Pregenerated sensors for VMN1R25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115668

Ensembl transcript IDs: ENSMUST00000176572.3, ENSMUST00000228585.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	ATGACCTCTGGAAGCACAGACAGTGCTCTTAATCTTTaGGCCATCTCTCTAGTTCCAAGTAAATCATTTTTA	+
Preference number: 3 (lower is better) Translates to: MTSGSTDSALNL*AISLVPSKSFL Trigger: TAAAAATGATTTACTTGGAACTAGAGAGATGGCTCAAAGATTAAGAGCACTGTCTGTGCTTCCAGAGGTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176572.3
CDS TCA 90 bp	GGCAGGAGGTCAGATCCATGGGCTTTGATCTATGACATAGGATTGTaGAAGTATAGAAACAAAGGAGAAAAGTATTGGCTAGAATTCCAA	+
Preference number: 5 (lower is better) Translates to: GRRSDPWALIYDIGL*KYRNKGEKYWLEFQ Trigger: TTGGAATTCTAGCCAATACTTTTCTCCTTTGTTTCTATACTTTCACAATCCTATGTCATAGATCAAAGCCCATGGATCTGACCTCCTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2
CDS GCA 90 bp	ATGCTTGCAGTGCCTCTGGTGTCTGAACAAGATAATCACTATATATaGATTTGTGATCAGCATGACTCCTACAAGAAACACATCTCTGAA	+
Preference number: 5 (lower is better) Translates to: MLAVPLVSEQDNHYI*ICDQHDSYKKHISE Trigger: TTCAGAGATGTGTTTCTTGTAGGAGTCATGCTGATCACAAATGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCACTGCAAGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2
CDS TCA 72 bp	CTTTTCTCAGGGGACACTCTCAGGTGCCTGATGCTATaGAGATGCTTGCAGTGCCTCTGGTGTCTGAACAAG	+
Preference number: 6 (lower is better) Translates to: LFSGDTLRCLML*RCLQCLWCLNK Trigger: CTTGTTCAGACACCAGAGGCACTGCAAGCATCTTCATAGCATCAGGCACCTGAGAGTGTCCCCTGAGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2
CDS TCA 72 bp	AGCCAATTATCCCCTCCAGCTAGCAAAAACAATATATaGGCAAGGGTCAGTTGGCAGGAGGTCAGATCCATG	+
Preference number: 6 (lower is better) Translates to: SQLSPPASKNNI*ARVSWQEVRSM Trigger: CATGGATCTGACCTCCTGCCAACTGACCCTTGCTCATATATTGTTTTTGCTAGCTGGAGGGGATAATTGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2
CDS GCA 72 bp	GTGCCTCTGGTGTCTGAACAAGATAATCACTATATATaGATTTGTGATCAGCATGACTCCTACAAGAAACAC	+
Preference number: 6 (lower is better) Translates to: VPLVSEQDNHYI*ICDQHDSYKKH Trigger: GTGTTTCTTGTAGGAGTCATGCTGATCACAAATGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2
CDS CCA 72 bp	ATGAGAAATAGTGAACAGGATTCAGTGACTCTCATCTaGTTGGTTTCACTCACATTGTTAAAACCACCAACA	+
Preference number: 6 (lower is better) Translates to: MRNSEQDSVTLI*LVSLTLLKPPT Trigger: TGTTGGTGGTTTTAACAATGTGAGTGAAACCAACCAGATGAGAGTCACTGAATCCTGTTCACTATTTCTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176572.3 ENSMUST00000228585.2

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