RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048697

Ensembl transcript IDs: ENSMUST00000049694.4, ENSMUST00000228040.2, ENSMUST00000228070.2, ENSMUST00000228951.2

Found 191 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTTGTACACCAGTCTGGCCTCAAACTCAGAAATCCACCTGTCTCTaGCTTCCAAGTGCTGGGATTAAAGGTGTGCACCAACACTGCCCG +
Preference number: 1 (lower is better)
Translates to: LCTPVWPQTQKSTCL*LPSAGIKGVHQHCP
Trigger: CGGGCAGTGTTGGTGCACACCTTTAATCCCAGCACTTGGAAGGCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGACTGGTGTACAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp ACCACCCACTCCCGCTTCTTGGCCCTAGCATTCTCCTATAAAGTTTaGAATACAGGGTTTCTCTGTAGAGCCCTGGCTGTCCTGGAACTC +
Preference number: 1 (lower is better)
Translates to: TTHSRFLALAFSYKV*NTGFLCRALAVLEL
Trigger: GAGTTCCAGGACAGCCAGGGCTCTACAGAGAAACCCTGTATTGCAAACTTTATAGGAGAATGCTAGGGCCAAGAAGCGGGAGTGGGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp AATAGTGTCTGTGTTTGGTGGTTGTTTATGGGATGGATCCCCAGATaGGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACAC +
Preference number: 1 (lower is better)
Translates to: NSVCVWWLFMGWIPR*DSLWIVIPSVFAPH
Trigger: GTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACCACCAAACACAGACACTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp GATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTaGTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTT +
Preference number: 1 (lower is better)
Translates to: DPQMGQSLDRHSFSL*STLCPCKSFHGYFV
Trigger: AACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp TGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGGATaGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTCAGTC +
Preference number: 1 (lower is better)
Translates to: CNICNSVCVWWLFMG*IPRWDSLWIVIPSV
Trigger: GACTGAAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp GTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATaGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTT +
Preference number: 1 (lower is better)
Translates to: VSAISAIVSVFGGCL*DGSPDGTVSGSSFL
Trigger: AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp AACCTGTCTGTCACTGTACCACTACCATGCTGTTATTATCACAATTaGTCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTCCACCAGA +
Preference number: 1 (lower is better)
Translates to: NLSVTVPLPCCYYHN*SVVQLEVGDGDSTR
Trigger: TCTGGTGGAATCACCATCACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCATGGTAGTGGTACAGTGACAGACAGGTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 90 bp CTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTaGTCTTACAGCCCAAGCCATTGCTGTTATGTTCAGGAATTCCCC +
Preference number: 1 (lower is better)
Translates to: LTEALQFYEVPFVDS*SYSPSHCCYVQEFP
Trigger: GGGGAATTCCTGAACATAACAGCAATGGCTTGGGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 90 bp ATTGCTGATAGTGCTATGTCCAAATTTTCTGAGGAAATGCCAGATTaGTGTCCAGAGTGTTTGTACCAGATTGCAATCCCACCAATAATG +
Preference number: 1 (lower is better)
Translates to: IADSAMSKFSEEMPD*CPECLYQIAIPPIM
Trigger: CATTATTGGTGGGATTGCAATCTGGTACAAACACTCTGGACATCAATCTGGCATTTCCTCAGAAAATTTGGACATAGCACTATCAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp TGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTaGAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCC +
Preference number: 1 (lower is better)
Translates to: CHFVLLTVSFALQKL*NFMRSHLSILDLTA
Trigger: GGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAAGACAAAATGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp TGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGGATTaGAGTATCCACACTTTGGTCTTCCTTCTTGACTTTCATGTGTTT +
Preference number: 1 (lower is better)
Translates to: CKSFHGYFVPPSKKD*SIHTLVFLLDFHVF
Trigger: AAACACATGAAAGTCAAGAAGGAAGACCAAAGTGTGGATACTCCAATCCTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp CCCTCTATCAGATTTAGGATTGGTAAAGAGCATTTCACATTCTGTTaGTTGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAA +
Preference number: 1 (lower is better)
Translates to: PSIRFRIGKEHFTFC*LPFCLIDSVLCLTE
Trigger: TTCTGTAAGGCAAAGGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAAATCTGATAGAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp AATTATATTACATTGATCAACCTGTCTGTCACTGTACCACTACCATaGTGTTATTATCACAATTGCTCTGTAGTACAGCTTGAGGTTGGT +
Preference number: 1 (lower is better)
Translates to: NYITLINLSVTVPLP*CYYHNCSVVQLEVG
Trigger: ACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCATGGTAGTGGTACAGTGACAGACAGGTTGATCAATGTAATATAATT
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 90 bp CTATCAGATTTAGGATTGGTAAAGAGCATTTCACATTCTGTTGGTTaGCATTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTT +
Preference number: 1 (lower is better)
Translates to: LSDLGLVKSISHSVG*HFVLLTVSFALQKL
Trigger: AAGCTTCTGTAAGGCAAAGGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAAATCTGATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 90 bp TCCTTTGTCAAAGATCAAGTGAGCATAGGTGTGTCAATTCATTTCTaGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTA +
Preference number: 1 (lower is better)
Translates to: SFVKDQVSIGVSIHF*VFNYITLINLSVTV
Trigger: TACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATGAATTGACACACCTATGCTCACTTGATCTTTGACAAAGGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGGTATTGAACCATACCTaGATCCCTGGGAAGAAGCCA +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLVLNHT*IPGKKP
Trigger: TGGCTTCTTCCCAGGGATGCAGGTATGGTTCAATAC...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp GGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTCAGTCTTaGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGT +
Preference number: 2 (lower is better)
Translates to: GSPDGTVSGSSFLQS*LHTLSLQILPWIFC
Trigger: ACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTGCAGAATGTATCTTTaGTATTCTGAGCTTCTGGGC +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLCRMYL*YSELLG
Trigger: GCCCAGAAGCTCAGAATACCAAAGATACATTCTGCA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGAGTGTCTGTGTTTGGTaGTTGTTTATGGGATGGATC +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLSVCVW*LFMGWI
Trigger: GATCCATCCCATAAACAACCACCAAACACAGACACT...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp TCATATTGTTGTTTCTCCTATGGTGTTGCAAATCCCTTCAGCTCCTaGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTGTTCCGT +
Preference number: 2 (lower is better)
Translates to: SYCCFSYGVANPFSS*GTFSSSFIGDPVFR
Trigger: ACGGAACACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGATTTGCAACACCATAGGAGAAACAACAATATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCTGGGCCCAGAATTCCTaGTTTTCTAAGACTTTTATC +
Preference number: 2 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCWAQNS*FSKTFI
Trigger: GATAAAAGTCTTAGAAAATCAGGAATTCTGGGCCCA...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTAACTCTGTGAGGAATTaGGTTGGAATTTTGATGGGG +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLNSVRN*VGILMG
Trigger: CCCCATCAAAATTCCAACTCAATTCCTCACAGAGTT...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTTTGGTCTTCCTTCTTaGCTTTCATGTGTTTTGCAG +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLFGLPS*LSCVLQ
Trigger: CTGCAAAACACATGAAAGTCAAGAAGGAAGACCAAA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTACAGCCCAAGCCATTaGTGTTATGTTCAGGAATTC +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLYSPSH*CYVQEF
Trigger: GAATTCCTGAACATAACAGCAATGGCTTGGGCTGTA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTCCACACTTTGTCCCTaGAAATCCTTCCATGGATAT +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLSTLCP*KSFHGY
Trigger: ATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTGGAGTATCCACACTTTaGTCTTCCTTCTTGACTTTC +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLGVSTL*SSFLTF
Trigger: GAAAGTCAAGAAGGAAGACCAAAGTGTGGATACTCC...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTGTGTTTTCTTTTATTaGTGGTTTAGTCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLCVFFY*WFSPRE
Trigger: CTCTCTGGGACTAAACCATCAATAAAAGAAAACACA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTTCTTTTGGAACAGATaGTGTGTTCTACTCACCAGT +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLFFWNR*CVLLTS
Trigger: ACTGGTGAGTAGAACACAGCATCTGTTCCAAAAGAA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAGGGTTGTTTTGATTTaGATTTCCCTGATGACTAAG +
Preference number: 2 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCRVVLI*ISLMTK
Trigger: CTTAGTCATCAGGGAAATGCAAATCAAAACAACCCT...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGCCATACCTGCATCCCTaGGAAGAAGCCAACTTGATC +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKPYLHP*EEANLI
Trigger: GATCAAGTTGGCTTCTTCCCAGGGATGCAGGTATGG...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGCATTTAGTTTGGTGTTaGGTACTGGTTTGCTGTATA +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLHLVWC*VLVCCI
Trigger: TATACAGCAAACCAGTACCCAACACCAAACTAAATG...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCTTAGGAGTTCTCTGGTaGAATAATTGTGGTCACTTA +
Preference number: 2 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCLGVLW*NNCGHL
Trigger: TAAGTGACCACAATTATTCCACCAGAGAACTCCTAA...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCCATTCAGAATGGTGTaGGGTAGAATCCCAGGGTTG +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWPFRMV*GRIPGL
Trigger: CAACCCTGGGATTCTACCTCACACCATTCTGAATGG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCCATACCTGCATCCCTaGGAAGAAGCCAACTTGATC +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWPYLHP*EEANLI
Trigger: GATCAAGTTGGCTTCTTCCCAGGGATGCAGGTATGG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTTTGGTGTTGGGTACTaGTTTGCTGTATATTTCTTT +
Preference number: 2 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLFGVGY*FAVYFF
Trigger: AAAGAAATATACAGCAAACCAGTACCCAACACCAAA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTTAGGAGTTCTCTGGTaGAATAATTGTGGTCACTTA +
Preference number: 2 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLLGVLW*NNCGHL
Trigger: TAAGTGACCACAATTATTCCACCAGAGAACTCCTAA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTGGGTTAGGAGTTCTCTaGTGGAATAATTGTGGTCAC +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFGLGVL*WNNCGH
Trigger: GTGACCACAATTATTCCACCAGAGAACTCCTAACCC...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCTGTTGAGGGACATCTaGGTTCTTTCCACCTTCTTG +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWLLRDI*VLSTFL
Trigger: CAAGAAGGTGGAAAGAACCCAGATGTCCCTCAACAG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp ATCTGGGGTTACTTGTTAGTTCATATTGTTGTTTCTCCTATGGTGTaGCAAATCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCA +
Preference number: 2 (lower is better)
Translates to: IWGYLLVHIVVSPMV*QIPSAPWVLSLAPS
Trigger: TGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGATTTGCAACACCATAGGAGAAACAACAATATGAACTAACAAGTAACCCCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGGCCATTTTGTCTTATTaGCAGTGTCCTTTGCCTTAC +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKAILSY*QCPLPY
Trigger: GTAAGGCAAAGGACACTGTCAATAAGACAAAATGGC...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGCCATACCTGCATCCCTaGGAAGAAGCCAACTTGATC +
Preference number: 2 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGPYLHP*EEANLI
Trigger: GATCAAGTTGGCTTCTTCCCAGGGATGCAGGTATGG...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGTCTCTCCATTTAGTTTaGTGTTGGGTACTGGTTTGC +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKSLHLV*CWVLVC
Trigger: GCAAACCAGTACCCAACACCAAACTAAATGGAGAGA...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp CCCCTTCTAAGAAGGATTGGAGTATCCACACTTTGGTCTTCCTTCTaGACTTTCATGTGTTTTGCAGAATGTATCTTTGGTATTCTGAGC +
Preference number: 2 (lower is better)
Translates to: PLLRRIGVSTLWSSF*TFMCFAECIFGILS
Trigger: GCTCAGAATACCAAAGATACATTCTGCAAAACACATGAAAGTCAAGAAGGAAGACCAAAGTGTGGATACTCCAATCCTTCTTAGAAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACGCCAGCACCATTTTATaGGAATGCTCTCTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYASTIL*ECSLLL
Trigger: GAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGC...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCGCCAGCACCATTTTATaGGAATGCTCTCTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSASTIL*ECSLLL
Trigger: GAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGC...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCGCCAGCACCATTTTATaGGAATGCTCTCTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: TLSSISFSVSGFMWSSLIASTIL*ECSLLL
Trigger: GAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGC...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGAGCTTTGCAATTTTATaGGGTCCCATTTGTCGATTC +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKSFAIL*GPICRF
Trigger: GAATCGACAAATGGGACCTCATAAAATTGCAAAGCT...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTTTGGTCTTCCTTCTTaGCTTTCATGTGTTTTGCAG +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFFGLPS*LSCVLQ
Trigger: CTGCAAAACACATGAAAGTCAAGAAGGAAGACCAAA...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCAGTATTGAACCATACCTaGATCCCTGGGAAGAAGCCA +
Preference number: 2 (lower is better)
Translates to: HFWVFNYITLINLSVTVPVLNHT*IPGKKP
Trigger: TGGCTTCTTCCCAGGGATGCAGGTATGGTTCAATAC...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTGCCTTACAGAAGCTTTaGAATTTTATGAGGTCCCAT +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFALQKL*NFMRSH
Trigger: ATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGC...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACGGGTTAGGAGTTCTCTaGTGGAATAATTGTGGTCAC +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYGLGVL*WNNCGH
Trigger: GTGACCACAATTATTCCACCAGAGAACTCCTAACCC...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGGGAGTATCCACACTTTaGTCTTCCTTCTTGACTTTC +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWGVSTL*SSFLTF
Trigger: GAAAGTCAAGAAGGAAGACCAAAGTGTGGATACTCC...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTCTGCTTGTAATGAGATaGTCATGTGGTTTTTGTCTT +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFLLVMR*SCGFCL
Trigger: AAGACAAAAACCACATGATCATCTCATTACAAGCAG...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGTGGGCCCAGAATTCCTaGTTTTCTAAGACTTTTATC +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWWAQNS*FSKTFI
Trigger: GATAAAAGTCTTAGAAAATCAGGAATTCTGGGCCCA...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGTATGTCCAAATTTTCTaGGGAAATGCCAGATTGATG +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKYVQIF*GNARLM
Trigger: CATCAATCTGGCATTTCCTCAGAAAATTTGGACATA...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTACTGTACCACTACCATaGTGTTATTATCACAATTGC +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFTVPLP*CYYHNC
Trigger: GCAATTGTGATAATAACAGCATGGTAGTGGTACAGT...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGACTGTACCACTACCATaGTGTTATTATCACAATTGC +
Preference number: 2 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKTVPLP*CYYHNC
Trigger: GCAATTGTGATAATAACAGCATGGTAGTGGTACAGT...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGGCCTTACAGAAGCTTTaGAATTTTATGAGGTCCCAT +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWALQKL*NFMRSH
Trigger: ATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGC...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GTTAACAGCCAGTTGAGCCAGCACCATTTTATGAGAATGCTCTCTTCTTCTCCATTTGGTGTTGGGTACTaGTTTGCTGTATATTTCTTT +
Preference number: 2 (lower is better)
Translates to: VNSQLSQHHFMRMLSSSPFGVGY*FAVYFF
Trigger: AAAGAAATATACAGCAAACCAGTACCCAACACCAAA...TGGAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGCTCAACTGGCTGTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTCATTTAGTTTGGTGTTaGGTACTGGTTTGCTGTATA +
Preference number: 2 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFHLVWC*VLVCCI
Trigger: TATACAGCAAACCAGTACCCAACACCAAACTAAATG...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTGTGAGGAATTGAGTTaGAATTTTGATGGGGGTTGC +
Preference number: 2 (lower is better)
Translates to: TLSSISFSVSGFMWSSLICEELS*NFDGGC
Trigger: GCAACCCCCATCAAAATTCCAACTCAATTCCTCACA...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACTGTGAGGAATTGAGTTaGAATTTTGATGGGGGTTGC +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYCEELS*NFDGGC
Trigger: GCAACCCCCATCAAAATTCCAACTCAATTCCTCACA...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCTTCAAGTACTATATTaGATAGGTAGGGAGAAAGTG +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWLQVLY*IGREKV
Trigger: CACTTTCTCCCTACCTATTCAATATAGTACTTGAAG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGAACTCTGTGAGGAATTaGGTTGGAATTTTGATGGGG +
Preference number: 2 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGNSVRN*VGILMG
Trigger: CCCCATCAAAATTCCAACTCAATTCCTCACAGAGTT...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCAGCTTTGCAATTTTATaGGGTCCCATTTGTCGATTC +
Preference number: 2 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSSFAIL*GPICRF
Trigger: GAATCGACAAATGGGACCTCATAAAATTGCAAAGCT...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTTCTTTTGGAACAGATaGTGTGTTCTACTCACCAGT +
Preference number: 2 (lower is better)
Translates to: TLSSISFSVSGFMWSSLIFFWNR*CVLLTS
Trigger: ACTGGTGAGTAGAACACAGCATCTGTTCCAAAAGAA...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACTTCTTTTGGAACAGATaGTGTGTTCTACTCACCAGT +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYFFWNR*CVLLTS
Trigger: ACTGGTGAGTAGAACACAGCATCTGTTCCAAAAGAA...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTAGGGTTGTTTTGATTTaGATTTCCCTGATGACTAAG +
Preference number: 2 (lower is better)
Translates to: CKCTTFSVSIPLLRDIWVRVVLI*ISLMTK
Trigger: CTTAGTCATCAGGGAAATGCAAATCAAAACAACCCT...AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCATTTAGTTTGGTGTTaGGTACTGGTTTGCTGTATA +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWHLVWC*VLVCCI
Trigger: TATACAGCAAACCAGTACCCAACACCAAACTAAATG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCATCTCTCCATTTAGTTTaGTGTTGGGTACTGGTTTGC +
Preference number: 2 (lower is better)
Translates to: HFWVFNYITLINLSVTVPSLHLV*CWVLVC
Trigger: GCAAACCAGTACCCAACACCAAACTAAATGGAGAGA...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGTCTCTCCATTTAGTTTaGTGTTGGGTACTGGTTTGC +
Preference number: 2 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGSLHLV*CWVLVC
Trigger: GCAAACCAGTACCCAACACCAAACTAAATGGAGAGA...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGTTAGGAGTTCTCTGGTaGAATAATTGTGGTCACTTA +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWLGVLW*NNCGHL
Trigger: TAAGTGACCACAATTATTCCACCAGAGAACTCCTAA...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGTGTGAGGAATTGAGTTaGAATTTTGATGGGGGTTGC +
Preference number: 2 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGCEELS*NFDGGC
Trigger: GCAACCCCCATCAAAATTCCAACTCAATTCCTCACA...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGGTCTCTGGTTTTATGTaGAGTTCCTTGATCTACTTA +
Preference number: 2 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWVSGFM*SSLIYL
Trigger: TAAGTAGATCAAGGAACTCCACATAAAACCAGAGAC...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTaGATCTACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGA +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSS*IYLDLSFVQGDKNG
Trigger: TCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 90 bp TCTATCAGATTTAGGATTGGTAAAGAGCATTTCACATTCTGTTGGTaGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCT +
Preference number: 2 (lower is better)
Translates to: SIRFRIGKEHFTFCW*PFCLIDSVLCLTEA
Trigger: AGCTTCTGTAAGGCAAAGGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAAATCTGATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR TCA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCCTGCTTGTAATGAGATaGTCATGTGGTTTTTGTCTT +
Preference number: 2 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSLLVMR*SCGFCL
Trigger: AAGACAAAAACCACATGATCATCTCATTACAAGCAG...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACACTGTACCACTACCATaGTGTTATTATCACAATTGC +
Preference number: 2 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYTVPLP*CYYHNC
Trigger: GCAATTGTGATAATAACAGCATGGTAGTGGTACAGT...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CCA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCGTCTCTGGTTTTATGTaGAGTTCCTTGATCTACTTA +
Preference number: 2 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSVSGFM*SSLIYL
Trigger: TAAGTAGATCAAGGAACTCCACATAAAACCAGAGAC...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR GCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGAATTTTCTGAGGAAATaGCAGATTGATGTCCAGAGT +
Preference number: 2 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGNFLRK*QIDVQS
Trigger: ACTCTGGACATCAATCTGGCATTTCCTCAGAAAATT...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp GCTATCCTGAAAGTTCCCTATACCCTCCCTCCGCCCTaGTCCCCTACCACCCACTCCCGCTTCTTGGCCCTA +
Preference number: 3 (lower is better)
Translates to: AILKVPYTLPPP*SPTTHSRFLAL
Trigger: TAGGGCCAAGAAGCGGGAGTGGGTGGTAGGGGAGCAGGGCGGAGGGAGGGTATAGGGAACTTTCAGGATAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTCTCTAGCTCCTTCATaGGGGACCCTGTGTTCCGTC +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLSLAPS*GTLCSV
Trigger: GACGGAACACAGGGTCCCCAATGAAGGAGCTAGAGA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTGCCCAGGAGAGGTATaGCTGATAGTGCTATGTCCA +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLCPGEV*LIVLCP
Trigger: TGGACATAGCACTATCAGCAATACCTCTCCTGGGCA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp CCAGTCTGGCCTCAAACTCAGAAATCCACCTGTCTCTaGCTTCCAAGTGCTGGGATTAAAGGTGTGCACCAA +
Preference number: 3 (lower is better)
Translates to: PVWPQTQKSTCL*LPSAGIKGVHQ
Trigger: TTGGTGCACACCTTTAATCCCAGCACTTGGAAGGCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TTAATCCTGCTTCTTGGCCCAGACATTCCTCTATACTaGGGCATAGAACCTTCACAGGACCTCTCCTCCCAC +
Preference number: 3 (lower is better)
Translates to: LILLLGPDIPLY*GIEPSQDLSSH
Trigger: GTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCTGGGCCAAGAAGCAGGATTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp TCCCGCTTCTTGGCCCTAGCATTCTCCTATAAAGTTTaGAATACAGGGTTTCTCTGTAGAGCCCTGGCTGTC +
Preference number: 3 (lower is better)
Translates to: SRFLALAFSYKV*NTGFLCRALAV
Trigger: GACAGCCAGGGCTCTACAGAGAAACCCTGTATTGCAAACTTTATAGGAGAATGCTAGGGCCAAGAAGCGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp ATGGGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTaGTCCACACTTTGTCCCTGCAAATCCTTCCATGGA +
Preference number: 3 (lower is better)
Translates to: MGQSLDRHSFSL*STLCPCKSFHG
Trigger: TCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGCCATTTAGTTTGGTGTaGGGTACTGGTTTGCTGTAT +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLPFSLV*GTGLLY
Trigger: ATACAGCAAACCAGTACCCAACACCAAACTAAATGG...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTTGTGTTACCTCACCTaGGATGATATTCTGCAGATC +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLLCYLT*DDILQI
Trigger: GATCTGCAGAATATCATCCAAGGTGAGGTAACACAA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCTGGGAAGAAGCCAACTaGATCATGATGAATGTTTCT +
Preference number: 3 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCWEEAN*IMMNVS
Trigger: AGAAACATTCATCATGATCAAGTTGGCTTCTTCCCA...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGTGCCATTTTGTCTTATaGACAGTGTCCTTTGCCTTA +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLCHFVL*TVSFAL
Trigger: TAAGGCAAAGGACACTGTCAATAAGACAAAATGGCA...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGCTTTGGTCTTCCTTCTaGACTTTCATGTGTTTTGCA +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLLWSSF*TFMCFA
Trigger: TGCAAAACACATGAAAGTCAAGAAGGAAGACCAAAG...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGGATaGATCCCCAGATGGGACAGTCTCTGGATCGTCATT +
Preference number: 3 (lower is better)
Translates to: CNSVCVWWLFMG*IPRWDSLWIVI
Trigger: AATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACCACCAAACACAGACACTATTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTATGTATTTCCATGTATaGAACCATACCTGCATCCCT +
Preference number: 3 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLMYFHV*NHTCIP
Trigger: AGGGATGCAGGTATGGTTCAATACATGGAAATACAT...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAACAGGTTTTGGATTTaGTCAAATGCTTTCTCTGCT +
Preference number: 3 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCNRFWI*SNAFSA
Trigger: AGCAGAGAAAGCATTTGACAAAATCCAAAACCTGTT...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGGAGACTTTCCATCTTTaGAGATCTTCTTCGATTTCT +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLETFHL*RSSSIS
Trigger: AGAAATCGAAGAAGATCTCAAAAGATGGAAAGTCTC...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTGCCATTTTGTCTTATaGACAGTGTCCTTTGCCTTA +
Preference number: 3 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLCHFVL*TVSFAL
Trigger: TAAGGCAAAGGACACTGTCAATAAGACAAAATGGCA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGCTGTGTAGTACTCCATaGTGTAAATGTACCACATTT +
Preference number: 3 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLLCSTP*CKCTTF
Trigger: AAATGTGGTACATTTACACAATGGAGTACTACACAG...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp CGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTaGAAATCCTTCCATGGATATTTTGTTCCCCCTTCT +
Preference number: 3 (lower is better)
Translates to: RHSFSLCSTLCP*KSFHGYFVPPS
Trigger: AGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTAACAGGTTTTGGATTTaGTCAAATGCTTTCTCTGCT +
Preference number: 3 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLNRFWI*SNAFSA
Trigger: AGCAGAGAAAGCATTTGACAAAATCCAAAACCTGTT...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTGAGACTTTCCATCTTTaGAGATCTTCTTCGATTTCT +
Preference number: 3 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLETFHL*RSSSIS
Trigger: AGAAATCGAAGAAGATCTCAAAAGATGGAAAGTCTC...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGTGCCCAGGAGAGGTATaGCTGATAGTGCTATGTCCA +
Preference number: 3 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWCPGEV*LIVLCP
Trigger: TGGACATAGCACTATCAGCAATACCTCTCCTGGGCA...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTCCTACTGCACTGAAGTaGTTTATCAGGGTTAGGAGT +
Preference number: 3 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFPTALK*FIRVRS
Trigger: ACTCCTAACCCTGATAAACAACTTCAGTGCAGTAGG...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGGGCTTTTCCCCCACTTaGTCCTCTATAAGTTTCAGT +
Preference number: 3 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKGFSPT*SSISFS
Trigger: ACTGAAACTTATAGAGGACAAAGTGGGGGAAAAGCC...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp GTCACTGTACCACTACCATGCTGTTATTATCACAATTaGTCTGTAGTACAGCTTGAGGTTGGTGATGGTGAT +
Preference number: 3 (lower is better)
Translates to: VTVPLPCCYYHN*SVVQLEVGDGD
Trigger: ATCACCATCACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCATGGTAGTGGTACAGTGAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TGCTGTTATTATCACAATTGCTCTGTAGTACAGCTTGAGGTTGGTGATGGTGATCCTACTGCACTGAAGTaGTTTATCAGGGTTAGGAGT +
Preference number: 3 (lower is better)
Translates to: CCYYHNCSVVQLEVGDGDPTALK*FIRVRS
Trigger: ACTCCTAACCCTGATAAACAACTTCAGTGCAGTAGG...ATCACCATCACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGTTACAGCCCAAGCCATaGCTGTTATGTTCAGGAATT +
Preference number: 3 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKLQPKP*LLCSGI
Trigger: AATTCCTGAACATAACAGCAATGGCTTGGGCTGTAA...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTAATCCCAGGGTTGTTTaGATTTGCATTTCCCTGATG +
Preference number: 3 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFNPRVV*ICISLM
Trigger: CATCAGGGAAATGCAAATCAAAACAACCCTGGGATT...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGAATCCCAGGGTTGTTTaGATTTGCATTTCCCTGATG +
Preference number: 3 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKNPRVV*ICISLM
Trigger: CATCAGGGAAATGCAAATCAAAACAACCCTGGGATT...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 72 bp GCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTaGTCTTACAGCCCAAGCCATTGCTGTTATGTTCAG +
Preference number: 3 (lower is better)
Translates to: ALQFYEVPFVDS*SYSPSHCCYVQ
Trigger: CTGAACATAACAGCAATGGCTTGGGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 72 bp AGTGCTATGTCCAAATTTTCTGAGGAAATGCCAGATTaGTGTCCAGAGTGTTTGTACCAGATTGCAATCCCA +
Preference number: 3 (lower is better)
Translates to: SAMSKFSEEMPD*CPECLYQIAIP
Trigger: TGGGATTGCAATCTGGTACAAACACTCTGGACATCAATCTGGCATTTCCTCAGAAAATTTGGACATAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 72 bp GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTaGGGGACATCTGGGTTCTTTCCACCTTCTTGCTAT +
Preference number: 3 (lower is better)
Translates to: VNVPHFLYPFLC*GTSGFFPPSCY
Trigger: ATAGCAAGAAGGTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp AATGCCAGATTGATGTCCAGAGTGTTTGTACCAGATTaGAATCCCACCAATAATGGAGGAGTATACCTCTTT +
Preference number: 3 (lower is better)
Translates to: NARLMSRVFVPD*NPTNNGGVYLF
Trigger: AAAGAGGTATACTCCTCCATTATTGGTGGGATTGCAATCTGGTACAAACACTCTGGACATCAATCTGGCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp CACACTTTGGTCTTCCTTCTTGACTTTCATGTGTTTTaGAGAATGTATCTTTGGTATTCTGAGCTTCTGGGC +
Preference number: 3 (lower is better)
Translates to: HTLVFLLDFHVF*RMYLWYSELLG
Trigger: GCCCAGAAGCTCAGAATACCAAAGATACATTCTGCAAAACACATGAAAGTCAAGAAGGAAGACCAAAGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TGCTGTTATTATCACAATTGCTCTGTAGTACAGCTTGAGGTTGGTGATGGTGATCCATTTAGTTTGGTGTaGGGTACTGGTTTGCTGTAT +
Preference number: 3 (lower is better)
Translates to: CCYYHNCSVVQLEVGDGDPFSLV*GTGLLY
Trigger: ATACAGCAAACCAGTACCCAACACCAAACTAAATGG...ATCACCATCACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCCCTACTGCACTGAAGTaGTTTATCAGGGTTAGGAGT +
Preference number: 3 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSPTALK*FIRVRS
Trigger: ACTCCTAACCCTGATAAACAACTTCAGTGCAGTAGG...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGTTGTGTTACCTCACCTaGGATGATATTCTGCAGATC +
Preference number: 3 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWLCYLT*DDILQI
Trigger: GATCTGCAGAATATCATCCAAGGTGAGGTAACACAA...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TGCTGTTATTATCACAATTGCTCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTGGGAAGAAGCCAACTaGATCATGATGAATGTTTCT +
Preference number: 3 (lower is better)
Translates to: CCYYHNCSVVQLEVGDGDWEEAN*IMMNVS
Trigger: AGAAACATTCATCATGATCAAGTTGGCTTCTTCCCA...ATCACCATCACCAACCTCAAGCTGTACTACAGAGCAATTGTGATAATAACAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTGAGACTTTCCATCTTTaGAGATCTTCTTCGATTTCT +
Preference number: 3 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFETFHL*RSSSIS
Trigger: AGAAATCGAAGAAGATCTCAAAAGATGGAAAGTCTC...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTTTTATGTGGAGTTCCTaGATCTACTTAGACTTGAGC +
Preference number: 3 (lower is better)
Translates to: CKCTTFSVSIPLLRDIWVFMWSS*IYLDLS
Trigger: GCTCAAGTCTAAGTAGATCAAGGAACTCCACATAAA...AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGTTCACATTCTGTTGGTaGCCATTTTGTCTTATTGAC +
Preference number: 3 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKFTFCW*PFCLID
Trigger: GTCAATAAGACAAAATGGCAACCAACAGAATGTGAA...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTGCATTTCACATTCTGTaGGTTGCCATTTTGTCTTAT +
Preference number: 3 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFAFHIL*VAILSY
Trigger: ATAAGACAAAATGGCAACCAACAGAATGTGAAATGC...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGCTTTGGTCTTCCTTCTaGACTTTCATGTGTTTTGCA +
Preference number: 3 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWLWSSF*TFMCFA
Trigger: TGCAAAACACATGAAAGTCAAGAAGGAAGACCAAAG...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 72 bp CTTTCATGTGTTTTGCAGAATGTATCTTTGGTATTCTaGGCTTCTGGGCTAATATCCACTTACCAGTCAGTG +
Preference number: 3 (lower is better)
Translates to: LSCVLQNVSLVF*ASGLISTYQSV
Trigger: CACTGACTGGTAAGTGGATATTAGCCCAGAAGCTCAGAATACCAAAGATACATTCTGCAAAACACATGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp ACATTGATCAACCTGTCTGTCACTGTACCACTACCATaGTGTTATTATCACAATTGCTCTGTAGTACAGCTT +
Preference number: 3 (lower is better)
Translates to: TLINLSVTVPLP*CYYHNCSVVQL
Trigger: AAGCTGTACTACAGAGCAATTGTGATAATAACAGCATGGTAGTGGTACAGTGACAGACAGGTTGATCAATGT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp TTGCTGATAGTGCTATGTCCAAATTTTCTGAGGAAATaGCAGATTGATGTCCAGAGTGTTTGTACCAGATTG +
Preference number: 3 (lower is better)
Translates to: LLIVLCPNFLRK*QIDVQSVCTRL
Trigger: CAATCTGGTACAAACACTCTGGACATCAATCTGGCATTTCCTCAGAAAATTTGGACATAGCACTATCAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp CTTCCAAGTGCTGGGATTAAAGGTGTGCACCAACACTaGCCGGCTTTGTTAGATATATTCTTAATTTACATT +
Preference number: 3 (lower is better)
Translates to: LPSAGIKGVHQH*PALLDIFLIYI
Trigger: AATGTAAATTAAGAATATATCTAACAAAGCCGGGCAGTGTTGGTGCACACCTTTAATCCCAGCACTTGGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp GATGTATTTCCATGTATTGAACCATACCTGCATCCCTaGGAAGAAGCCAACTTGATCATGATGAATGTTTCT +
Preference number: 3 (lower is better)
Translates to: DVFPCIEPYLHP*EEANLIMMNVS
Trigger: AGAAACATTCATCATGATCAAGTTGGCTTCTTCCCAGGGATGCAGGTATGGTTCAATACATGGAAATACATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TTCCCCCACTTTGTCCTCTATAAGTTTCAGTGTCTCTaGTTTTATGTGGAGTTCCTTGATCTACTTAGACTT +
Preference number: 3 (lower is better)
Translates to: FPHFVLYKFQCL*FYVEFLDLLRL
Trigger: AAGTCTAAGTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGTGGGGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TTCCATGGATATTTTGTTCCCCCTTCTAAGAAGGATTaGAGTATCCACACTTTGGTCTTCCTTCTTGACTTT +
Preference number: 3 (lower is better)
Translates to: FHGYFVPPSKKD*SIHTLVFLLDF
Trigger: AAAGTCAAGAAGGAAGACCAAAGTGTGGATACTCCAATCCTTCTTAGAAGGGGGAACAAAATATCCATGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTAACAGGTTTTGGATTTaGTCAAATGCTTTCTCTGCT +
Preference number: 3 (lower is better)
Translates to: CKCTTFSVSIPLLRDIWVNRFWI*SNAFSA
Trigger: AGCAGAGAAAGCATTTGACAAAATCCAAAACCTGTT...AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCTTTATGTGGAGTTCCTaGATCTACTTAGACTTGAGC +
Preference number: 3 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSFMWSS*IYLDLS
Trigger: GCTCAAGTCTAAGTAGATCAAGGAACTCCACATAAA...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp GTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTaGAATTTTATGAGGTCCCATTTGTCGATTCTTGAT +
Preference number: 3 (lower is better)
Translates to: VLLTVSFALQKL*NFMRSHLSILD
Trigger: ATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TGTTTTGCAGAATGTATCTTTGGTATTCTGAGCTTCTaGGCTAATATCCACTTACCAGTCAGTGCATATCAT +
Preference number: 3 (lower is better)
Translates to: CFAECIFGILSF*ANIHLPVSAYH
Trigger: ATGATATGCACTGACTGGTAAGTGGATATTAGCCCAGAAGCTCAGAATACCAAAGATACATTCTGCAAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCATGGGAAGAAGCCAACTaGATCATGATGAATGTTTCT +
Preference number: 3 (lower is better)
Translates to: HFWVFNYITLINLSVTVPWEEAN*IMMNVS
Trigger: AGAAACATTCATCATGATCAAGTTGGCTTCTTCCCA...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR-3UTR CAA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCAATGTATTTCCATGTATaGAACCATACCTGCATCCCT +
Preference number: 3 (lower is better)
Translates to: HFWVFNYITLINLSVTVPMYFHV*NHTCIP
Trigger: AGGGATGCAGGTATGGTTCAATACATGGAAATACAT...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR TCA 72 bp GTGAGTTCTTTTGTGATTGTGTTACCTCACCTTGGATaGTATTCTGCAGATCCACCCATTTATCTAAGAATT +
Preference number: 3 (lower is better)
Translates to: VSSFVIVLPHLG*YSADPPIYLRI
Trigger: AATTCTTAGATAAATGGGTGGATCTGCAGAATATCATCCAAGGTGAGGTAACACAATCACAAAAGAACTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR GCA 72 bp TTAGGATTGGTAAAGAGCATTTCACATTCTGTTGGTTaGCATTTTGTCTTATTGACAGTGTCCTTTGCCTTA +
Preference number: 3 (lower is better)
Translates to: LGLVKSISHSVG*HFVLLTVSFAL
Trigger: TAAGGCAAAGGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp TTAGTGGGATTGCTTCAAGTTTCTCTCCATTTAGTTTaGTGTTGGGTACTGGTTTGCTGTATATTTCTTTTA +
Preference number: 3 (lower is better)
Translates to: LVGLLQVSLHLV*CWVLVCCIFLL
Trigger: TAAAAGAAATATACAGCAAACCAGTACCCAACACCAAACTAAATGGAGAGAAACTTGAAGCAATCCCACTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CCA 72 bp AAAGATCAAGTGAGCATAGGTGTGTCAATTCATTTCTaGGTCTTCAATTATATTACATTGATCAACCTGTCT +
Preference number: 3 (lower is better)
Translates to: KDQVSIGVSIHF*VFNYITLINLS
Trigger: AGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATGAATTGACACACCTATGCTCACTTGATCTTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGAATTCAGATCCAAAGTaGCATGATGCTGGCACAGAC +
Preference number: 4 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLNSDPK*HDAGTD
Trigger: GTCTGTGCCAGCATCATGCCACTTTGGATCTGAATT...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTATGAGCAGTATTTGCTaGTCTTCATTTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLMSSIC*SSFGWC
Trigger: ACACCAACCAAATGAAGATCAGCAAATACTGCTCAT...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCATTGCTTCTGATGTCTaGACAATAAAAGCACCATGT +
Preference number: 4 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCIASDV*TIKAPC
Trigger: ACATGGTGCTTTTATTGTTCAGACATCAGAAGCAAT...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTTGCTGATCTTCATTTaGTTGGTGTCACTCACATTG +
Preference number: 4 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLLLIFI*LVSLTL
Trigger: CAATGTGAGTGACACCAACCAAATGAAGATCAGCAA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp TCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTCCACCAGAGGCTCTTTCATTAATTCAGATCCAAAGTaGCATGATGCTGGCACAGAC +
Preference number: 4 (lower is better)
Translates to: SVVQLEVGDGDSTRGSFINSDPK*HDAGTD
Trigger: GTCTGTGCCAGCATCATGCCACTTTGGATCTGAATT...AATGAAAGAGCCTCTGGTGGAATCACCATCACCAACCTCAAGCTGTACTACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp GTTAACAGCCAGTTGAGCCAGCACCATTTTATGAGAATGCTCTCTTCTTCTCCATTCCTCCAGAGACAGTaGGACTGTCCACTGAATTCA +
Preference number: 4 (lower is better)
Translates to: VNSQLSQHHFMRMLSSSPFLQRQ*DCPLNS
Trigger: TGAATTCAGTGGACAGTCCCACTGTCTCTGGAGGAA...TGGAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGCTCAACTGGCTGTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp ATTGAACCATACCTGCATCCCTGGGAAGAAGCCAACTaGATCATGATGAATGTTTCTGTGCTCCAGCTTTCC +
Preference number: 4 (lower is better)
Translates to: IEPYLHPWEEAN*IMMNVSVLQLS
Trigger: GGAAAGCTGGAGCACAGAAACATTCATCATGATCAAGTTGGCTTCTTCCCAGGGATGCAGGTATGGTTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp TTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTTCCTCCAGAGACAGTaGGACTGTCCACTGAATTCA +
Preference number: 4 (lower is better)
Translates to: FLQSLLHTLSLQILPWIFFLQRQ*DCPLNS
Trigger: TGAATTCAGTGGACAGTCCCACTGTCTCTGGAGGAA...AAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp CCACACTTTGTCCCTGCAAATCCTTCCATGGATATTTaGTTCCCCCTTCTAAGAAGGATTGGAGTATCCACA +
Preference number: 4 (lower is better)
Translates to: PHFVPANPSMDI*FPLLRRIGVST
Trigger: TGTGGATACTCCAATCCTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp TCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTCCACCAGAGGCTCTTTCATTATGAGCAGTATTTGCTaGTCTTCATTTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: SVVQLEVGDGDSTRGSFIMSSIC*SSFGWC
Trigger: ACACCAACCAAATGAAGATCAGCAAATACTGCTCAT...AATGAAAGAGCCTCTGGTGGAATCACCATCACCAACCTCAAGCTGTACTACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp TCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTCCACCAGAGGCTCTTTCATTTGCTTGCATTGCTTCTaGTGTCTGAACAATAAAAGC +
Preference number: 4 (lower is better)
Translates to: SVVQLEVGDGDSTRGSFICLHCF*CLNNKS
Trigger: GCTTTTATTGTTCAGACATCAGAAGCAATGCAAGCA...AATGAAAGAGCCTCTGGTGGAATCACCATCACCAACCTCAAGCTGTACTACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR GCA 90 bp TCTGTAGTACAGCTTGAGGTTGGTGATGGTGATTCCACCAGAGGCTCTTTCATTCTTTTTCTCAGGAGATaGTCTCCAGTAATTGATGCT +
Preference number: 4 (lower is better)
Translates to: SVVQLEVGDGDSTRGSFILFLRR*SPVIDA
Trigger: AGCATCAATTACTGGAGAGCATCTCCTGAGAAAAAG...AATGAAAGAGCCTCTGGTGGAATCACCATCACCAACCTCAAGCTGTACTACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp GCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTaGTCGATTCTTGATCTTACAGCCCAAGCCATTGCT +
Preference number: 4 (lower is better)
Translates to: ALQKLCNFMRSH*SILDLTAQAIA
Trigger: AGCAATGGCTTGGGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp GCTCTTGTTAGTGCAATATCTGCAATAGTGTCTGTGTTTGGTGGTTGTTTATGGAATTCAGATCCAAAGTaGCATGATGCTGGCACAGAC +
Preference number: 4 (lower is better)
Translates to: ALVSAISAIVSVFGGCLWNSDPK*HDAGTD
Trigger: GTCTGTGCCAGCATCATGCCACTTTGGATCTGAATT...CCATAAACAACCACCAAACACAGACACTATTGCAGATATTGCACTAACAAGAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACTTCCTCCAGAGACAGTaGGACTGTCCACTGAATTCA +
Preference number: 4 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYFLQRQ*DCPLNS
Trigger: TGAATTCAGTGGACAGTCCCACTGTCTCTGGAGGAA...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TTGGAACATATTCTGGGTACATGCCCAGGAGAGGTATaGCTGATAGTGCTATGTCCAAATTTTCTGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LEHILGTCPGEV*LIVLCPNFLRK
Trigger: TTTCCTCAGAAAATTTGGACATAGCACTATCAGCAATACCTCTCCTGGGCATGTACCCAGAATATGTTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTaGAGGGACATCTGGGTTCTTTCCACCTTCTTGCTA +
Preference number: 4 (lower is better)
Translates to: CKCTTFSVSIPL*RDIWVLSTFLL
Trigger: TAGCAAGAAGGTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACTGGTGTCACTCACATTaGTATAAGCACCAGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYWCHSH*YKHQQR
Trigger: TCTCTGCTGGTGCTTATACCAATGTGAGTGACACCA...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACCACTTGTTGTCACCATaGCTCCTACAAGAAACACAT +
Preference number: 4 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYHLLSP*LLQETH
Trigger: ATGTGTTTCTTGTAGGAGTCATGGTGACAACAAGTG...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTGTTGTCACCATaGCTCCTACAAGAAACACAT +
Preference number: 4 (lower is better)
Translates to: TLSSISFSVSGFMWSSLIHLLSP*LLQETH
Trigger: ATGTGTTTCTTGTAGGAGTCATGGTGACAACAAGTG...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR GCA 90 bp ACACTTTGTCCCTGCAAATCCTTCCATGGATATTTTGTTCCCCCTTCTAAGAAGAAGCCAAATATCCCCTaGAGTAAGGAACATCATTAT +
Preference number: 4 (lower is better)
Translates to: TLCPCKSFHGYFVPPSKKKPNIP*SKEHHY
Trigger: ATAATGATGTTCCTTACTGCAGGGGATATTTGGCTT...CTTCTTAGAAGGGGGAACAAAATATCCATGGAAGGATTTGCAGGGACAAAGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGTGGTGTCACTCACATTaGTATAAGCACCAGCAGAGA +
Preference number: 4 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGWCHSH*YKHQQR
Trigger: TCTCTGCTGGTGCTTATACCAATGTGAGTGACACCA...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTATTGCTTCTGATGTCTaGACAATAAAAGCACCATGT +
Preference number: 4 (lower is better)
Translates to: CKCTTFSVSIPLLRDIWVIASDV*TIKAPC
Trigger: ACATGGTGCTTTTATTGTTCAGACATCAGAAGCAAT...AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACTGCTTGCATTGCTTCTaGTGTCTGAACAATAAAAGC +
Preference number: 4 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYCLHCF*CLNNKS
Trigger: GCTTTTATTGTTCAGACATCAGAAGCAATGCAAGCA...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR GCA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACCTTTTTCTCAGGAGATaGTCTCCAGTAATTGATGCT +
Preference number: 4 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYLFLRR*SPVIDA
Trigger: AGCATCAATTACTGGAGAGCATCTCCTGAGAAAAAG...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp GTAAAGAGCATTTCACATTCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCTTGCTGATCTTCATTTaGTTGGTGTCACTCACATTG +
Preference number: 4 (lower is better)
Translates to: VKSISHSVGCHFVLLTVSLLIFI*LVSLTL
Trigger: CAATGTGAGTGACACCAACCAAATGAAGATCAGCAA...GGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TGGATCAATTCAAATTCTTCACATGTTAACAGCCAGTaGAGCCAGCACCATTTTATGAGAATGCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: WINSNSSHVNSQ*SQHHFMRMLSS
Trigger: AGAAGAGAGCATTCTCATAAAATGGTGCTGGCTCAACTGGCTGTTAACATGTGAAGAATTTGAATTGATCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TACTTGTTAGTTCATATTGTTGTTTCTCCTATGGTGTaGCAAATCCCTTCAGCTCCTTGGGTACTTTCTCTA +
Preference number: 4 (lower is better)
Translates to: YLLVHIVVSPMV*QIPSAPWVLSL
Trigger: TAGAGAAAGTACCCAAGGAGCTGAAGGGATTTGCAACACCATAGGAGAAACAACAATATGAACTAACAAGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp GCTATGAACATAGTGGAGCATTTTTCCTTATTACAAGTTGGAACATATTCTGGGATGAGCAGTATTTGCTaGTCTTCATTTGGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: AMNIVEHFSLLQVGTYSGMSSIC*SSFGWC
Trigger: ACACCAACCAAATGAAGATCAGCAAATACTGCTCAT...CCCAGAATATGTTCCAACTTGTAATAAGGAAAAATGCTCCACTATGTTCATAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR TCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCATGCTTGCATTGCTTCTaGTGTCTGAACAATAAAAGC +
Preference number: 4 (lower is better)
Translates to: HFWVFNYITLINLSVTVPCLHCF*CLNNKS
Trigger: GCTTTTATTGTTCAGACATCAGAAGCAATGCAAGCA...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR GCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCACTTTTTCTCAGGAGATaGTCTCCAGTAATTGATGCT +
Preference number: 4 (lower is better)
Translates to: HFWVFNYITLINLSVTVPLFLRR*SPVIDA
Trigger: AGCATCAATTACTGGAGAGCATCTCCTGAGAAAAAG...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCATTGCTGATCTTCATTTaGTTGGTGTCACTCACATTG +
Preference number: 4 (lower is better)
Translates to: HFWVFNYITLINLSVTVPLLIFI*LVSLTL
Trigger: CAATGTGAGTGACACCAACCAAATGAAGATCAGCAA...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TTTAGGATTGGTAAAGAGCATTTCACATTCTGTTGGTaGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: FRIGKEHFTFCW*PFCLIDSVLCL
Trigger: AAGGCAAAGGACACTGTCAATAAGACAAAATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR GCA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCAAAGCCAAATATCCCCTaGAGTAAGGAACATCATTAT +
Preference number: 4 (lower is better)
Translates to: HFWVFNYITLINLSVTVPKPNIP*SKEHHY
Trigger: ATAATGATGTTCCTTACTGCAGGGGATATTTGGCTT...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TTTAGTGGGATTGCTTCAAGTTTCTCTCCATTTAGTTaGGTGTTGGGTACTGGTTTGCTGTATATTTCTTTT +
Preference number: 4 (lower is better)
Translates to: FSGIASSFSPFS*VLGTGLLYISF
Trigger: AAAAGAAATATACAGCAAACCAGTACCCAACACCAAACTAAATGGAGAGAAACTTGAAGCAATCCCACTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
3UTR CAA 72 bp TATATGTTGGATATTAGCCCTCTATCAGATTTAGGATaGGTAAAGAGCATTTCACATTCTGTTGGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: YMLDISPLSDLG*VKSISHSVGCH
Trigger: ATGGCAACCAACAGAATGTGAAATGCTCTTTACCAATCCTAAATCTGATAGAGGGCTAATATCCAACATATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp GGTTGTTTATGGGATGGATCCCCAGATGGGACAGTCTCTGGATCGTCATTCCTTTTTGCTGATCTTCATTaGGTTGGTGTCACTCACATT +
Preference number: 5 (lower is better)
Translates to: GCLWDGSPDGTVSGSSFLFADLH*VGVTHI
Trigger: AATGTGAGTGACACCAACCAAATGAAGATCAGCAAA...AAGGAATGACGATCCAGAGACTGTCCCATCTGGGGATCCATCCCATAAACAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp GGACAGTCTCTGGATCGTCATTCCTTCAGTCTTTGCTCCACACTTTGTCCCTGCAATCCCCTGATAATTTaGTTTGTGGGAAAGTATGAG +
Preference number: 5 (lower is better)
Translates to: GQSLDRHSFSLCSTLCPCNPLII*FVGKYE
Trigger: CTCATACTTTCCCACAAACAAAATTATCAGGGGATT...GCAGGGACAAAGTGTGGAGCAAAGACTGAAGGAATGACGATCCAGAGACTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp AGACATTCCTCTATACTGGGGCATAGAACCTTCACAGGACCTCTCCTCCCACTGAATCCCCTGATAATTTaGTTTGTGGGAAAGTATGAG +
Preference number: 5 (lower is better)
Translates to: RHSSILGHRTFTGPLLPLNPLII*FVGKYE
Trigger: CTCATACTTTCCCACAAACAAAATTATCAGGGGATT...CAGTGGGAGGAGAGGTCCTGTGAAGGTTCTATGCCCCAGTATAGAGGAATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp GTTAACAGCCAGTTGAGCCAGCACCATTTTATGAGAATGCTCTCTTCTTCTCCAATGAAGATGCTTGCATaGCTTCTGATGTCTGAACAA +
Preference number: 5 (lower is better)
Translates to: VNSQLSQHHFMRMLSSSPMKMLA*LLMSEQ
Trigger: TTGTTCAGACATCAGAAGCAATGCAAGCATCTTCAT...TGGAGAAGAAGAGAGCATTCTCATAAAATGGTGCTGGCTCAACTGGCTGTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTTTTGCTGATCTTCATTaGGTTGGTGTCACTCACATT +
Preference number: 5 (lower is better)
Translates to: CKCTTFSVSIPLLRDIWVFADLH*VGVTHI
Trigger: AATGTGAGTGACACCAACCAAATGAAGATCAGCAAA...AACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCATCAGTAGAAACATATaGGCTAGAACTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: TLSSISFSVSGFMWSSLIISRNI*ARTPSP
Trigger: TGGACTTGGAGTTCTAGCCAATATGTTTCTACTGAT...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACATCAGTAGAAACATATaGGCTAGAACTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYISRNI*ARTPSP
Trigger: TGGACTTGGAGTTCTAGCCAATATGTTTCTACTGAT...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp TTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTACATGAAGATGCTTGCATaGCTTCTGATGTCTGAACAA +
Preference number: 5 (lower is better)
Translates to: LSSISFSVSGFMWSSLIYMKMLA*LLMSEQ
Trigger: TTGTTCAGACATCAGAAGCAATGCAAGCATCTTCAT...GTAGATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp ACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCATGAAGATGCTTGCATaGCTTCTGATGTCTGAACAA +
Preference number: 5 (lower is better)
Translates to: TLSSISFSVSGFMWSSLIMKMLA*LLMSEQ
Trigger: TTGTTCAGACATCAGAAGCAATGCAAGCATCTTCAT...GATCAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGACAAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS-3UTR CAA 90 bp CATTTCTGGGTCTTCAATTATATTACATTGATCAACCTGTCTGTCACTGTACCAATCAGTAGAAACATATaGGCTAGAACTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: HFWVFNYITLINLSVTVPISRNI*ARTPSP
Trigger: TGGACTTGGAGTTCTAGCCAATATGTTTCTACTGAT...TGGTACAGTGACAGACAGGTTGATCAATGTAATATAATTGAAGACCCAGAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS CCA 72 bp AGTGGACCTGTATGGTGGAGATTCCTCCAGAGACAGTaGGACTGTCCACTGAATTCAGATCCAAAGTGGCAT +
Preference number: 6 (lower is better)
Translates to: SGPVWWRFLQRQ*DCPLNSDPKWH
Trigger: ATGCCACTTTGGATCTGAATTCAGTGGACAGTCCCACTGTCTCTGGAGGAATCTCCACCATACAGGTCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049694.4
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS CCA 72 bp AGACAGTGGGACTGTCCACTGAATTCAGATCCAAAGTaGCATGATGCTGGCACAGACCGGAGGAATAAATAT +
Preference number: 6 (lower is better)
Translates to: RQWDCPLNSDPK*HDAGTDRRNKY
Trigger: ATATTTATTCCTCCGGTCTGTGCCAGCATCATGCCACTTTGGATCTGAATTCAGTGGACAGTCCCACTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049694.4
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS TCA 72 bp GTGTGGCCTTTTTCTCAGGAGATGCTCTCCAGTAATTaGTGCTATGAAGATGCTTGCATTGCTTCTGATGTC +
Preference number: 6 (lower is better)
Translates to: VWPFSQEMLSSN*CYEDACIASDV
Trigger: GACATCAGAAGCAATGCAAGCATCTTCATAGCATCAATTACTGGAGAGCATCTCCTGAGAAAAAGGCCACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049694.4
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS CAA 72 bp CTGATAATTTTGTTTGTGGGAAAGTATGAGCAGTATTaGCTGATCTTCATTTGGTTGGTGTCACTCACATTG +
Preference number: 6 (lower is better)
Translates to: LIILFVGKYEQY*LIFIWLVSLTL
Trigger: CAATGTGAGTGACACCAACCAAATGAAGATCAGCAAATACTGCTCATACTTTCCCACAAACAAAATTATCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049694.4
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2
CDS CAA 72 bp AAAGTTGTCACTGTTAAAATCAATCCCCTGATAATTTaGTTTGTGGGAAAGTATGAGCAGTATTTGCTGATC +
Preference number: 6 (lower is better)
Translates to: KVVTVKINPLII*FVGKYEQYLLI
Trigger: GATCAGCAAATACTGCTCATACTTTCCCACAAACAAAATTATCAGGGGATTGATTTTAACAGTGACAACTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049694.4
ENSMUST00000228040.2
ENSMUST00000228070.2
ENSMUST00000228951.2