Pregenerated sensors for VMN1R254 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093917Ensembl transcript IDs: ENSMUST00000105187.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAATAGTATGGGTTGCTCTGGACTTAGCTTGGCCTCTGCGGTACTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGG | + |
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Preference number: 5 (lower is better) Translates to: RIVWVALDLAWPLRY*LGVRMCCIRWRCLW Trigger: CCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGTACCGCAGAGGCCAAGCTAAGTCCAGAGCAACCCATACTATTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105187.3 |
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| CDS TCA 90 bp | CTGAGTATAAGTTTACCTCTATTAACAAGAACAAGAGTGACAAAATaGTGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LSISLPLLTRTRVTK*WILRTQVEHKFVLL Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCATTTTGTCACTCTTGTTCTTGTTAATAGAGGTAAACTTATACTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105187.3 |
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| CDS GCA 72 bp | AACAAATGTGACCACCAGCATCAGAATAGTATGGGTTaGTCTGGACTTAGCTTGGCCTCTGCGGTACTGATT | + |
|
Preference number: 6 (lower is better) Translates to: NKCDHQHQNSMG*SGLSLASAVLI Trigger: AATCAGTACCGCAGAGGCCAAGCTAAGTCCAGAGCAACCCATACTATTCTGATGCTGGTGGTCACATTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105187.3 |
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| CDS CAA 72 bp | TTGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFGNIVRNRVKA*ATAMWLKITCL Trigger: CAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105187.3 |
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| CDS CAA 72 bp | ATGCCTCCAATGAATCCAGAAGTGGAACAGAACAAGTaGCTTTTAGAGTCAGTGTTATTGTCTGTTATCTGT | + |
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Preference number: 6 (lower is better) Translates to: MPPMNPEVEQNK*LLESVLLSVIC Trigger: ACAGATAACAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGGAGGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105187.3 |
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