Pregenerated sensors for VMN1R260 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096601Ensembl transcript IDs: ENSMUST00000168392.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TGTCTTGGCCTCTGTTTAGAACCAGTCAAGACTGGGGAGAAATTATaGACAAACAGAAAGACATTGGCCACAGTCCCAACCCCAAACTGG | + |
Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEKL*TNRKTLATVPTPNW Trigger: CCAGTTTGGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCCCCAGTCTTGACTGGTTCTAAACAGAGGCCAAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168392.2 |
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CDS GCA 72 bp | AACAAATGTAAACACCAGCATCAGGATAGTATGGGTTaGTTTGGACTCAGCTTGGCCTCTGGGGTTCTGATT | + |
Preference number: 6 (lower is better) Translates to: NKCKHQHQDSMG*FGLSLASGVLI Trigger: AATCAGAACCCCAGAGGCCAAGCTGAGTCCAAAGCAACCCATACTATCCTGATGCTGGTGTTTACATTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168392.2 |
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CDS TCA 72 bp | CATCATAGGCAAACTGCAAGAAGACAATGCCCACACTaGATCCAGAAGTGGAACAGAACAGCTTTCTTTTCG | + |
Preference number: 6 (lower is better) Translates to: HHRQTARRQCPH*IQKWNRTAFFS Trigger: CGAAAAGAAAGCTGTTCTGTTCCACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCCTATGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168392.2 |
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CDS TCA 72 bp | GCAGTTAAAATCTCACTGACAAGCCTTACGAAGAAATaGGAATGCATAAAAAGGGCATGTACTATGATACAA | + |
Preference number: 6 (lower is better) Translates to: AVKISLTSLTKK*ECIKRACTMIQ Trigger: TTGTATCATAGTACATGCCCTTTTTATGCATTCTCATTTCTTCGTAAGGCTTGTCAGTGAGATTTTAACTGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168392.2 |