Pregenerated sensors for VMN1R261 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000106893

Ensembl transcript IDs: ENSMUST00000202355.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GACTTGTCTCTTATGTCTGTAGAGAATACTAACCATGAAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGAGAAGCACAC	+
Preference number: 5 (lower is better) Translates to: DLSLMSVENTNHEDT*AGHETQTEDIREAH Trigger: GTGTGCTTCTCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTTCATGGTTAGTATTCTCTACAGACATAAGAGACAAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202355.2
CDS TCA 72 bp	CTTATGTCTGTAGAGAATACTAACCATGAAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGA	+
Preference number: 6 (lower is better) Translates to: LMSVENTNHEDT*AGHETQTEDIR Trigger: TCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTTCATGGTTAGTATTCTCTACAGACATAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202355.2
CDS TCA 72 bp	ATACAATGTAGTTGCTACACTGTCAGAAGCAAACAATaGGCCGTATCCATAACTCAACCTGTTAGTTGCATT	+
Preference number: 6 (lower is better) Translates to: IQCSCYTVRSKQ*AVSITQPVSCI Trigger: AATGCAACTAACAGGTTGAGTTATGGATACGGCTCATTGTTTGCTTCTGACAGTGTAGCAACTACATTGTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202355.2
CDS CAA 72 bp	TTTCAGAAAGTGTTGAGCACTGTGGATATGCTTGACTaGTCTCTTATGTCTGTAGAGAATACTAACCATGAA	+
Preference number: 6 (lower is better) Translates to: FQKVLSTVDMLD*SLMSVENTNHE Trigger: TTCATGGTTAGTATTCTCTACAGACATAAGAGACAAGTCAAGCATATCCACAGTGCTCAACACTTTCTGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202355.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu