Pregenerated sensors for VMN1R249 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095191

Ensembl transcript IDs: ENSMUST00000105195.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTGTTATTGTCTGTTATCTGTGGACCACTGAACTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACTGCAAGAAGAA	+
Preference number: 5 (lower is better) Translates to: VLLSVICGPLNLIGM*MLLKTLKNQQLQEE Trigger: TTCTTCTTGCAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATTCACATTCCAATTAAGTTCAGTGGTCCACAGATAACAGACAATAACAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 90 bp	TGTAAACACCAGCATCAGGATAGTATGGGTTGCTTTGGACTCAGCTaGGCCTCTGGGGTTCTGATTGGGAGTGAGGATGTGCTGCATTCG	+
Preference number: 6 (lower is better) Translates to: CKHQHQDSMGCFGLS*ASGVLIGSEDVLHS Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGTCCAAAGCAACCCATACTATCCTGATGCTGGTGTTTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 72 bp	AAGACTGGGGAGAAATTATGGACAAACAGAAAGACATaGGCCACAGTCCCAACCCCAAACTGGCAAAGCAAG	+
Preference number: 6 (lower is better) Translates to: KTGEKLWTNRKT*ATVPTPNWQSK Trigger: CTTGCTTTGCCAGTTTGGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCCCCAGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 90 bp	CATTTGAGTTCAGTTGGAGGAGTTTTGGGAGCAAAAGCCATCATGTaGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACA	+
Preference number: 6 (lower is better) Translates to: HLSSVGGVLGAKAIM*FGNIVRNRVKALAT Trigger: TGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 72 bp	TTGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTGTCTT	+
Preference number: 6 (lower is better) Translates to: LFGNIVRNRVKA*ATAMWLKITCL Trigger: AAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 72 bp	GTGGAACAGAACAGCTTTCTTTTCGAGTCAGTGTTATaGTCTGTTATCTGTGGACCACTGAACTTAATTGGA	+
Preference number: 6 (lower is better) Translates to: VEQNSFLFESVL*SVICGPLNLIG Trigger: TCCAATTAAGTTCAGTGGTCCACAGATAACAGACAATAACACTGACTCGAAAAGAAAGCTGTTCTGTTCCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105195.2
CDS CAA 72 bp	GATTCTAATTTACATTTGAGTTCAGTTGGAGGAGTTTaGGGAGCAAAAGCCATCATGTTGTTTGGAAATATA	+
Preference number: 6 (lower is better) Translates to: DSNLHLSSVGGV*GAKAIMLFGNI Trigger: TATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105195.2

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