTACAGT +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIREVEA*KNHNYS
Trigger: ACTGTAATTGTGGTTCTTCAATGCTTCAACTTCCCT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGCTACTGGTTCATTTTTaGGTGATGTTAAGTGGACTG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQLLVHF*VMLSGL
Trigger: CAGTCCACTTAACATCACCAAAAAATGAACCAGTAG...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCCACATGATGTTTTTCTaGAAGCTTTCTGGTGAAAGG +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIHMMFF*KLSGER
Trigger: CCTTTCACCAGAAAGCTTCAAGAAAAACATCATGTG...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp AAGCTTAGAAAGTCACTATCAGCAAGGATCTTCTTTTaGATAAACTCGGCAGCATGGGAATATTCATTTTAC +
Preference number: 3 (lower is better)
Translates to: KLRKSLSARIFF*INSAAWEYSFY
Trigger: GTAAAATGAATATTCCCATGCTGCCGAGTTTATGCAAAAGAAGATCCTTGCTGATAGTGACTTTCTAAGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp TTATCGTGTCATCTGGAGAGGGCAGTTTTGACTTTATaGTTGTTAGAAAGTGGTACTTTCAAATGGAAATGT +
Preference number: 3 (lower is better)
Translates to: LSCHLERAVLTL*LLESGTFKWKC
Trigger: ACATTTCCATTTGAAAGTACCACTTTCTAACAACCATAAAGTCAAAACTGCCCTCTCCAGATGACACGATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp TCAGCAAGGATCTTCTTTTGCATAAACTCGGCAGCATaGGAATATTCATTTTACAAAGTACAAAGGAGAAAG +
Preference number: 3 (lower is better)
Translates to: SARIFFCINSAA*EYSFYKVQRRK
Trigger: CTTTCTCCTTTGTACTTTGTAAAATGAATATTCCCATGCTGCCGAGTTTATGCAAAAGAAGATCCTTGCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCTTACTTCACAGATCTTaGCTTGTTGTGACTTCACAT +
Preference number: 3 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKILLHRS*LVVTSH
Trigger: ATGTGAAGTCACAACAAGCAAAGATCTGTGAAGTAA...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp AAGCCCATCTCTAACTCAAAAATGATCTTCCTCAAATaGCCAGTTGCAAATGAAATATTAGTTTTCTCCAAG +
Preference number: 3 (lower is better)
Translates to: KPISNSKMIFLK*PVANEILVFSK
Trigger: CTTGGAGAAAACTAATATTTCATTTGCAACTGGGCATTTGAGGAAGATCATTTTTGAGTTAGAGATGGGCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR GCA 72 bp AAAGAGTATATGTATATACCAGTGGACAATGGATTTTaGTCTTGCATTCATTTGCCTTGCTTACTTCACAGA +
Preference number: 3 (lower is better)
Translates to: KEYMYIPVDNGF*SCIHLPCLLHR
Trigger: TCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATACATATACTCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CCA 72 bp AATGTGATGTTTGGAAAGAGTATATGTATATACCAGTaGACAATGGATTTTGCTCTTGCATTCATTTGCCTT +
Preference number: 3 (lower is better)
Translates to: NVMFGKSICIYQ*TMDFALAFICL
Trigger: AAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTATATACATATACTCTTTCCAAACATCACATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CCAGAGGGCAAAGAAAAGTCAAGGGTAAAGACTTCTTaGCAACTGGGATGTGGAGCAGTCAGAGGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: PEGKEKSRVKTS*QLGCGAVRGWG
Trigger: CCCCCACCCTCTGACTGCTCCACATCCCAGTTGCAAAGAAGTCTTTACCCTTGACTTTTCTTTGCCCTCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp AACGTGCCTGTTGGGGGTGAACAACAGGGTTCAGACTaGGTGTCTGAGACTGGAAATTTACCACACAAAAGA +
Preference number: 4 (lower is better)
Translates to: NVPVGGEQQGSD*VSETGNLPHKR
Trigger: TCTTTTGTGTGGTAAATTTCCAGTCTCAGACACCAAGTCTGAACCCTGTTGTTCACCCCCAACAGGCACGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp ACCTTTCCTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTTGCCAATACCCAGCCTACTACTGAATaGCAAATTGAAAGACCAAAA +
Preference number: 4 (lower is better)
Translates to: TFPVSIHPSAGLCSLANTQPTTE*QIERPK
Trigger: TTTTGGTCTTTCAATTTGTCATTCAGTAGTAGGCTG...GGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAGGAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAGTCCAACCAGTACATaGCCACAAAGAACACTACCA +
Preference number: 4 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLSPTST*PQRTLP
Trigger: TGGTAGTGTTCTTTGTGGTCATGTACTGGTTGGACT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CTGTCTCTATTCACCCTTCTGCTGGGCTCTGCTCTCTaGCCAATACCCACTTCTACTGTCACATATAAAGTA +
Preference number: 4 (lower is better)
Translates to: LSLFTLLLGSAL*PIPTSTVTYKV
Trigger: TACTTTATATGTGACAGTAGAAGTGGGTATTGGCAAGAGAGCAGAGCCCAGCAGAAGGGTGAATAGAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CCA 90 bp TCTTCCTGCATCTGCAGACTCAGGAGGATTAGTGGAGCCTGGTGTTTTCTTCTGCAAGAAATACATCCCTaGCGATTATCACTGTTAAAA +
Preference number: 4 (lower is better)
Translates to: SSCICRLRRISGAWCFLLQEIHP*RLSLLK
Trigger: TTTTAACAGTGATAATCGCCAGGGATGTATTTCTTG...CAGAAGAAAACACCAGGCTCCACTAATCCTCCTGAGTCTGCAGATGCAGGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CCTAGAGACATTTCCGCAACTGAAGCTCCTTGCTTTTaGATGACTGTAGCTTCTGCCAAGTTGACAGAAAAT +
Preference number: 4 (lower is better)
Translates to: PRDISATEAPCF*MTVASAKLTEN
Trigger: ATTTTCTGTCAACTTGGCAGAAGCTACAGTCATCAAAAAGCAAGGAGCTTCAGTTGCGGAAATGTCTCTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp TTAGTGGAGCCTGGTGTTTTCTTCTGCATGGAGCTACTGCTACTGGTTCATTTTTGCTTGTGGTCAACATaGCTCCTACAAGAAATACAT +
Preference number: 4 (lower is better)
Translates to: LVEPGVFFCMELLLLVHFCLWST*LLQEIH
Trigger: ATGTATTTCTTGTAGGAGTCATGTTGACCACAAGCA...AAAATGAACCAGTAGCAGTAGCTCCATGCAGAAGAAAACACCAGGCTCCACTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CATCATATAGATGACTCTGAGCATCCACTTCTGTATTaGCCAGGCACTGGCATGGCTTTTGTATTCTTAAAG +
Preference number: 4 (lower is better)
Translates to: HHIDDSEHPLLY*PGTGMAFVFLK
Trigger: CTTTAAGAATACAAAAGCCATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCAGAGTCATCTATATGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CAATACAATGGATACATACAAGCTAAGAGACTGTGGTaGCATTCACAGGGACTGCACAGATTTCACCTGATA +
Preference number: 4 (lower is better)
Translates to: QYNGYIQAKRLW*HSQGLHRFHLI
Trigger: TATCAGGTGAAATCTGTGCAGTCCCTGTGAATGCAACCACAGTCTCTTAGCTTGTATGTATCCATTGTATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp GATGTAAAACATCATGGAAGAGTGATACTTACTGGCTaGCTTCCTCTGGCTTCCTTCACCTCTTTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: DVKHHGRVILTG*LPLASFTSFVK
Trigger: CTTTACAAAAGAGGTGAAGGAAGCCAGAGGAAGCAAGCCAGTAAGTATCACTCTTCCATGATGTTTTACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp AGTGATCACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCAGTTATCTCCTTCACTaGGGATCATCATTATGTGAA +
Preference number: 4 (lower is better)
Translates to: SDHRREVEEIGESLSGRLSYLLH*GSSLCE
Trigger: TTCACATAATGATGATCCTCAGTGAAGGAGATAACT...GAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTGATCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp TGGTGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCATGTTTGCATTGCATTTaGTGTCTGCACAAGGTAATC +
Preference number: 4 (lower is better)
Translates to: WWFLRKLGIDLVQDTDIPCLHCI*CLHKVI
Trigger: GATTACCTTGTGCAGACATCAAATGCAATGCAAACA...TGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTTGTTTGCATTGCATTTaGTGTCTGCACAAGGTAATC +
Preference number: 4 (lower is better)
Translates to: IGGTQFSSHPITFYDTELCLHCI*CLHKVI
Trigger: GATTACCTTGTGCAGACATCAAATGCAATGCAAACA...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp AGTGATCACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATGCTCTTAAGTAGCTaGTGTTATGAAGATGTTTGC +
Preference number: 4 (lower is better)
Translates to: SDHRREVEEIGESLSGRLMLLSS*CYEDVC
Trigger: GCAAACATCTTCATAACATCAGCTACTTAAGAGCAT...GAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTGATCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTATTAATTGATAAAAGTTCTTGTACACAGAGTCCAACCAGTACATaGCCACAAAGAACACTACCA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVLIDKSSCTQSPTST*PQRTLP
Trigger: TGGTAGTGTTCTTTGTGGTCATGTACTGGTTGGACT...CTGTGTACAAGAACTTTTATCAATTAATACACACACACACACACACACACACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp AGTGGACAATGGATTTTGCTCTTGCATTCATTTGCCTaGCTTACTTCACAGATCTTTGCTTGTTGTGACTTC +
Preference number: 4 (lower is better)
Translates to: SGQWILLLHSFA*LTSQIFACCDF
Trigger: GAAGTCACAACAAGCAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp ATACCAGTGGACAATGGATTTTGCTCTTGCATTCATTaGCCTTGCTTACTTCACAGATCTTTGCTTGTTGTG +
Preference number: 4 (lower is better)
Translates to: IPVDNGFCSCIH*PCLLHRSLLVV
Trigger: CACAACAAGCAAAGATCTGTGAAGTAAGCAAGGCAAATGAATGCAAGAGCAAAATCCATTGTCCACTGGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp GTGAAAGGGCATGTAATGGTTCACTTGAGTGGATGCTaGAGAGGAAATGTGATGTTTGGAAAGAGTATATGT +
Preference number: 4 (lower is better)
Translates to: VKGHVMVHLSGC*RGNVMFGKSIC
Trigger: ACATATACTCTTTCCAAACATCACATTTCCTCTCAAGCATCCACTCAAGTGAACCATTACATGCCCTTTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp AGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTaGCTCTTGGTAGTACAAACTTGTCCATTCACTATG +
Preference number: 4 (lower is better)
Translates to: RQAKMWNKNSHV*LLVVQTCPFTM
Trigger: CATAGTGAATGGACAAGTTTGTACTACCAAGAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTAAGTTATCTCCTTCACTaGGGATCATCATTATGTGAA +
Preference number: 4 (lower is better)
Translates to: HRREVEEIGESLSGRLILSYLLH*GSSLCE
Trigger: TTCACATAATGATGATCCTCAGTGAAGGAGATAACT...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR TCA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTACAGCCTACTACTGAATaGCAAATTGAAAGACCAAAA +
Preference number: 4 (lower is better)
Translates to: HRREVEEIGESLSGRLILQPTTE*QIERPK
Trigger: TTTTGGTCTTTCAATTTGTCATTCAGTAGTAGGCTG...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp GGTTGTTTTGCTAAGAACAGACACATGATGTTTTTCTaGAAGCTTTCTGGTGAAAGGGCATGTAATGGTTCA +
Preference number: 4 (lower is better)
Translates to: GCFAKNRHMMFF*KLSGERACNGS
Trigger: TGAACCATTACATGCCCTTTCACCAGAAAGCTTCAAGAAAAACATCATGTGTCTGTTCTTAGCAAAACAACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp GCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCTaGGTAGTACAAACTTGTCCATTCACTATGGAATCA +
Preference number: 4 (lower is better)
Translates to: AKMWNKNSHVLL*VVQTCPFTMES
Trigger: TGATTCCATAGTGAATGGACAAGTTTGTACTACCAAGAGCAACACATGAGAGTTCTTATTCCACATCTTTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp CACCCATATTTATCGTGTCATCTGGAGAGGGCAGTTTaGACTTTATGGTTGTTAGAAAGTGGTACTTTCAAA +
Preference number: 4 (lower is better)
Translates to: HPYLSCHLERAV*TLWLLESGTFK
Trigger: TTTGAAAGTACCACTTTCTAACAACCATAAAGTCAAAACTGCCCTCTCCAGATGACACGATAAATATGGGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CCA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTACAAGAAATACATCCCTaGCGATTATCACTGTTAAAA +
Preference number: 4 (lower is better)
Translates to: HRREVEEIGESLSGRLILQEIHP*RLSLLK
Trigger: TTTTAACAGTGATAATCGCCAGGGATGTATTTCTTG...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
3UTR CAA 72 bp AATCACTATTTTTCAAACATGACAACAAACATGCACTaGCTGAAGATGATCAGATTGCGATGTATCTTGGAA +
Preference number: 4 (lower is better)
Translates to: NHYFSNMTTNMH*LKMIRLRCILE
Trigger: TTCCAAGATACATCGCAATCTGATCATCTTCAGCAAGTGCATGTTTGTTGTCATGTTTGAAAAATAGTGATT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp AAGACCCACAGTAGGAAAAACATGCAGAGAGTGAGAGACTTTGGGCCTCTCAGTAACTCCAAGTCCAGCTaGGATATAAAAGACATTCTC +
Preference number: 5 (lower is better)
Translates to: KTHSRKNMQRVRDFGPLSNSKSS*DIKDIL
Trigger: GAGAATGTCTTTTATATCCAAGCTGGACTTGGAGTT...ACTGAGAGGCCCAAAGTCTCTCACTCTCTGCATGTTTTTCCTACTGTGGGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp CAATGGCACCACAGACAGGCAAAGATGTGGAATAAGAACTCTCATGTGTTGCTCAACTCCAAGTCCAGCTaGGATATAAAAGACATTCTC +
Preference number: 5 (lower is better)
Translates to: QWHHRQAKMWNKNSHVLLNSKSS*DIKDIL
Trigger: GAGAATGTCTTTTATATCCAAGCTGGACTTGGAGTT...GAGCAACACATGAGAGTTCTTATTCCACATCTTTGCCTGTCTGTGGTGCCATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp ATAGGTGGCACCCAATTTAGTTCCCATCCCATCACCTTTTATGACACTGAACTTAAAAGGAGAAACATATaGGCTAGAACTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: IGGTQFSSHPITFYDTELKRRNI*ARTPSP
Trigger: TGGACTTGGAGTTCTAGCCAATATGTTTCTCCTTTT...AAGTTCAGTGTCATAAAAGGTGATGGGATGGGAACTAAATTGGGTGCCACCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTAAAAAGGAGAAACATATaGGCTAGAACTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: HRREVEEIGESLSGRLILKRRNI*ARTPSP
Trigger: TGGACTTGGAGTTCTAGCCAATATGTTTCTCCTTTT...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp CACAGAAGAGAAGTGGAAGAGATAGGAGAATCCCTATCTGGTAGACTCATATTAAAAATCTGGTGGAACTaGGAGTGCATGTTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: HRREVEEIGESLSGRLILKIWWN*ECMFFS
Trigger: ACTGAAAAACATGCACTCCAAGTTCCACCAGATTTT...TAATATGAGTCTACCAGATAGGGATTCTCCTATCTCTTCCACTTCTCTTCTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp TGGTTCCTCAGGAAGTTGGGAATAGATCTAGTTCAAGACACAGATATACCACTAATGAAGATGTTTGCATaGCATTTGATGTCTGCACAA +
Preference number: 5 (lower is better)
Translates to: WFLRKLGIDLVQDTDIPLMKMFA*HLMSAQ
Trigger: TTGTGCAGACATCAAATGCAATGCAAACATCTTCAT...TAGTGGTATATCTGTGTCTTGAACTAGATCTATTCCCAACTTCCTGAGGAACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2
CDS-3UTR CAA 90 bp GATGGAAAAGTAACACAGTTGACCATACCTAGGACTAACCATGATCTTAAAATCAAAATCTGGTGGAACTaGGAGTGCATGTTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: DGKVTQLTIPRTNHDLKIKIWWN*ECMFFS
Trigger: ACTGAAAAACATGCACTCCAAGTTCCACCAGATTTT...GATTTTAAGATCATGGTTAGTCCTAGGTATGGTCAACTGTGTTACTTTTCCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000226813.2
ENSMUST00000227805.2