Pregenerated sensors for VMN1R27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071428Ensembl transcript IDs: ENSMUST00000095862.2, ENSMUST00000226666.2, ENSMUST00000228530.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCCCTTGGACCACCATCTTGACACAGCTCCGAGAGAGAGAGAGATaGTCTATTAAGACAGCAGGTGAATGGCAACAGCAAAGCAAACAG | + |
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Preference number: 1 (lower is better) Translates to: SPWTTILTQLRERER*SIKTAGEWQQQSKQ Trigger: CTGTTTGCTTTGCTGTTGCCATTCACCTGCTGTCTTAATAGAGCATCTCTCTCTCTCTCGGAGCTGTGTCAAGATGGTGGTCCAAGGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CCA 90 bp | TCACAGAGTTCCACTTCCTATCCCTCATCCCCTTCTTCTCTGATATaGTGTCCCACCCCATTGTATTACACTGCCCAGGCAATAAAGTCT | + |
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Preference number: 1 (lower is better) Translates to: SQSSTSYPSSPSSLI*CPTPLYYTAQAIKS Trigger: AGACTTTATTGCCTGGGCAGTGTAATACAATGGGGTGGGACACCATATCAGAGAAGAAGGGGATGAGGGATAGGAAGTGGAACTCTGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CCA 90 bp | CAGCTCCGAGAGAGAGAGAGATGCTCTATTAAGACAGCAGGTGAATaGCAACAGCAAAGCAAACAGAAAGAGCAGGTGACAGCCAACATT | + |
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Preference number: 1 (lower is better) Translates to: QLRERERCSIKTAGE*QQQSKQKEQVTANI Trigger: AATGTTGGCTGTCACCTGCTCTTTCTGTTTGCTTTGCTGTTGCCATTCACCTGCTGTCTTAATAGAGCATCTCTCTCTCTCTCGGAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR GCA 90 bp | ATGGCAACAGCAAAGCAAACAGAAAGAGCAGGTGACAGCCAACATTaGCTTCTGTCCCCCATTGCACATATACATACATATTTTATCTGT | + |
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Preference number: 1 (lower is better) Translates to: MATAKQTERAGDSQH*LLSPIAHIHTYFIC Trigger: ACAGATAAAATATGTATGTATATGTGCAATGGGGGACAGAAGGCAATGTTGGCTGTCACCTGCTCTTTCTGTTTGCTTTGCTGTTGCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CCA 90 bp | GGGAAACAAAGATGTCCCTCAACTGAAGAAGGGATAAAGAAAATGTaGTACATCTACACAGTGAAATATTATTCGGCTATTGGGAGAGGG | + |
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Preference number: 1 (lower is better) Translates to: GKQRCPSTEEGIKKM*YIYTVKYYSAIGRG Trigger: CCCTCTCCCAATAGCCGAATAATATTTCACTGTGTAGATGTACCACATTTTCTTTATCCCTTCTTCAGTTGAGGGACATCTTTGTTTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR TCA 90 bp | GAAATCAATGTTGAAGTTTCTCTGCAAACAAGAAATAGTTCTACATaGAGATCCAGATATAACACTACTGGGCATAAACCCAAAAGGAGT | + |
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Preference number: 1 (lower is better) Translates to: EINVEVSLQTRNSST*RSRYNTTGHKPKRS Trigger: ACTCCTTTTGGGTTTATGCCCAGTAGTGTTATATCTGGATCTTCATGTAGAACTATTTCTTGTTTGCAGAGAAACTTCAACATTGATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGGGGAATGGATTCCATaGCAGACAGCAACTTTAGGA | + |
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Preference number: 2 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRGEWIP*QTATLG Trigger: TCCTAAAGTTGCTGTCTGTCATGGAATCCATTCCCC...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAATTCCACTCCCAGAGCTaGAGAGGCAGTTACCGAAGA | + |
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Preference number: 2 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQFHSQS*RGSYRR Trigger: TCTTCGGTAACTGCCTCTCCAGCTCTGGGAGTGGAA...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGGAACAGGCACAGTTTaGTGGGGGAATTCACATGGA | + |
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Preference number: 2 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQGTGTV*WGNSHG Trigger: TCCATGTGAATTCCCCCAGCAAACTGTGCCTGTTCC...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTGGTGACAGCCAACATTaGCTTCTGTCCCCCATTGCA | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLGDSQH*LLSPIA Trigger: TGCAATGGGGGACAGAAGGCAATGTTGGCTGTCACC...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGACCAATTTCAGGATATTaGATGACATATCACCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRPISGY*MTYHLC Trigger: GCAGAGGTGATATGTCATGCAATATCCTGAAATTGG...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGATACATATTTTATCTGTaGACACACATAGATCCATGC | + |
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Preference number: 2 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRYIFYL*THIDPC Trigger: GCATGGATCTATGTGTGTGCACAGATAAAATATGTA...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTCGAGAGAGAGAGAGATaGTCTATTAAGACAGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLRERER*SIKTAG Trigger: ACCTGCTGTCTTAATAGAGCATCTCTCTCTCTCTCG...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAACCTTCTGTCCCCCATTaGACATATACATACATATTT | + |
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Preference number: 2 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQPSVPH*TYTYIF Trigger: AAATATGTATGTATATGTGCAATGGGGGACAGAAGG...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTATAGCAGTCAAAAGCTaGGAAACAAAGATGTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLIAVKS*ETKMSL Trigger: GAGGGACATCTTTGTTTCCCAGCTTTTGACTGCTAT...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAATCTCAAAAAGTCACTTaGTCAATTACGTTCATAGCA | + |
|
Preference number: 2 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQSQKVT*SITFIA Trigger: TGCTATGAACGTAATTGAGCAAGTGACTTTTTGAGA...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTGGTACATCTACACAGTaGAATATTATTCGGCTATTG | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLGTSTQ*NIIRLL Trigger: CAATAGCCGAATAATATTTCACTGTGTAGATGTACC...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTACTGGAAATCAATGTTaGAGTTTCTCTGCAAACAAG | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLTGNQC*SFSANK Trigger: CTTGTTTGCAGAGAAACTTCAACATTGATTTCCAGT...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTCCTTCTGTCCCCCATTaGACATATACATACATATTT | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLPSVPH*TYTYIF Trigger: AAATATGTATGTATATGTGCAATGGGGGACAGAAGG...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR GCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTTCTCAAAAAGTCACTTaGTCAATTACGTTCATAGCA | + |
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Preference number: 2 (lower is better) Translates to: PNQGQDGAQQESTLQCKLSQKVT*SITFIA Trigger: TGCTATGAACGTAATTGAGCAAGTGACTTTTTGAGA...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CAA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTAGGAACAGGCACAGTTaGCTGGGGGAATTCACATGG | + |
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Preference number: 3 (lower is better) Translates to: PNQGQDGAQQESTLQCKLRNRHS*LGEFTW Trigger: CCATGTGAATTCCCCCAGCAAACTGTGCCTGTTCCT...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAATGAAGAATCCTGCTTaGCTACCTGAACCATTAAAG | + |
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Preference number: 3 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRMKNPA*LPEPLK Trigger: CTTTAATGGTTCAGGTAGCAAAGCAGGATTCTTCAT...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR TCA 72 bp | GTGAATGGCAACAGCAAAGCAAACAGAAAGAGCAGGTaGCAGCCAACATTGCCTTCTGTCCCCCATTGCACA | + |
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Preference number: 3 (lower is better) Translates to: VNGNSKANRKSR*QPTLPSVPHCT Trigger: TGTGCAATGGGGGACAGAAGGCAATGTTGGCTGTCACCTGCTCTTTCTGTTTGCTTTGCTGTTGCCATTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CAA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTAATATTATTCGGCTATaGGGAGAGGGGATAGGGGAT | + |
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Preference number: 3 (lower is better) Translates to: PNQGQDGAQQESTLQCKLNIIRL*GEGIGD Trigger: ATCCCCTATCCCCTCTCCCAATAGCCGAATAATATT...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAACTCTTCAATGTAAACTaGTGCAACCACACTGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQLFNVN*CNHTGN Trigger: ATTTCCAGTGTGGTTGCACAAGTTTACATTGAAGAG...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR GCA 72 bp | ACCACCATCTTGACACAGCTCCGAGAGAGAGAGAGATaGTCTATTAAGACAGCAGGTGAATGGCAACAGCAA | + |
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Preference number: 3 (lower is better) Translates to: TTILTQLRERER*SIKTAGEWQQQ Trigger: TTGCTGTTGCCATTCACCTGCTGTCTTAATAGAGCATCTCTCTCTCTCTCGGAGCTGTGTCAAGATGGTGGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CCA 72 bp | GAGAGAGAGAGATGCTCTATTAAGACAGCAGGTGAATaGCAACAGCAAAGCAAACAGAAAGAGCAGGTGACA | + |
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Preference number: 3 (lower is better) Translates to: ERERCSIKTAGE*QQQSKQKEQVT Trigger: TGTCACCTGCTCTTTCTGTTTGCTTTGCTGTTGCCATTCACCTGCTGTCTTAATAGAGCATCTCTCTCTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR GCA 72 bp | GCAAAGCAAACAGAAAGAGCAGGTGACAGCCAACATTaGCTTCTGTCCCCCATTGCACATATACATACATAT | + |
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Preference number: 3 (lower is better) Translates to: AKQTERAGDSQH*LLSPIAHIHTY Trigger: ATATGTATGTATATGTGCAATGGGGGACAGAAGGCAATGTTGGCTGTCACCTGCTCTTTCTGTTTGCTTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR GCA 72 bp | GGCAAAGACAGGTTTAAGCAGGTCGTGCTGAGTAACTaGAGTAAGGAAGTGATTGAGACAGTTTTCAAAACC | + |
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Preference number: 3 (lower is better) Translates to: GKDRFKQVVLSN*SKEVIETVFKT Trigger: GGTTTTGAAAACTGTCTCAATCACTTCCTTACTGCAGTTACTCAGCACGACCTGCTTAAACCTGTCTTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR TCA 72 bp | GTTGAAGTTTCTCTGCAAACAAGAAATAGTTCTACATaGAGATCCAGATATAACACTACTGGGCATAAACCC | + |
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Preference number: 3 (lower is better) Translates to: VEVSLQTRNSST*RSRYNTTGHKP Trigger: GGGTTTATGCCCAGTAGTGTTATATCTGGATCTTCATGTAGAACTATTTCTTGTTTGCAGAGAAACTTCAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAAGGTGCTTGATGCTATaGAGGTGCTTGCACTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRRCLML*RCLHCL Trigger: GAGGCAGTGCAAGCACCTTCATAGCATCAAGCACCT...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAACAGGTCCCCTCCAGTaGGGCACACCATTATATGAA | + |
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Preference number: 4 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRTGPLQ*GTPLYE Trigger: TTCATATAATGGTGTGCCTCACTGGAGGGGACCTGT...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAATGCTCTCAGGTGCTTaGTGCTATGAAGGTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQMLSGA*CYEGAC Trigger: GCAAGCACCTTCATAGCATCAAGCACCTGAGAGCAT...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGATCTCTGGTGGTGCTTTaGGTACATGTTTTTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRSLVVL*VHVFHH Trigger: ATGGTGAAAAACATGTACTCAAAGCACCACCAGAGA...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGACCGGCTACTACTGTATaGAAAACTGAAAGACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRPATTV*KTERPN Trigger: ATTTGGTCTTTCAGTTTTTCATACAGTAGTAGCCGG...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR GCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGGCATCTCATCACCCTaGTTATGTAAAAAGTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQGISSP*LCKKLP Trigger: AGGCAACTTTTTACATAAGCAGGGTGATGAGATGCC...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR CCA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGACCATGTATGTACTTGTaGTTAGCATCATTCCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRPCMYL*LASFLQ Trigger: TTGTAGGAATGATGCTAACCACAAGTACATACATGG...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CAA 72 bp | TCCATGACAGACAGCAACTTTAGGAACAGGCACAGTTaGCTGGGGGAATTCACATGGAGACTGGGCTGTACA | + |
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Preference number: 4 (lower is better) Translates to: SMTDSNFRNRHS*LGEFTWRLGCT Trigger: TGTACAGCCCAGTCTCCATGTGAATTCCCCCAGCAAACTGTGCCTGTTCCTAAAGTTGCTGTCTGTCATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGTGGGCTTAGGTCTGTaGCCTACAATTATGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQVGLGL*PTIMKI Trigger: TATTTTCATAATTGTAGGTCACAGACCTAAGCCCAC...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | GGTCAGCTTCTCCAGCTGATGCTAAACAAGGCAGGACTGTTGGGGAATGGATTCACACCATTATATGAATaGAGGTCAGCTGACAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GQLLQLMLNKAGLLGNGFTPLYE*RSADRR Trigger: TCTCCTGTCAGCTGACCTTCATTCATATAATGGTGT...GAATCCATTCCCCAACAGTCCTGCCTTGTTTAGCATCAGCTGGAGAAGCTGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | CCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAGCACTCTTCAATGTAAACTTTGCTTGCACTGCCTCTaGTGTCTATACAAGATAATC | + |
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Preference number: 4 (lower is better) Translates to: PNQGQDGAQQESTLQCKLCLHCL*CLYKII Trigger: GATTATCTTGTATAGACATCAGAGGCAGTGCAAGCA...AAGTTTACATTGAAGAGTGCTCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR GCA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAAAAAATCTCTGGTGGTaGTTTGAGTACATGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQKNLWW*FEYMFF Trigger: GAAAAACATGTACTCAAAGCACCACCAGAGATTTTT...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 47% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGAAGGTGCTTGATGCTATaGAGGTGCTTGCACTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGRCLML*RCLHCL Trigger: GAGGCAGTGCAAGCACCTTCATAGCATCAAGCACCT...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGATGCTTGCACTGCCTCTaGTGTCTATACAAGATAATC | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGCLHCL*CLYKII Trigger: GATTATCTTGTATAGACATCAGAGGCAGTGCAAGCA...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR GCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGAGGCATCTCATCACCCTaGTTATGTAAAAAGTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGGISSP*LCKKLP Trigger: AGGCAACTTTTTACATAAGCAGGGTGATGAGATGCC...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR TCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGACCGGCTACTACTGTATaGAAAACTGAAAGACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGPATTV*KTERPN Trigger: ATTTGGTCTTTCAGTTTTTCATACAGTAGTAGCCGG...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CAA 72 bp | ATCCTTATAGCCATCTATAAGTCCAATTTCAGGATATaGCATGACATATCACCTCTGCAGGTAGCAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: ILIAIYKSNFRI*HDISPLQVAGM Trigger: CATTCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATAGATGGCTATAAGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR CCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGACCATGTATGTACTTGTaGTTAGCATCATTCCTACAA | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGPCMYL*LASFLQ Trigger: TTGTAGGAATGATGCTAACCACAAGTACATACATGG...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR GCA 90 bp | TATAAGTCCAATTTCAGGATATTGCATGACATATCACCTCTGCAGGTAGCAGGAAAAAATCTCTGGTGGTaGTTTGAGTACATGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: YKSNFRILHDISPLQVAGKNLWW*FEYMFF Trigger: GAAAAACATGTACTCAAAGCACCACCAGAGATTTTT...TCCTGCTACCTGCAGAGGTGATATGTCATGCAATATCCTGAAATTGGACTTATA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| 3UTR CAA 72 bp | CAATGTAAACTTGTGCAACCACACTGGAAATCAATGTaGAAGTTTCTCTGCAAACAAGAAATAGTTCTACAT | + |
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Preference number: 4 (lower is better) Translates to: QCKLVQPHWKSM*KFLCKQEIVLH Trigger: ATGTAGAACTATTTCTTGTTTGCAGAGAAACTTCAACATTGATTTCCAGTGTGGTTGCACAAGTTTACATTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR CAA 90 bp | CTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAGATGGGGCCCAACAGGAGAATCTCTGGTGGTGCTTaGAGTACATGTTTTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: LGFVLKPQTRAKMGPNRRISGGA*STCFSP Trigger: TGGTGAAAAACATGTACTCAAAGCACCACCAGAGAT...TCTCCTGTTGGGCCCCATCTTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS-3UTR CAA 90 bp | TTTCAAAACCCGAGCCAGGCTTGGGTTTGTCCTCAAGCCCCAAACCAGGGCCAAATCTCTGGTGGTGCTTaGAGTACATGTTTTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: FQNPSQAWVCPQAPNQGQISGGA*STCFSP Trigger: TGGTGAAAAACATGTACTCAAAGCACCACCAGAGAT...TTGGCCCTGGTTTGGGGCTTGAGGACAAACCCAAGCCTGGCTCGGGTTTTGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226666.2 ENSMUST00000228530.2 |
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| CDS CCA 72 bp | ATGCGGAAGAGTAAGCAGGATTTAGTGATCTGCATCTaGTTAGTCTCACTCACATTAGTAAAACCACGAACA | + |
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Preference number: 6 (lower is better) Translates to: MRKSKQDLVICI*LVSLTLVKPRT Trigger: TGTTCGTGGTTTTACTAATGTGAGTGAGACTAACCAGATGCAGATCACTAAATCCTGCTTACTCTTCCGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000095862.2 ENSMUST00000226666.2 ENSMUST00000228530.2 |
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